nus1 (nus1,LOC107678856,LOC107697154,LOC107549681,LOC107736830)


Basic Information

Item Value
gene id nus1
gene name nus1,LOC107678856,LOC107697154,LOC107549681,LOC107736830
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 23215076 ~ 23222915 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220396.1
CAGCGGGTTCAGAGTGGAAAGGTTGGAAAGATGAAGAAATGGCAGCCTGCGCGCTGCGGTGTTGGCAATGACCAAAACGGCGCTTTTCTCGATACACCGTCGCTCACACCTACGCGGATTACTTTAATATGAGGAGTACGCTTCAAAATCCCATAGATACATTCAACTAGGAGCGCGTTTCTGACACTTTGAAGCATGGCTTTGCTGTATGAGATGGTGTGGCGGTTTTTGCACGCGCTGCTTTACGTCCAGCGCGCGCTGCTCGCCTGGTTCCGAGTCCACGTCTGGAGGTGGAAACGGGCCGTGATGGGCTTGTTGCTGCCCCTGGCCCTCGGCTTTCACAATGCGAAAAAGACCGGAGCCACAGGCAAACGGAGCGGCCGCCGGGTCCGCTGGGGAGCCGATGGCAGGACGTTAGAGAAGCTGCCTCTTCACGTGGGGTTATTGATCGCCGAGGAGGAGATCCACTTCACGGACGTCGCCAATCTAGTGGTCTGGTGCATGGCGGTGGGGATCTCGTATGTCAGTGTGTACGATAATCAAGGTGTGTTCAGGAGGAACAACTCCAGACTCATGGAGGAGATCGTGAGACAGCAGCAGGAGCTTTTGGGAACGGACGGCTCCAAATACTCCGTGGAGCCCGCGAAGAACGGTGCAGATAAACAAGAGCATCAAGTGTTATCTTGCCAGTCAGTGGTGAAGGTCTTATCTCCAGACGATGGGCGGCTCAGCATCGTCCAGGCagctcagcagctctgcagGGCCATCGAGCAGAAGGAAAAGACATCCAAAGACATTAACGTCACTGTGCTGGACTCATTACTCAGAGAGTCAAAGAACACCCCAGACCCAGACCTGGTGCTGAAGTTCGGCCCCGTGGAAAGCACGCTTGGATTTCTTCCCTGGCACATCAGACTAACAGAGAttatCTCCATGCCGTCCCACGTAGACGTCTCTTACGACGACCTGTTCGGTGCTCTGCAGCGCTACGCGACGTGCGAGCAGCGGTTGGGCAAGTGAGGATCCGTCCGCAGGGAGCAGAACAGAAGGAACTGAACGAGCGAGAGGGGATGGAGGGGGTCCGACCCTCTCCTCATGTTTACAGTACAAGCCCTGGAGCCGCTCTTCTCGGCCCGGATCATCTCTGCTCTTCTCCGCCAAGGCCTGTCGggcgactctctctctctctctctctctctctctgtgtgtgtgtgtgatttacacTTGTGCATCTGTGTATGTGTCATGAGCATCAAGTCGCAGAAAAAAGGACACGAGCGCCACCCTGCAAGCAAGCCGGCCGCTCGAGGAGCTTGGTTAATTAAATAtaccacctttttttttttttgggccaCTTTGGAATAGTTCGTAAAGATGCACTGAACTCCGCAGAAGCTACACGCACTCATCCGTCTGGCGCAAAGAACGAGAGCCACCGGACAGCGGACGCGCTTCTGGTTAGCGAAAACCGGCGGGATTTTTCTGTTTCGATGAATCATCTGCATGCCGAATCTGTCTTACTGCAACGTCACGTTCCCATTAAGGCTATACAAGCGTGCTGTaaatggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttattcgtAATCGTGTCATTTGAATGTGCCACGAATGACATGAATTAGCATCAAACCCTGAAGTTTGTAATTCTAAGTGCGTTAATTGATTGCTCTACATCGTTCCCCCACGAAAGCTCTCGCTGTTCGTAACGGCTCGCGGCGCTAATTACGTTTTTATTcgatttttatttgtctttagtAAATATTGCTTCGTTCAGaagtctgttgtttttttttttctccgtcgATATCTCTGTGGATCAGAAATGTTTCGCATTAATATTTCGCAGGAATCcgtgattgtttttttgtttatatcgCGCCACGGGCTTTTCTGCGCGACGCAAGAAGTCTTAAAGGTGTAATCGACGGGAAGGGTGGGTTTGCTAGTGTCCAGCGtgaatgtataataaatgttactgaATCCTTTAA
>XM_043220397.1
AGCAGCGGGTTCAGAGTGGAAAGGTTGGAAAGATGAAGAAATGGCAGCCTGCGCGCTGCGGTGTTGGCAATGACCAAAACGGCGCTTTTCTCGATACACCGTCGCTCACACCTACGCGGATTACTTTAATATGAGGAGTACGCTTCAAAATCCCATAGATACATTCAACTAGGAGCGCGTTTCTGACACTTTGAAGCATGGCTTTGCTGTATGAGATGGTGTGGCGGTTTTTGCACGCGCTGCTTTACGTCCAGCGCGCGCTGCTCGCCTGGTTCCGAGTCCACGTCTGGAGGTGGAAACGGGCCGTGATGGGCTTGTTGCTGCCCCTGGCCCTCGGCTTTCACAATGCGAAAAAGACCGGAGCCACAGGCAAACGGAGCGGCCGCCGGGTCCGCTGGGGAGCCGATGGCAGGACGTTAGAGAAGCTGCCTCTTCACGTGGGGTTATTGATCGCCGAGGAGGAGATCCACTTCACGGACGTCGCCAATCTAGTGGTCTGGTGCATGGCGGTGGGGATCTCGTATGTCAGTGTGTACGATAATCAAGTGTTATCTTGCCAGTCAGTGGTGAAGGTCTTATCTCCAGACGATGGGCGGCTCAGCATCGTCCAGGCagctcagcagctctgcagGGCCATCGAGCAGAAGGAAAAGACATCCAAAGACATTAACGTCACTGTGCTGGACTCATTACTCAGAGAGTCAAAGAACACCCCAGACCCAGACCTGGTGCTGAAGTTCGGCCCCGTGGAAAGCACGCTTGGATTTCTTCCCTGGCACATCAGACTAACAGAGAttatCTCCATGCCGTCCCACGTAGACGTCTCTTACGACGACCTGTTCGGTGCTCTGCAGCGCTACGCGACGTGCGAGCAGCGGTTGGGCAAGTGAGGATCCGTCCGCAGGGAGCAGAACAGAAGGAACTGAACGAGCGAGAGGGGATGGAGGGGGTCCGACCCTCTCCTCATGTTTACAGTACAAGCCCTGGAGCCGCTCTTCTCGGCCCGGATCATCTCTGCTCTTCTCCGCCAAGGCCTGTCGggcgactctctctctctctctctctctctctctgtgtgtgtgtgtgatttacacTTGTGCATCTGTGTATGTGTCATGAGCATCAAGTCGCAGAAAAAAGGACACGAGCGCCACCCTGCAAGCAAGCCGGCCGCTCGAGGAGCTTGGTTAATTAAATAtaccacctttttttttttttgggccaCTTTGGAATAGTTCGTAAAGATGCACTGAACTCCGCAGAAGCTACACGCACTCATCCGTCTGGCGCAAAGAACGAGAGCCACCGGACAGCGGACGCGCTTCTGGTTAGCGAAAACCGGCGGGATTTTTCTGTTTCGATGAATCATCTGCATGCCGAATCTGTCTTACTGCAACGTCACGTTCCCATTAAGGCTATACAAGCGTGCTGTaaatggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttattcgtAATCGTGTCATTTGAATGTGCCACGAATGACATGAATTAGCATCAAACCCTGAAGTTTGTAATTCTAAGTGCGTTAATTGATTGCTCTACATCGTTCCCCCACGAAAGCTCTCGCTGTTCGTAACGGCTCGCGGCGCTAATTACGTTTTTATTcgatttttatttgtctttagtAAATATTGCTTCGTTCAGaagtctgttgtttttttttttctccgtcgATATCTCTGTGGATCAGAAATGTTTCGCATTAATATTTCGCAGGAATCcgtgattgtttttttgtttatatcgCGCCACGGGCTTTTCTGCGCGACGCAAGAAGTCTTAAAGGTGTAATCGACGGGAAGGGTGGGTTTGCTAGTGTCCAGCGtgaatgtataataaatgttactgaATCCTTTAA

Function

symbol description
nus1 Predicted to enable transferase activity, transferring alkyl or aryl (other than methyl) groups. Predicted to contribute to dehydrodolichyl diphosphate synthase activity. Acts upstream of or within sprouting angiogenesis. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of dehydrodolichyl diphosphate synthase complex. Predicted to be active in endoplasmic reticulum membrane. Is expressed in blastomere; brain; notochord; and trunk. Human ortholog(s) of this gene implicated in autosomal dominant mental retardation 55 and congenital disorder of glycosylation Iaa. Orthologous to human NUS1 (NUS1 dehydrodolichyl diphosphate synthase subunit).

NR:

description
dehydrodolichyl diphosphate synthase complex subunit NUS1

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0006486 protein glycosylation biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups molecular_function

KEGG:

id description
K19177 NUS1; dehydrodolichyl diphosphate syntase complex subunit NUS1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220396.1 True 2016 mRNA 0.51 5 23215078 23222915
XM_043220397.1 False 1886 mRNA 0.51 4 23215076 23222915

Neighbor

gene id symbol gene type direction distance location
LOC122324745 LOC107549679,LOC107678820,LOC107697069 coding upstream 1029 23210790 ~ 23214047 (+)
dcbld1 LOC107678855,LOC107743303,LOC107697143 coding upstream 22691 23164445 ~ 23192385 (+)
vgll2a vgll2a,LOC107603082,LOC107678825,LOC107727586,LOC107549690,LOC107697153,LOC107743328 coding upstream 68100 23142907 ~ 23146976 (+)
rfx6 rfx6,LOC107678847,LOC107697139,LOC107743320 coding upstream 95940 23109345 ~ 23119136 (+)
trnal-cag_35 NA coding upstream 114788 23100206 ~ 23100288 (+)
slc35f1 slc35f1,LOC107697151,LOC107743307,LOC107678858,LOC107727669 coding downstream 9469 23232384 ~ 23311466 (+)
si:dkeyp-114g9.1 si:dkeyp-114g9.1,LOC107549709,LOC107743329,LOC107727620,LOC107697146 coding downstream 89284 23312199 ~ 23320816 (+)
hsdl1 hsdl1,LOC107675229,LOC107602185,LOC107727651,LOC107598113,LOC107697127 coding downstream 600185 23823100 ~ 23824879 (+)
gja11 cx34.5,LOC107675220,LOC107727589,LOC107716920,LOC107578951,LOC107697128,LOC107598110 coding downstream 602016 23824931 ~ 23829080 (+)
gja13.2 cx32.3,LOC107727579,LOC107675218,LOC107697094,LOC107717194,LOC107598109,LOC107580737 coding downstream 606317 23829232 ~ 23831383 (+)
LOC122324747 NA non-coding upstream 8994 23194621 ~ 23206082 (+)
G141168 LOC107603093,LOC107678851,LOC107549708,LOC107727631,LOC107697145 non-coding upstream 141411 23066587 ~ 23073665 (+)
G141121 NA non-coding upstream 291948 22920693 ~ 22923128 (+)
G141091 NA non-coding upstream 657574 22557229 ~ 22557502 (+)
G141084 NA non-coding upstream 672544 22542136 ~ 22542532 (+)
G141207 NA non-coding downstream 107276 23330191 ~ 23332366 (+)
G141216 NA non-coding downstream 165577 23388492 ~ 23408824 (+)
G141403 NA non-coding downstream 348180 23571095 ~ 23571454 (+)
G141436 NA non-coding downstream 548180 23771095 ~ 23771426 (+)
G141439 NA non-coding downstream 559593 23782508 ~ 23782720 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other upstream 354749 22842805 ~ 22860327 (+)
matn3a matn3a other upstream 460915 22744412 ~ 22754161 (+)
fkbp1b fkbp1b other upstream 697393 22506727 ~ 22517683 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other upstream 738302 22471761 ~ 22476774 (+)
G140785 NA other upstream 1370375 21844146 ~ 21844701 (+)
pln NA other downstream 120800 23343715 ~ 23351655 (+)
G141475 NA other downstream 849956 24072871 ~ 24074423 (+)
G141524 NA other downstream 1217328 24440243 ~ 24493381 (+)
pals1b mpp5b,LOC107568213,LOC107704059 other downstream 1234075 24456990 ~ 24482661 (+)
LOC122325234 tsta3,zgc:153776,LOC107672947,LOC107655839,LOC107559101,LOC107728120 other downstream 1745965 24968880 ~ 24994837 (+)

Expression


Co-expression Network