slc35f1 (slc35f1,LOC107697151,LOC107743307,LOC107678858,LOC107727669)


Basic Information

Item Value
gene id slc35f1
gene name slc35f1,LOC107697151,LOC107743307,LOC107678858,LOC107727669
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23232384 ~ 23311466 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220395.1
CGTTCTCATTGGCTAACGCGCGCCGTCGGAAACAGCGGCCTCTAGCGGCCGAACTGTCAATTTCACTCAAAAGCGCACCTCCTCCCAATCATCGCGGCAGTCCTGCTCCGGCGTTCAGAAAATGCGCACTGAAACACCAGGAAACATCTGCTCAGAAAGCAAACGGGGGAACAGGTGCGACGTCGCGCATGCATCTCTAACATCCGACGACTTCTAGGAGCCTCCAGCATCCCTCCACCCCTCCCGCATTTACcggagatacacacacacacacacctgtttatCCTCACCTGCGATATGGAGAGCCGGAGCTCCTCGGAATAACCAAAGCCTCGGGAATGATCGCTGCTTACTGATCGACCGCTTTAGTTCTCCGCTTTAGAGATGATGCCCGAGCACCAGAACCATGTTGTCACCACGATCGAGACCATTCCGTCGGAGACGGTCACCGCATCCCCGTCGCTGTTTCAGAGGATGAAGAAAGTGCTTAACAGGGAACTTCTCCTCACGCTGGCCCTCGGCCAGGTCTTATCGCTGCTCATCTGTGGGATCGGCCTGACCAGCAAATACCTGGCGGACGATTACCACGCCAACACCCCGGTGTTCCAGAGCTTTCTCAACTACATCCTGCTGTTTCTGGTCTACACCACCACGCTCGCAGTCAGGCAAGGAGAAGAGAATCTGCTGGCGATACTGAAAAGAAGATGGTGGAAGTACATGATTCTGGGATTGATTGACATAGAGGCTAATTACCTGGTCATCAAAGCCTACCAGTACACCACACTGACCAGCGTTCAGCTTCTGGACTGCTTCGTGATCCCTGTGGTGCTGCTGCTGTCGTGGTTCTTCCTGTTAGTCAGGTATAAAGTGCTGCACTTCGTGGGTGTAGGAGTGTGTCTCCTGGGCATGGGCTGCATGGTGGGCGCTGACGTCCTGGTGGGCAGACAGCAAGGCCTCGGGGACCATAAGCTTTTAGGGGATTTATTGGTTCTTGCGGGAGCGACCCTGTACGGCATCTCAAATGTTTGTGAGGAGTTCATCGTGAAGAACCTGAGCCGGGTCGAGTTCCTGGGAATGATGGGTCTCTTCGGCTCCTTCTTCAGTGGTATCCAACTggCCATTATGGAGCACAAGGAGCTTCTGAAGGTGCAGTGGGACTGGCAGATCGGGCTGCTGTACATTGGATTCAGCGCGTGTATGTTTGGCTTGTACAGCTTCATGCCGGTGGTAATCAAAAGAACCAGCGCCACAGCGGTGAACCTCTCCCTGCTGACAGCCGACCTGTACAGTCTCTTCTGTGGCCTGTTCCTGTTCCAGTACAAGTTTTCAGGCCTTTACCTGCTGTCCTTCTTCATCATCCTCCTGGGACTGGTCCTgtactcctcctcctccacctacGTGGCACAGGACCCTCGCGTTTATAAACAGTTTCGCAACGCGGGGAACGCCATCACGGACACGCCCACCGTGGGGCCCCTGGAGCCCTCGGTGACCTATACGAGCCTGGGTCAGGAAATAGAGGAGGAGCCTCGCGTGAGAGTCGCCTGAAGGGGGGGGGGCGTGGCCTCTCAGAACCAATCATCCACTGCCCGGCCCAGCAGTCTGTAGAAAAACGAATGATAACGATCACCGAATGATGTAATCAACCACGTAGCAAACGAGTACACTGTGATCACGAACTGTCAATAGGTAGCAGTGACTTCTGTATATCTGAGATATCAGATCCATCATGTATAGAGATGATTTCACCTCATTGCCTCTTTCCCACCCCGCCCGCGGCAAATTAAGTGTTTAGAAGGATTCGTGCTGACTGTTTTGTCCAAATGCTCAattgtgaatgttttattttcttatacGAGCACAAAGGGTTCACTGCATTTGAAAGTTCGACATGGTTTGTTCCACTGCAACTTTACATTTTCAACGACATCTGTACTGAGTTTTACGATGCTGATTTGAGCCAGTGCCTTGCCATGTAATATTATTGTGGGTTACGTTAGCCAATGAGAAACCGCGACTTAAAAACAGTGTCATCTTGTACTGGACATCAGGTCACGATTGTATATCGTATTACCTGctcataattataaatattgccATCCATCAGTCATAAATATGGAAAGGgtacaaaaaaagcattaaaaaaaagttataccatattcattttttttcccaatatttgtcatattttgtgTTGATTCTGCCAAGAAAAAGGGTACATGCGTTTGTATTGAATATAAAAGTCTGTGTAATAGCAATTGATTGTAAACTTGTAAACTATTTTACTGCacttgtttctgttttataagCAGTTCAGTCTTGATTATCATCTTATTCGGATAAAATCCAGTACGATACA

Function

symbol description
slc35f1 Predicted to enable transmembrane transporter activity. Predicted to act upstream of or within transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC35F1 (solute carrier family 35 member F1).

NR:

description
solute carrier family 35 member F1-like

GO: NA

KEGG:

id description
K15287 SLC35F1_2; solute carrier family 35, member F1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220395.1 True 2359 mRNA 0.49 8 23232384 23311466

Neighbor

gene id symbol gene type direction distance location
nus1 nus1,LOC107678856,LOC107697154,LOC107549681,LOC107736830 coding upstream 9469 23215076 ~ 23222915 (+)
LOC122324745 LOC107549679,LOC107678820,LOC107697069 coding upstream 18337 23210790 ~ 23214047 (+)
dcbld1 LOC107678855,LOC107743303,LOC107697143 coding upstream 39999 23164445 ~ 23192385 (+)
vgll2a vgll2a,LOC107603082,LOC107678825,LOC107727586,LOC107549690,LOC107697153,LOC107743328 coding upstream 85408 23142907 ~ 23146976 (+)
rfx6 rfx6,LOC107678847,LOC107697139,LOC107743320 coding upstream 113248 23109345 ~ 23119136 (+)
si:dkeyp-114g9.1 si:dkeyp-114g9.1,LOC107549709,LOC107743329,LOC107727620,LOC107697146 coding downstream 733 23312199 ~ 23320816 (+)
hsdl1 hsdl1,LOC107675229,LOC107602185,LOC107727651,LOC107598113,LOC107697127 coding downstream 511634 23823100 ~ 23824879 (+)
gja11 cx34.5,LOC107675220,LOC107727589,LOC107716920,LOC107578951,LOC107697128,LOC107598110 coding downstream 513465 23824931 ~ 23829080 (+)
gja13.2 cx32.3,LOC107727579,LOC107675218,LOC107697094,LOC107717194,LOC107598109,LOC107580737 coding downstream 517766 23829232 ~ 23831383 (+)
gja12.1 cx28.9,LOC107717177,LOC107717184,LOC107598108,LOC107697093,LOC107602175,LOC107727580,LOC107675219 coding downstream 520852 23832318 ~ 23835853 (+)
LOC122324747 NA non-coding upstream 26302 23194621 ~ 23206082 (+)
G141168 LOC107603093,LOC107678851,LOC107549708,LOC107727631,LOC107697145 non-coding upstream 158719 23066587 ~ 23073665 (+)
G141121 NA non-coding upstream 309256 22920693 ~ 22923128 (+)
G141091 NA non-coding upstream 674882 22557229 ~ 22557502 (+)
G141084 NA non-coding upstream 689852 22542136 ~ 22542532 (+)
G141207 NA non-coding downstream 18725 23330191 ~ 23332366 (+)
G141216 NA non-coding downstream 77026 23388492 ~ 23408824 (+)
G141403 NA non-coding downstream 259629 23571095 ~ 23571454 (+)
G141436 NA non-coding downstream 459629 23771095 ~ 23771426 (+)
G141439 NA non-coding downstream 471042 23782508 ~ 23782720 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other upstream 372057 22842805 ~ 22860327 (+)
matn3a matn3a other upstream 478223 22744412 ~ 22754161 (+)
fkbp1b fkbp1b other upstream 714701 22506727 ~ 22517683 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other upstream 755610 22471761 ~ 22476774 (+)
G140785 NA other upstream 1387683 21844146 ~ 21844701 (+)
pln NA other downstream 32249 23343715 ~ 23351655 (+)
G141475 NA other downstream 761405 24072871 ~ 24074423 (+)
G141524 NA other downstream 1128777 24440243 ~ 24493381 (+)
pals1b mpp5b,LOC107568213,LOC107704059 other downstream 1145524 24456990 ~ 24482661 (+)
LOC122325234 tsta3,zgc:153776,LOC107672947,LOC107655839,LOC107559101,LOC107728120 other downstream 1657414 24968880 ~ 24994837 (+)

Expression


Co-expression Network