lft1 (LOC107732386,LOC107698358,LOC107553491,LOC107719108,LOC107599070,LOC107696102)


Basic Information

Item Value
gene id lft1
gene name LOC107732386,LOC107698358,LOC107553491,LOC107719108,LOC107599070,LOC107696102
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18161260 ~ 18163325 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220435.1
CCGAGAACAGCAGCAAAGAGTCAGAATCTCTCCAGCACCTTCACGTGGAAGATGTCTTCAGTCCGCGCCGCGTGCCTCCTTTGCGCAGCACTTTTTGCGATGGTGAGGGGTTTCACCCACGAAGACATGAAAGACGCTCTGCTGAAGAAACTGGGGCTCAGCGAAGTTCCGAAAATCCACAAGAGGGATCTGGAGAACCTTGTGGTTCCAGCGCACATCAAGAACAAATATGTTTCCATGCTGAAACTGCACCACGCAAGAAAACGCCGCTCGCTCCCGAGTTTAGCCGGCATATTGAGGGGGATCCCCGGCAATGCAGACATCTCTGGTGAATTTGTATATTCTGACACGACACGTCAACGTATGGTGTTTGAGATGACATCAAGAATCCCGGAGAACAGTGAGGTGACCATGGCAGAACTAAAACTGTTCAAGAAAGCCCCACACAAGCGCTCCGTACCCGAGAGAAAGGGCCACAGGCCCGTCAACAACGCCCGGGTGAGCATCTACTGGGTGGAACCTCTGAAAGACGGGTCAAACCGAACTTCACTAGTGGATTCCAGGTTGATTCCCATTCACGAAACGGGCTGGAAGAGCTTTGATGTCACCCAGGCGGTGCACTATTGGTCGAAGAGCCGAATGGAGATGCCCATGCACCTGGAGGTGTGGATCGAGGGCGAGAGACCCGGCGGTTACGCGGCAGAAATGGCCAAGTGCGTCCGTTTCACAGCTCAAGATCCTAACGACAACACTCTGGGAAAACCCGAGCTTGTTCTTTACACCCTCAACCTCGAGGAATTTGGGTCCAGTGGAGACTGTGAAACCAATGCAGACAGTGAAATGTGCTGCAGAGAAAAATACTTCATCAATTTCCGCGCCCTGACTTGGACCCAGTACTGGATCATCGAACCTTCCGGTTACCAGGCGTTCCGGTGTAACGGCGGCTGCCGGCAGCCCAAGCGCAACTACGGCTACGGAGAGAGGAAGTGCGCGGTCGTGGAAAGCGCGCCGCTACCGATGATGTATTTGGTGAAAAAGGGAGATTATACTGAAATTGAGGTCGCCGAGTTCCCAAATATGATCGTAGAAAAGTGTGGGTGCGCAACGGATAATATTTCAGTCGTATAAAAACGCTATTTACCTACGACCACGTGACGCAATGTACTTAAAAGCTATAAGGCTAAAAAGAAAGGGTGTTGGCAACTTAACCCTTAGTGAGATACCTCAAGCACTTcgtatacatttgtaaatatttcaaaatcgatatgcatttatttttgcatttgtatataATGCCATATTAAGTGAAAGACCGATTTGTAGATGTTATATTTTGAGCAGTAAA

Function

NR:

description
PREDICTED: left-right determination factor 2

GO:

id name namespace
GO:0003140 determination of left/right asymmetry in lateral mesoderm biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0035462 determination of left/right asymmetry in diencephalon biological_process
GO:0016049 cell growth biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005576 extracellular region cellular_component
GO:0005160 transforming growth factor beta receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04668 LEFTY; left-right determination factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220435.1 True 1345 mRNA 0.49 4 18161260 18163325

Neighbor

gene id symbol gene type direction distance location
kif26bb LOC107732424,LOC107553492,LOC107698359,LOC107719102,LOC107696093,LOC107577345 coding downstream 9587 18134188 ~ 18151673 (-)
cnstb LOC107732406,LOC107698361,LOC107719106,LOC107696101,LOC107553493 coding downstream 28032 18123631 ~ 18133228 (-)
sccpdhb sccpdhb,LOC107698360,LOC108439827,LOC107553427,LOC107578761 coding downstream 38124 18116114 ~ 18123136 (-)
stmn4 stmn4,LOC107696168,LOC107698365,LOC107599074,LOC107732359,LOC108257558 coding downstream 124894 18030682 ~ 18036366 (-)
paqr8 paqr8,LOC107698331,LOC107732380,LOC107553447 coding downstream 139684 18018219 ~ 18021576 (-)
fzd3a LOC107732395,LOC107599066,LOC107553488,LOC107719091 coding upstream 51245 18214570 ~ 18231055 (-)
pla2g7 pla2g7,LOC107698350,LOC107732404,LOC107553483,LOC107696191,LOC107601536 coding upstream 162602 18325927 ~ 18331052 (-)
LOC122324297 LOC107683599 coding upstream 190845 18354170 ~ 18363861 (-)
adgrf6 LOC107683600 coding upstream 203442 18366767 ~ 18401190 (-)
LOC122325497 adgrf6,LOC107683600 coding upstream 237841 18401166 ~ 18405819 (-)
G139651 LOC107696185,LOC107553490,LOC107698357,LOC107719095 non-coding downstream 3613 18156801 ~ 18157647 (-)
G139591 NA non-coding downstream 53857 18087212 ~ 18107403 (-)
LOC122324448 NA non-coding downstream 253645 17893736 ~ 17907615 (-)
G139567 ivns1abpa,LOC107696153,LOC107726450,LOC107732388,LOC107553504,LOC107683098,LOC107599089 non-coding downstream 361394 17795484 ~ 17799866 (-)
G139565 NA non-coding downstream 367188 17789198 ~ 17794072 (-)
G139653 NA non-coding upstream 2801 18166126 ~ 18166731 (-)
G139681 NA non-coding upstream 92533 18255858 ~ 18313605 (-)
G139700 mep1a.2,LOC105894426,LOC107696095,LOC107601466,LOC107719099,LOC106571460 non-coding upstream 175949 18339274 ~ 18339510 (-)
G139701 NA non-coding upstream 176704 18340029 ~ 18340244 (-)
G139702 mep1a.2,LOC107601466,LOC107719099,LOC107696095 non-coding upstream 177404 18340729 ~ 18341183 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other downstream 337059 17801402 ~ 17824201 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 733137 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 1699044 16455468 ~ 16462216 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other downstream 1794461 16347201 ~ 16366799 (-)
LOC122324507 sash1,sash1a,LOC107732642,LOC107601490,LOC107693212,LOC107696119 other downstream 2056533 16017318 ~ 16104727 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other upstream 180138 18343463 ~ 18350122 (-)
G139706 LOC107683600,LOC107601464 other upstream 242702 18406027 ~ 18446949 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 1091409 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 1098141 19261466 ~ 19262952 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other upstream 1134909 19298234 ~ 19303968 (-)

Expression


Co-expression Network