rab15 (rab15,LOC107671782,LOC107668202,LOC106571087)


Basic Information

Item Value
gene id rab15
gene name rab15,LOC107671782,LOC107668202,LOC106571087
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 14976262 ~ 14984856 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220400.1
aattctgaCAACCATGTACTGTAAACGTACACAAACGCGTTTTACTCACGCAGTGGGTAtaagattaatataaaaattaatctaGGTCAATATCGCTATCAAAATCGTGATGCTGTGTGTCCGTAATCTCCACCCATTTCCTGAGGTGTGAAGGATGTCGGCGGAACGCACGGAGAGCGTTCTGTAGCCCACCGCACCCACCGCCACCGGaacggcagcagcagcagcgttcCTGACTGATTTCTGTTCACATCGACTCCTGCTTTCTCCACACAGTATTTCGGGGAATCGGCACGCAAGCGACGGACCGGTCgatggaaaaagagagaagatgATACCGTGAAGAGGGTGGACATGGAAACCCGACGCTGAGTTCCTTTAATTGTGACCATAAGACACCATGGCCAAACAGTATGATGTGCTGTTTAGACTCCTGCTTCTCGGAGACTCCGGTGTCGGCAAAACCTGTTTATTATGCAGATTCACGGACAATGAATTTCATCCCTCTCACATTTCCACCATCGGTGTCGATTTCAAAATGAAGACTTTGGAGATAGACGGCATTAAAGTACGAATACAGATATGGGACACAGCAGGTCAGGAGAGATATCAGACCATCACAAAGCAGTACTACAGAAGAGCACAGGGCATTTTTCTGGTGTATGACATCACAAGCGAGCGCTCGTTCCAGCACATCATGAAGTGGGCCAGCGACGTAGATGAGTACGCCCCTGAAAAAGTGCAGAAGATACTTGTTGGGAACAAGTCTGATGAAGAACAGAAGAGACAAGTAGCTACAGAACAGGGAaataagCTTGCCAAGGCTTATGGAATGGACTTTTTTGAGACAAGTGCCTTTACCAACCACAACATTACAGAGTCTTTCACCCGATTGGCCGAATTAGTCTTACAAGCCAATAAGAAGGATCTTGATTTGTTGGGAGGATCCATGAACGACGAGTTCAGTCTCGCCGTTTTGGAGGAGCAGGAAGGATTGTGTAATGTTAGCGACGACGCCAGTAAGTCCTGCTGGTGCTGAGGACAGGAAGTGACTaccttttttttccatatttatgtTACGTTTACATATTgaatttcattttccaaaatcGACAGTTCTTGTTAAACAGTGTTTGGTGCCTTTAATGGCTTATTTCCTGCTGAttcttataaatattatttcttaatcattatttatttaaaattgactGTGAATTAGGATGGAACGTTACAGATtatagtatatgtatattaacattatttttctcaGTAGGAAAAACGAGATCGAAAGGCCACTGCAGTGCaattgtacattatttatttatgctcaTTCAAGCCACACATTAAGAGCCAgtcaaacattatatttaagttaacatataaaatacaagTTGATTAAAAGTGCAAGGCAGCACTGACCAAATGGTTTatttgaaggaatagttcaatcaaaaatgaaaatgtcctcCTGAATATTTACACACCCTCAGGCTATCCTATATGCAGATGAGTTATCATAACAGGAGAAATTAgcatgatgttttattttgatttagcaACACTTGCCCACCAATGGATCCTTTGCAAttaatgggtgccgtcaaaataagagtccaaactgctgataaaaacatcacaattaatCCACAAGTAAGCAACAATAAATGTCTTGTGAGGTGAAAAGTTGTGTGTTTTGTAAGAAACACTGTTTGTAAGTTTAAACTAAAGTAAAAGTTCATCTGCTATTGtctcctaaaaacaaaaaaaacaccaacacgTTTGGTCTTCTcttgtaaacagtgcttaaTCTGTGCGTATGTCTCTCTTGAATTagaaaaagcaatattatggatagtgTCTTAATGATGATTTGTTTCTCTCAGACACGGCTTTCCGTTTTCCAAGATGTTAATTGGTGGACtagagtcatgtggattattatgatgtttttaatcagctgtttaaactcattccgatggcacccattcactacaaagGAGCCTCTGGTGAACAGGTTCTGCTAAATTGATTCAAATctattcagatttaaaacaaacttgTCTACATCTTGAAAGACATAAGGGTGATTTTTAGgcaaattgtcatttttgggtgaacagtTCCTGGTTATATGGCTTTAGCAGCATATtctttcttgtgttttgttatGGGACTTCATGTGAATATTATTCAGATCTGATTCCGCTTTCTATGAAATTCACGAATGCTAAAACCTTGACCAATGAATGCCCTTTCAAGGTAATACATGTTTTCTTGAATGATGAATTGATGAAACGTCACACGTCACTGTAACAATCTAagcttgttttctgtaaaagcactgtaaaaaaaaaaaaataccgtCACCAAACGTGCTGCTTACCAGTTCTGGTCCACTGTGATTGTAAATGAATGCAAGGATTTTTATCTCATTAATCTGAGGTCACTCACTAATTTACTCAAATAGTATCATTTAATGTGGTATTTTATACCAGTAGTGCATCAAGCTCTTTTTTTCCATCAATAATCACTATTTAGCTGATTTAGAATAGTTGGAATGTTTCAACTTTTACTCTTTAGATGATTCTGGAATCGATGTGGTTTAATTTCCTCACAGCGCACAGAATGATGTTTTTCTCCTGCTTAAGTCAACATCACACAAACTTGAGTGAAATGTATGCGGACTGAAACCGTTGTGATGCCTAGCATTGATGGCGGCGTTATATTGTTAAAGATTTGATGTATATTACACTATTGCAGCATTTTTTGTGTGCAAGTGGTATTGTACTATGTTGAGTTAAATGAACTCTTGAATAATGCTGATATGTTTACCTGTTGAAATATGTCCatgaaaagaaaactgaacAATTGAAATGCGTACgtggttatttatatataaactgtaatattgtgattcTGTTTAGGGGTCAAATAGTTATAGGCAAATAGTTGAATAAACATCTAATTCCGAAGCggttttctattattattaatattattattacaatgagAAATTTGGATAGAAATTTCTCTGTAAGTGCGACACCACAAGTTAACACTAGGAGGCAGTTTTGCAAAGCTGAAATCCTTgtgctgaaatgtatttatgcaaaataaaacacactggCGGGAAAGAAAACGGGACGATGAATGTGTTTACAGTGTTATATAATACTCAGAACTGGggaataaacatttataaaactta

Function

symbol description
rab15 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including cellular response to insulin stimulus; protein localization to plasma membrane; and secretion by cell. Predicted to act upstream of or within Rab protein signal transduction. Predicted to be active in Golgi apparatus; cytoplasmic vesicle; and plasma membrane. Orthologous to human RAB15 (RAB15, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-15

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07908 RAB15; Ras-related protein Rab-15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220400.1 True 3208 mRNA 0.38 7 14976262 14984856

Neighbor

gene id symbol gene type direction distance location
sipa1l1 sipa1l1,LOC107721317,LOC107659170,LOC107668228,LOC107756605 coding downstream 4972 14907899 ~ 14971290 (-)
rgs6 rgs6,LOC107659172,LOC107602058,LOC107721319,LOC107756569,LOC108424512,LOC108257637 coding downstream 72767 14846009 ~ 14903495 (-)
wdr21 dcaf4,wdr21,LOC107602090,LOC107659175,LOC107562700,LOC107715145 coding downstream 162760 14808533 ~ 14813502 (-)
pigh pigh,LOC107739364,LOC107602101,LOC107668214,LOC107562701,LOC107721283,LOC107721262 coding downstream 176723 14797948 ~ 14799539 (-)
vps18 vps18,LOC107659178,LOC107562698,LOC107739368,LOC107602125,LOC107668247 coding downstream 192080 14778676 ~ 14784182 (-)
susd6 susd6,LOC107721312,LOC107756599,LOC107549087 coding upstream 30981 15015837 ~ 15036887 (-)
thbs1b thbs1b,LOC107671781,LOC107721311,LOC107549089,LOC107601983,LOC107668245,LOC107756566,LOC103031445 coding upstream 94118 15078974 ~ 15089573 (-)
chrm5b LOC107721291,LOC107549091,LOC107668256,LOC107601926,LOC107668210,LOC107756593,LOC107671776 coding upstream 181550 15166406 ~ 15175414 (-)
ryr3 ryr3,LOC107721310,LOC107756592,LOC107601913,LOC107549090 coding upstream 200856 15185712 ~ 15252625 (-)
grem1a grem1a,LOC107721306,LOC107549097,LOC107693796,LOC107601908,LOC107756591,LOC107668262 coding upstream 291251 15276107 ~ 15278071 (-)
LOC122324712 NA non-coding downstream 132526 14839057 ~ 14843736 (-)
G138627 NA non-coding downstream 182553 14793495 ~ 14793709 (-)
G138579 NA non-coding downstream 397361 14578701 ~ 14578901 (-)
G138562 NA non-coding downstream 451239 14524732 ~ 14525023 (-)
G138537 NA non-coding downstream 548010 14426959 ~ 14428252 (-)
G138812 ywhaqa,ywhaqb,LOC107721301,LOC107549101,LOC107756586,LOC107668239,LOC107733143 non-coding upstream 338716 15323572 ~ 15324280 (-)
G138811 NA non-coding upstream 346945 15331801 ~ 15347281 (-)
G138828 NA non-coding upstream 385752 15370608 ~ 15380969 (-)
G138853 NA non-coding upstream 531987 15516843 ~ 15517070 (-)
G138862 NA non-coding upstream 699320 15684176 ~ 15711053 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other downstream 530337 14441533 ~ 14445925 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other downstream 777734 14193733 ~ 14198528 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other downstream 1208438 13763335 ~ 13767824 (-)
G138285 LOC107555741,LOC107659217,LOC107665323 other downstream 1284255 13664506 ~ 13692007 (-)
gtf2h5 gtf2h5,tf2h5,LOC107659223,LOC107721375 other downstream 1427671 13547276 ~ 13548591 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other upstream 8243 14993099 ~ 15015269 (-)
max max,LOC107668248,LOC107671780,LOC107721316,LOC107602050,LOC107756603 other upstream 12269 14997125 ~ 15003202 (-)
LOC122325611 NA other upstream 857542 15842398 ~ 15842618 (-)
LOC122325617 NA other upstream 858042 15842898 ~ 15843118 (-)
LOC122325622 NA other upstream 858553 15843409 ~ 15843629 (-)

Expression


Co-expression Network