LOC122325361 (taar12c,LOC107697103,LOC107706946,LOC107550397,LOC107550396)


Basic Information

Item Value
gene id LOC122325361
gene name taar12c,LOC107697103,LOC107706946,LOC107550397,LOC107550396
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21926696 ~ 21927715 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220383.1
ATGATGACTTCTAATGAAACCGACGCTCAAATTGTTTTTCTCTGCTATCCACTCCGGCCAGACTCCTGTCTGAAAATATCACGTTATGTTGTGGTTAAAGTGGCAATGTATGCTTTCTTGGTGCTGATGATCCTCACAACAGTTTTTGGGAACCTGCTGAtcatcatctccatctctcacttcaAACAGCTTCAGTCTCCAACTCATCTGATCGTTCGCTCTCTGGCTGCTAGTGACTGTCTGCTGGGCTCTTTGGTCATGCCGTACAGCATGGTGCGATCTGTTGAAGGCTGCTGGTATCTGGGAGATGTTGTGTGTAAAGTGCATTCTAGTTTAGACATGAGCTTCTGTATCTCCTCCTTACTGCATCTCAGTTTAATATCTGTTGACAGGTACATGGCCATTTGTGACCCTCTGAGATACAGAATGAGGGTCACAAGCAACACTGTGACTACATTTACTACCTTCATATGGCTGTTTTCATTTGTGTACagtttttctgttgtgttttcagGGATAAATGCAGTTGGACTTGAGATGCTGATACTGCAGACTCATTGTGTGGgaagctgtgttttgttttttaacaagcAGTGGGGTCTTATATGTCCAgttcttacattttttcttcCTGGGATGATCATGAGCTCTCTGTATGTAAAAATCTTCCATGTTGCACGGAAACATGCAAAGGTTATGTCAGAAAGAGTGACTGGAGAGATGAAGAGTCAAAGCTCTgctcacagagagagaaaagcagctAAAACTCTGGCTATTGTCatgggtgtttttttgttttgctggaTGCCGTATTTTACTGTTACTGTTCTTGACCCTTTTCTCAATTTTATGACCCCAGCTGATGTTTTTGATGCTTTGGTTTGGTTTGCATACCTGAACTCCACTTGTAACCCACTGATTTATGGTTTTTTCTACCCTTGTTTTCAGAATGCTTTTAAGATTCTTATATCCACTTATGTCTGTTGCATCAGTGATTCAAACACCATGATATCAGATTGA

Function

symbol description
taar12c Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human TAAR2 (trace amine associated receptor 2) and TAAR3P (trace amine associated receptor 3, pseudogene).

NR:

description
PREDICTED: trace amine-associated receptor 4-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220383.1 True 1020 mRNA 0.41 1 21926696 21927715

Neighbor

gene id symbol gene type direction distance location
LOC122325331 taar12i,taar12j,LOC107733377,LOC107550395,LOC107756662,LOC107756663,LOC107550380,LOC107697080,LOC107550381 coding upstream 1518 21924156 ~ 21925178 (+)
taar1b LOC107733378,LOC107697104,LOC107550379 coding upstream 4361 21920295 ~ 21922335 (+)
LOC122325154 taar10b,taar10d,taar10a,taar10c,LOC107697105,LOC107550394,LOC107719440 coding upstream 11043 21914643 ~ 21915653 (+)
LOC122325217 taar10b,taar10d,taar10a,taar10c,LOC107697105,LOC107550394,LOC107719440 coding upstream 15285 21910401 ~ 21911411 (+)
LOC122325159 taar10b,taar10c,taar10d,taar10a,LOC107719439,LOC107550391,LOC107697107,LOC107697105,LOC107550394 coding upstream 25868 21899772 ~ 21900828 (+)
LOC122325420 LOC107550396,LOC107721014,LOC107706946 coding downstream 3612 21931327 ~ 21932340 (+)
LOC122325418 taar12f,taar12c,LOC107697103,LOC107706946,LOC107550396,LOC107550397 coding downstream 16255 21943970 ~ 21944989 (+)
LOC122325415 taar12h,LOC107550398,LOC107697080,LOC107756661,LOC107735327,LOC107683198 coding downstream 19685 21947400 ~ 21948428 (+)
LOC122325419 taar12c,taar12f,LOC107697103,LOC107706946,LOC107550396 coding downstream 23296 21951011 ~ 21952027 (+)
LOC122325416 taar12h,LOC107550398,LOC107697080,LOC107756661,LOC107735327,LOC107683198 coding downstream 27291 21955006 ~ 21956034 (+)
G140900 NA non-coding upstream 17363 21908974 ~ 21909333 (+)
G140794 si:dkey-246e3.4,taar14f,LOC107550386,LOC107719426,LOC107550373,LOC107697083,LOC107719394 non-coding upstream 73575 21850862 ~ 21853121 (+)
G140792 NA non-coding upstream 76561 21849762 ~ 21850135 (+)
G140788 NA non-coding upstream 79675 21846814 ~ 21847021 (+)
G140786 NA non-coding upstream 81243 21844833 ~ 21845453 (+)
G140905 NA non-coding downstream 6269 21933984 ~ 21978548 (+)
G140907 NA non-coding downstream 39983 21967698 ~ 21969950 (+)
G140922 NA non-coding downstream 133348 22061063 ~ 22061533 (+)
G140931 NA non-coding downstream 170196 22097911 ~ 22098292 (+)
LOC122324401 NA non-coding downstream 170690 22098405 ~ 22114867 (+)
G140785 NA other upstream 81995 21844146 ~ 21844701 (+)
ipo13b ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006 other upstream 724734 21168775 ~ 21201962 (+)
G140533 NA other upstream 824186 21101768 ~ 21102510 (+)
LOC122324654 cox7a2b,LOC107745918,LOC107719436,LOC107704035,LOC107669441,LOC107548419 other upstream 1134993 20789876 ~ 20791703 (+)
LOC122324291 NA other upstream 1252307 20673461 ~ 20674389 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other downstream 544046 22471761 ~ 22476774 (+)
fkbp1b fkbp1b other downstream 579012 22506727 ~ 22517683 (+)
matn3a matn3a other downstream 816697 22744412 ~ 22754161 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other downstream 915090 22842805 ~ 22860327 (+)
pln NA other downstream 1416000 23343715 ~ 23351655 (+)

Expression


Co-expression Network