wdr21 (dcaf4,wdr21,LOC107602090,LOC107659175,LOC107562700,LOC107715145)


Basic Information

Item Value
gene id wdr21
gene name dcaf4,wdr21,LOC107602090,LOC107659175,LOC107562700,LOC107715145
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 14808533 ~ 14813502 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220443.1
CACCAATGAACAGTAAGGAGGCGGGAGTTCCCGGTGTCATGAGGAAGAAACAGGAAGAAGTAAGCACGAGTGCATGTTTATGAGATAATACTGACATGACTCCTGAGAAGTAAAAATGAAGCGGGGAAACTGGCGATCGAGTGGCAGGGACCGTCACCGACACCATAATCAGTCACAGTGGAGGGGCAGACACCGTTCAGCCCATGATGAGCAGGATTATAGTTCTGACAGCGCAGCAGGTGACGCAAGTTCATCCTCGGCATCCTCGTCTGCACCAGAGTTGCCAGGTTTCTACTTTGACACAGAGAAAAACCGCTACTTTCGTTTGTTGCCTGGGCACAACAACTGTAACCCTCTGACAAAAGAAGAGCTTCagaaaaaggaggaggagaaaaagagatcAGCACTGCTGGCAGAGGATGATGGTCCTAGGAAGAAAGCTCCCAGGATTGGGCTAAATTCTGCGTTGCTGTTACAGAAGAGACATCTGGGTCTGCTGCCCCCAAGCTCCTATTCTAGGTTGATCCATGAAGTGAAAGTCAGCGGGATGCAGCGTCACAGGCTGGAGGTGCAGAGCTCCAACTCCACCAGCCCGAACACAGATAACTTCCATCTTATTGTTGCAGATTCAGCTTGTGAGCGCGTATTCACAGTAAATGATGTGTCACATGGAGGCTGCAAGTATGGCATTATGAATTTCCACGGCTGCAGAAAAGGCTCTCTGTCGGTGGAGATGTGCGATAACCTTTATTTCACGAACCGCAAGgTGAACTCTGTGTGCTGGGCATCTGTGACGCATACAGACTCTCATGTTCTGTTGTGTTTGGTGGGCATTTCTCAGACCCCAGGCTGTGTAAGCTTATTACCTGCTTCTCTTTTCAGCAACTTCAATCCAGATCAGCCAGGGATGCTGTGCAGTTTTAAGATCTCCACAGCTTGGTCATGTGCATGGTGCCTCAACCCACAGGCCGATAAAACCTTTAGCACTGGCCTTTCTCGACGTGTGATTGTGACGGATGCTGTGACTGGACGTAGAGCGACGTACCTCGCAGGCAGTGATGTTCTAGCTCAACAGTTTGCCCTGAGGGCTCCCGTGCTGTTCAACGGCTGTCGCTCAGGAGAGATCTTCAGCATAGACCTGCGTCAGCGTGACAGGGGTCGCAGTCACGGTTGGAAGACCAGCCGCTTCTTCCAGGAGTCAGCCATCACCTCGGTCCAACTGCTACAGGATGAGAACTACCTCCTCGCTGCTGACATGCTGGGCAAGATAAAGCTGTGGGACATTCGTGTCAAGCGGTCCATCAAACAGTATGAAGGCCACCACAATGAATATGCCTATCTACCCATTCATGTCAATGAACCAGAAGGATTGTTGCTTGCTgTGGGTCAGGACTGCTACACCCGTCTCTGGAGCCTCCACGACAGCCGTCTCCTCAGGACCATCCCTTCACCTCACCCTGCAGGGAAAGACTCGATCCCAAATGTGGTGTTTTCCTCCCAGCTGGGTGGTAGTAGAGGACTTCCTGGACTCCTTATGGCTGTCCGTCACGATCTGTACTACTACTCTTACAACAAAGACTATCAGGACGGTCTAACACTAGAGAGTCAGTGCTAACATTTGccatataaaaacacagactGCTGTGTCTTACTGTCTTACTGACCAAAATGTTGCCATTTTACCATTTGCctatagtttttctttttcagtaatATTCTAGATTAGACTGTGATGGATTCAGAATACTCCGTATCCATTATATCATCAATGgatacatttttggaaaagttTATTGGATATAAGATTTAAACTATAGTTACTTGAAACATACCTCCTAAAAGTGCAATTTCATGTCATGTTGTTTTTCTGGAAatatttgaattgaaatgtgctggggggaaaaaaggaggGCAAGGCATTcttcaattcaaaataaatctaaaatctttGTTTCCGTGAGTTTAATTCAAACCCCAACatgaatttaatgttttatttgtttttgtccataaaatgaaaaacaacattgaaacccattgattttaatttcatgtaCTTTCTGTACAAATatgcatttacacatttttatattgaagCCACACTCTTAGAGGTActcaagtttaatttaattggcATACAAGGTGCAAAGAACATAAAATGATATTCGTGTTTCTTA
>XM_043220444.1
GTTGATCCATGAAGTGAAAGTCAGCGGGATGCAGCGTCACAGGCTGGAGGTGCAGAGCTCCAACTCCACCAGCCCGAACACAGATAACTTCCATCTTATTGTTTCTGTcttgtgttttcctttttttttcttctctggatGCATCTTATTAGGCAGATTCAGCTTGTGAGCGCGTATTCACAGTAAATGATGTGTCACATGGAGGCTGCAAGTATGGCATTATGAATTTCCACGGCTGCAGAAAAGGCTCTCTGTCGGTGGAGATGTGCGATAACCTTTATTTCACGAACCGCAAGgTGAACTCTGTGTGCTGGGCATCTGTGACGCATACAGACTCTCATGTTCTGTTGTGTTTGGTGGGCATTTCTCAGACCCCAGGCTGTGTAAGCTTATTACCTGCTTCTCTTTTCAGCAACTTCAATCCAGATCAGCCAGGGATGCTGTGCAGTTTTAAGATCTCCACAGCTTGGTCATGTGCATGGTGCCTCAACCCACAGGCCGATAAAACCTTTAGCACTGGCCTTTCTCGACGTGTGATTGTGACGGATGCTGTGACTGGACGTAGAGCGACGTACCTCGCAGGCAGTGATGTTCTAGCTCAACAGTTTGCCCTGAGGGCTCCCGTGCTGTTCAACGGCTGTCGCTCAGGAGAGATCTTCAGCATAGACCTGCGTCAGCGTGACAGGGGTCGCAGTCACGGTTGGAAGACCAGCCGCTTCTTCCAGGAGTCAGCCATCACCTCGGTCCAACTGCTACAGGATGAGAACTACCTCCTCGCTGCTGACATGCTGGGCAAGATAAAGCTGTGGGACATTCGTGTCAAGCGGTCCATCAAACAGTATGAAGGCCACCACAATGAATATGCCTATCTACCCATTCATGTCAATGAACCAGAAGGATTGTTGCTTGCTgTGGGTCAGGACTGCTACACCCGTCTCTGGAGCCTCCACGACAGCCGTCTCCTCAGGACCATCCCTTCACCTCACCCTGCAGGGAAAGACTCGATCCCAAATGTGGTGTTTTCCTCCCAGCTGGGTGGTAGTAGAGGACTTCCTGGACTCCTTATGGCTGTCCGTCACGATCTGTACTACTACTCTTACAACAAAGACTATCAGGACGGTCTAACACTAGAGAGTCAGTGCTAACATTTGccatataaaaacacagactGCTGTGTCTTACTGTCTTACTGACCAAAATGTTGCCATTTTACCATTTGCctatagtttttctttttcagtaatATTCTAGATTAGACTGTGATGGATTCAGAATACTCCGTATCCATTATATCATCAATGgatacatttttggaaaagttTATTGGATATAAGATTTAAACTATAGTTACTTGAAACATACCTCCTAAAAGTGCAATTTCATGTCATGTTGTTTTTCTGGAAatatttgaattgaaatgtgctggggggaaaaaaggaggGCAAGGCATTcttcaattcaaaataaatctaaaatctttGTTTCCGTGAGTTTAATTCAAACCCCAACatgaatttaatgttttatttgtttttgtccataaaatgaaaaacaacattgaaacccattgattttaatttcatgtaCTTTCTGTACAAATatgcatttacacatttttatattgaagCCACACTCTTAGAGGTActcaagtttaatttaattggcATACAAGGTGCAAAGAACATAAAATGATATTCGTGTTTCTTA
>XM_043220445.1
GTTGATCCATGAAGTGAAAGTCAGCGGGATGCAGCGTCACAGGCTGGAGGTGCAGAGCTCCAACTCCACCAGCCCGAACACAGATAACTTCCATCTTATTGTTATTCAGCTTGTGAGCGCGTATTCACAGTAAATGATGTGTCACATGGAGGCTGCAAGTATGGCATTATGAATTTCCACGGCTGCAGAAAAGGCTCTCTGTCGGTGGAGATGTGCGATAACCTTTATTTCACGAACCGCAAGgTGAACTCTGTGTGCTGGGCATCTGTGACGCATACAGACTCTCATGTTCTGTTGTGTTTGGTGGGCATTTCTCAGACCCCAGGCTGTGTAAGCTTATTACCTGCTTCTCTTTTCAGCAACTTCAATCCAGATCAGCCAGGGATGCTGTGCAGTTTTAAGATCTCCACAGCTTGGTCATGTGCATGGTGCCTCAACCCACAGGCCGATAAAACCTTTAGCACTGGCCTTTCTCGACGTGTGATTGTGACGGATGCTGTGACTGGACGTAGAGCGACGTACCTCGCAGGCAGTGATGTTCTAGCTCAACAGTTTGCCCTGAGGGCTCCCGTGCTGTTCAACGGCTGTCGCTCAGGAGAGATCTTCAGCATAGACCTGCGTCAGCGTGACAGGGGTCGCAGTCACGGTTGGAAGACCAGCCGCTTCTTCCAGGAGTCAGCCATCACCTCGGTCCAACTGCTACAGGATGAGAACTACCTCCTCGCTGCTGACATGCTGGGCAAGATAAAGCTGTGGGACATTCGTGTCAAGCGGTCCATCAAACAGTATGAAGGCCACCACAATGAATATGCCTATCTACCCATTCATGTCAATGAACCAGAAGGATTGTTGCTTGCTgTGGGTCAGGACTGCTACACCCGTCTCTGGAGCCTCCACGACAGCCGTCTCCTCAGGACCATCCCTTCACCTCACCCTGCAGGGAAAGACTCGATCCCAAATGTGGTGTTTTCCTCCCAGCTGGGTGGTAGTAGAGGACTTCCTGGACTCCTTATGGCTGTCCGTCACGATCTGTACTACTACTCTTACAACAAAGACTATCAGGACGGTCTAACACTAGAGAGTCAGTGCTAACATTTGccatataaaaacacagactGCTGTGTCTTACTGTCTTACTGACCAAAATGTTGCCATTTTACCATTTGCctatagtttttctttttcagtaatATTCTAGATTAGACTGTGATGGATTCAGAATACTCCGTATCCATTATATCATCAATGgatacatttttggaaaagttTATTGGATATAAGATTTAAACTATAGTTACTTGAAACATACCTCCTAAAAGTGCAATTTCATGTCATGTTGTTTTTCTGGAAatatttgaattgaaatgtgctggggggaaaaaaggaggGCAAGGCATTcttcaattcaaaataaatctaaaatctttGTTTCCGTGAGTTTAATTCAAACCCCAACatgaatttaatgttttatttgtttttgtccataaaatgaaaaacaacattgaaacccattgattttaatttcatgtaCTTTCTGTACAAATatgcatttacacatttttatattgaagCCACACTCTTAGAGGTActcaagtttaatttaattggcATACAAGGTGCAAAGAACATAAAATGATATTCGTGTTTCTTA

Function

symbol description
wdr21 Orthologous to human DCAF4 (DDB1 and CUL4 associated factor 4); DCAF4L1 (DDB1 and CUL4 associated factor 4 like 1); and DCAF4L2 (DDB1 and CUL4 associated factor 4 like 2).
dcaf4 Predicted to be involved in protein ubiquitination. Part of Cul4-RING E3 ubiquitin ligase complex.

NR:

description
DDB1- and CUL4-associated factor 4

GO: NA

KEGG:

id description
K11799 DCAF4; DDB1- and CUL4-associated factor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220443.1 True 2177 mRNA 0.46 14 14808533 14813502
XM_043220444.1 False 1707 mRNA 0.44 9 14808533 14811808
XM_043220445.1 False 1654 mRNA 0.44 9 14808533 14811808

Neighbor

gene id symbol gene type direction distance location
pigh pigh,LOC107739364,LOC107602101,LOC107668214,LOC107562701,LOC107721283,LOC107721262 coding downstream 8994 14797948 ~ 14799539 (-)
vps18 vps18,LOC107659178,LOC107562698,LOC107739368,LOC107602125,LOC107668247 coding downstream 24351 14778676 ~ 14784182 (-)
ino80 LOC107562697,LOC107721325,LOC107659179,LOC107668207 coding downstream 30711 14742955 ~ 14777822 (-)
syndig1l syndig1l,LOC107659181,LOC107602907,LOC107562693,LOC107668242,LOC107711667 coding downstream 205195 14579447 ~ 14603338 (-)
zgc:153157 inafm2,LOC107659157,LOC107721328,LOC107562690,LOC106952300,LOC108165849 coding downstream 258970 14546671 ~ 14549563 (-)
rgs6 rgs6,LOC107659172,LOC107602058,LOC107721319,LOC107756569,LOC108424512,LOC108257637 coding upstream 32507 14846009 ~ 14903495 (-)
sipa1l1 sipa1l1,LOC107721317,LOC107659170,LOC107668228,LOC107756605 coding upstream 94397 14907899 ~ 14971290 (-)
rab15 rab15,LOC107671782,LOC107668202,LOC106571087 coding upstream 162760 14976262 ~ 14984856 (-)
susd6 susd6,LOC107721312,LOC107756599,LOC107549087 coding upstream 202335 15015837 ~ 15036887 (-)
thbs1b thbs1b,LOC107671781,LOC107721311,LOC107549089,LOC107601983,LOC107668245,LOC107756566,LOC103031445 coding upstream 265472 15078974 ~ 15089573 (-)
G138627 NA non-coding downstream 14824 14793495 ~ 14793709 (-)
G138579 NA non-coding downstream 229632 14578701 ~ 14578901 (-)
G138562 NA non-coding downstream 283510 14524732 ~ 14525023 (-)
G138502 NA non-coding downstream 341119 14269723 ~ 14467414 (-)
LOC122324712 NA non-coding upstream 25555 14839057 ~ 14843736 (-)
G138812 ywhaqa,ywhaqb,LOC107721301,LOC107549101,LOC107756586,LOC107668239,LOC107733143 non-coding upstream 510070 15323572 ~ 15324280 (-)
G138811 NA non-coding upstream 518299 15331801 ~ 15347281 (-)
G138828 NA non-coding upstream 557106 15370608 ~ 15380969 (-)
G138853 NA non-coding upstream 703341 15516843 ~ 15517070 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other downstream 362608 14441533 ~ 14445925 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other downstream 610005 14193733 ~ 14198528 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other downstream 1040709 13763335 ~ 13767824 (-)
G138285 LOC107555741,LOC107659217,LOC107665323 other downstream 1116526 13664506 ~ 13692007 (-)
gtf2h5 gtf2h5,tf2h5,LOC107659223,LOC107721375 other downstream 1259942 13547276 ~ 13548591 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other upstream 179597 14993099 ~ 15015269 (-)
max max,LOC107668248,LOC107671780,LOC107721316,LOC107602050,LOC107756603 other upstream 183623 14997125 ~ 15003202 (-)
LOC122325611 NA other upstream 1028896 15842398 ~ 15842618 (-)
LOC122325617 NA other upstream 1029396 15842898 ~ 15843118 (-)
LOC122325622 NA other upstream 1029907 15843409 ~ 15843629 (-)

Expression


Co-expression Network