XLOC_006780 (erlec1)


Basic Information

Item Value
gene id XLOC_006780
gene name erlec1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 35750690 ~ 35765028 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013046
TTTTTCTGTCAGATATCGTTAAGGCTTGTGTTGTGTCTTGTGTGTGAGTGTGCGTTTTTTCCTCAGAATGCCTTGTAATATTCTGGGATTTTCAGCACATCATTAAATGCTTGAAGACTTAAaagTCAACGTCAGGAGGCCTGTACAGAGAAGACGACTATGTTATTATGACaactacagaaaaagaaaagtacaAGTGTTTATTGCCATCTTTGACAAGCAATCTGGATGATGAGGTGAAGGAGTACAGCGGGCCGAGTCCAGCTGCTTTGCTGGAGCCGTTATTCAAACAGAGCAGCTGCTCTTACAGGATTGAGTCATACTGGACCTATGAAGTTTGCCATGGGAAACATGTGCGGCAGTACCACGAGGACAAAGAGACAGGGCAGAAAATGAACATTCAAGAATACTATCTGGGGAACATGAATAAAAAAGATGGCGCAGAATCAGAAACAGAAAAATCCAGTGACTCTGAAGCAGAATCGCCAAACACCAACACAGAGATACCAACAAAGAATATAGAGGGTCAGCTGACTCCATACTATCCCGTAGAGATGGGACATGGGACAGAATGCACTCTGAAACAGAATCAACCTCGCTCTACCACAGTGCTGTACGTCTGCCATCCTGAGGCAAAGCATGAGATCCTCACAATCGCTGAGGTCATCACCTGTCAGTATGAAGTGGTGGTGCTCACACCCCTGCTCTGTTCTCATCCCAAATACAGGTTCAAGAGCTCTCCAGTGAATGACATCTTCTGCCAGGCTCTGGGTGGTTCACCTCTCAGACCTCAGAGCCTGTCCCAGATGGAACACGAGCAGGAGGAGCTGCTCAAACCACCCTTCAGCACCAGCAGTGAAAGGGGATCCAGGGAGGACACATCTCCAGTGAAGGAAGAGGCCTATACCTCTACCCATAAGCCCCTGACAGTGGGTGGTCAAGCCCAGGTCACCGTTGGCACTACGCACATCTCCCGTCTGACTGATGAACAGCTGATTAAAGAGTTTCTGAGCGGCTCATACTGTCTGCATGGGGGTGTTGGTTGGTGGAAGTATGAATTCTGTTATGGAAAACATGTTCACCAGTATCATGAGGATAAAGAGCAAGGGAAGAACATCGTGGTGGTGGGCAGCTGGAACACTGAGGATCACATGAACTGGGCCAAGAAGAATGTGGCTCGATCTTATCATCTGAAAGATGATGGAGCACAAAAAGTCAAGGTTGTGTCTCACTTCTATGGACATGGAGATCTTTGTGACCTAACAGGGAAACCGAGACAGGTTATAGTCAAGCTAAAGTGTAAGGAGTCTGAATCCCCTCATGCTGTTACAGTGTACATGCTGGAGCCTCAGACATGTCAGTATATCCTCGGGGTTGAGTCACCTGTAATCTGCAAGATCTTGGACACTGCGGATGAAAATGGACTTCTTTCAATTCCTAGCTAGTCTACATGACAAGGAGATGAAGGAATGAACAGCAACTTGGAGAAGGAGGAGTACAGAAGAGGAAGGCAGAATGAAGCTCAGAGGGAGAACTAAAGGTGTGATGACGTTTAGGCATGAACCTGCTGAACCTCAGAGCTGTTGAGAAAGTCCCTCACTGACTGCACTTTCACGTGTTTGACGATTAAACAAGGAGGAGATTTGATgaaactacttttttattttgcgCAGCGTGGACTGAATTTTCcaatgttttcttttcaaatCTCAGACTTGAGGAAATATGCTTTGACACATTTAGATTGGCTTTGGGAAGGTCTTCTGTTCTTAATTTCATCAAGTGCttcatttattctattaattAAAAAAGGCAGCTCTGCcgttttaaatatacattatttatttggtCAAACTTCTGGTCGTTCAATGGTCAACACTGAGCAGCCAGAGATGATTTTAAAAATTGAAGTAATTGTTCTTATGCAGTTTGTGAGGGAGAATACACTGTTTTGTTTGCAAAGAAACGTGAatgtaattaaatagttttttgaaaATCCAGGTTTATGG
>TCONS_00013047
ATGTGCTTCCTGTTGTAACTCTTGTTAAACTATCAGCTGTTAGCCGAACCTTACATTGCACAGACTGGATGTAATAGCCGTTTTTTCCAGCTTTGTCTTTCTAATGTCTCGATAACGCTTCCGGGGGCTCAGCGGCGGCGATGCGGCTGTTTTGGCGCTGGTTTTGGGGACTGATTTGTGTCGGGGTGTCTGCAAATCGTGCAGGATCTCCAGTGTTTTCAGATGAGATCCCCTTCAAAATTAAATGGCCAGGGGCAGACTTTACGCTGTCAACGTCAGGAGGCCTGTACAGAGAAGACGACTATGTTATTATGACaactacagaaaaagaaaagtacaAGTGTTTATTGCCATCTTTGACAAGCAATCTGGATGATGAGGTGAAGGAGTACAGCGGGCCGAGTCCAGCTGCTTTGCTGGAGCCGTTATTCAAACAGAGCAGCTGCTCTTACAGGATTGAGTCATACTGGACCTATGAAGTTTGCCATGGGAAACATGTGCGGCAGTACCACGAGGACAAAGAGACAGGGCAGAAAATGAACATTCAAGAATACTATCTGGGGAACATGAATAAAAAAGATGGCGCAGAATCAGAAACAGAAAAATCCAGTGACTCTGAAGCAGAATCGCCAAACACCAACACAGAGATACCAACAAAGAATATAGAGGGTCAGCTGACTCCATACTATCCCGTAGAGATGGGACATGGGACAGAATGCACTCTGAAACAGAATCAACCTCGCTCTACCACAGTGCTGTACGTCTGCCATCCTGAGGCAAAGCATGAGATCCTCACAATCGCTGAGGTCATCACCTGTCAGTATGAAGTGGTGGTGCTCACACCCCTGCTCTGTTCTCATCCCAAATACAGGTTCAAGAGCTCTCCAGTGAATGACATCTTCTGCCAGGCTCTGGGTGGTTCACCTCTCAGACCTCAGAGCCTGTCCCAGATGGAACACGAGCAGGAGGAGCTGCTCAAACCACCCTTCAGCACCAGCAGTGAAAGGGGATCCAGGGAGGACACATCTCCAGTGAAGGAAGAGGCCTATACCTCTACCCATAAGCCCCTGACAGTGGGTGGTCAAGCCCAGGTCACCGTTGGCACTACGCACATCTCCCGTCTGACTGATGAACAGCTGATTAAAGAGTTTCTGAGCGGCTCATACTGTCTGCATGGGGGTGTTGGTTGGTGGAAGTATGAATTCTGTTATGGAAAACATGTTCACCAGTATCATGAGGATAAAGAGCAAGGGAAGAACATCGTGGTGGTGGGCAGCTGGAACACTGAGGATCACATGAACTGGGCCAAGAAGAATGTGGCTCGATCTTATCATCTGAAAGATGATGGAGCACAAAAAGTCAAGGTTGTGTCTCACTTCTATGGACATGGAGATCTTTGTGACCTAACAGGGAAACCGAGACAGGTTATAGTCAAGCTAAAGTGTAAGGAGTCTGAATCCCCTCATGCTGTTACAGTGTACATGCTGGAGCCTCAGACATGTCAGTATATCCTCGGGGTTGAGTCACCTGTAATCTGCAAGATCTTGGACACTGCGGATGAAAATGGACTTCTTTCAATTCCTAGCTAGTCTACATGACAAGGAGATGAAGGAATGAACAGCAACTTGGAGAAGGAGGAGTACAGAAGAGGAAGGCAGAATGAAGCTCAGAGGGAGAACTAAAGGTGTGATGACGTTTAGGCATGAACCTGCTGAACCTCAGAGCTGTTGAGAAAGTCCCTCACTGACTGCACTTTCACGTGTTTGACGATTAAACAAGGAGGAGATTTGATgaaactacttttttattttgcgCAGCGTGGACTGAATTTTCcaatgttttcttttcaaatCTCAGACTTGAGGAAATATGCTTTGACACATTTAGATTGGCTTTGGGAAGGTCTTCTGTTCTTAATTTCATCAAGTGCttcatttattctattaattAAAAAAGGCAGCTCTGCcgttttaaatatacattatttatttggtCAAACTTCTGGTCGTTCAATGGTCAACACTGAGCAGCCAGAGATGATTTTAAAAATTGAAGTAATTGTTCTTATGCAGTTTGTGAGGGAGAATACACTGTTTTGTTTGCAAAGAAACGTGAatgtaattaaatagttttttgaaaATCCA
>TCONS_00013048
CGGACGGCACTTTTGCATTTAAACTACTATTCAAAAAAAGTAATTTGCTAATGAATAAAGTTTCATGAAACATTACTAGGAAGCATAAATAAACTTTCCTCCACAACCGCCATAGCATAGCAAATGTTAAGCCAGATCGCCCAAAACACAATTAACGCTGCAAATTTGCTATAGCGCATCAGCACATCTATATGGCGCATCAGCACTACAAACAGAGAATGCGCCTTCACGAGCTATTGGCTGAGCGGAATTTCCGCCTGATTCCGGAAATGGACGTGGCAAGATGACAAGCTCCTGATGTGCTTCCTGTTGTAACTCTTGTTAAACTATCAGCTGTTAGCCGAACCTTACATTGCACAGACTGGATGTAATAGCCGTTTTTTCCAGCTTTGTCTTTCTAATGTCTCGATAACGCTTCCGGGGGCTCAGCGGCGGCGATGCGGCTGTTTTGGCGCTGGTTTTGGGGACTGATTTGTGTCGGGGTGTCTGCAAATCGTGCAGGATCTCCAGTGTTTTCAGATGAGATCCCCTTCAAAATTAAATGGCCAGGGGCAGACTTTACGCTGTCAACGTCAGGAGGCCTGTACAGAGAAGACGACTATGTTATTATGACaactacagaaaaagaaaagtacaAGTGTTTATTGCCATCTTTGACAAGCAATCTGGATGTGAGTTTATTCATtgggattttttattttagcttgagaagttaaatataatatacatttaaaattattctTCTGAGATGTAAAGTTCCTAACTGTTTTCTCTTTAAGCTTTAAAGCTGTAAGTCGGATCTGACCATCACATAGTTGACTCTGACTTTATGATTAAAACTTTGAAAAAGCAGATAGTCTGAAGTTGATGTTAGCAACAAGGATATGACAAAAACATGTTTGCTAAAGCATGTTACGAACATTTTAGCaacacataaatacataatattaaaaactgtggttgtgtgttttatgATTACCACACATTAACCATGGTTTTCTGCACCAACCATAGTTTAATGTACATAATTTATTGTGTGTCTCTTTTGAAGGATGAGGTGAAGGAGTACAGCGGGCCGAGTCCAGCTGCTTTGCTGGAGCCGTTATTCAAACAGAGCAGCTGCTCTTACAGGATTGAGTCATACTGGACCTATGAAGTTTGCCATGGGAAACATGTGCGGCAGTACCACGAGGACAAAGAGACAGGGCAGAAAATGAACATTCAAGAATACTATCTGGGGAACATGAATAAAAAAGATGGCGCAGAATCAGAAACAGAAAAATCCAGTGACTCTGAAGCAGAATCGCCAAACACCAACACAGAGATACCAACAAAGAATATAGAGGGTCAGCTGACTCCATACTATCCCGTAGAGATGGGACATGGGACAGAATGCACTCTGAAACAGAATCAACCTCGCTCTACCACAGTGCTGTACGTCTGCCATCCTGAGGCAAAGCATGAGATCCTCACAATCGCTGAGGTCATCACCTGTCAGTATGAAGTGGTGGTGCTCACACCCCTGCTCTGTTCTCATCCCAAATACAGGTTCAAGAGCTCTCCAGTGAATGACATCTTCTGCCAGGCTCTGGGTGGTTCACCTCTCAGACCTCAGAGCCTGTCCCAGATGGAACACGAGCAGGAGGAGCTGCTCAAACCACCCTTCAGCACCAGCAGTGAAAGGGGATCCAGGGAGGACACATCTCCAGTGAAGGAAGAGGCCTATACCTCTACCCATAAGCCCCTGACAGTGGGTGGTCAAGCCCAGGTCACCGTTGGCACTACGCACATCTCCCGTCTGACTGATGAACAGCTGATTAAAGAGTTTCTGAGCGGCTCATACTGTCTGCATGGGGGTGTTGGTTGGTGGAAGTATGAATTCTGTTATGGAAAACATGTTCACCAGTATCATGAGGATAAAGAGCAAGGGAAGAACATCGTGGTGGTGGGCAGCTGGAACACTGAGGATCACATGAACTGGGCCAAGAAGAATGTGGCTCGATCTTATCATCTGAAAGATGATGGAGCACAAAAAGTCAAGGTTGTGTCTCACTTCTATGGACATGGAGATCTTTGTGACCTAACAGGGAAACCGAGACAGGTTATAGTCAAGCTAAAGTGTAAGGAGTCTGAATCCCCTCATGCTGTTACAGTGTACATGCTGGAGCCTCAGACATGTCAGTATATCCTCGGGGTTGAGTCACCTGTAATCTGCAAGATCTTGGACACTGCGGATGAAAATGGACTTCTTTCAATTCCTAGCTAG

Function

symbol description
erlec1 Predicted to be located in endoplasmic reticulum. Is expressed in several structures, including anterior axial hypoblast; axial mesoderm; axis; hatching gland; and otic placode. Orthologous to human ERLEC1 (endoplasmic reticulum lectin 1).

GO: NA

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

ZFIN:

id description
ZDB-GENE-030521-15 Predicted to be located in endoplasmic reticulum. Is expressed in several structures, including anterior axial hypoblast; axial mesoderm; axis; hatching gland; and otic placode. Orthologous to human ERLEC1 (endoplasmic reticulum lectin 1).

Ensembl:

ensembl_id ENSDARG00000086309

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013046 False 2009 mRNA 0.44 15 35750690 35765028
TCONS_00013047 False 2144 mRNA 0.45 14 35750699 35760969
TCONS_00013048 True 2266 mRNA 0.44 13 35751254 35761266

Neighbor

gene id symbol gene type direction distance location
XLOC_006779 BX663524.1 coding downstream 158313 35592242 ~ 35592377 (-)
XLOC_006778 memo1 coding downstream 222993 35510893 ~ 35527697 (-)
XLOC_006777 srd5a2b coding downstream 253104 35484229 ~ 35497586 (-)
XLOC_006776 slx4ip coding downstream 278159 35391609 ~ 35472531 (-)
XLOC_006775 CU138575.1 coding downstream 380006 35370569 ~ 35370684 (-)
XLOC_006781 map3k4 coding upstream 22845 35787873 ~ 35844961 (-)
XLOC_006782 tacc3 coding upstream 115545 35880573 ~ 35892305 (-)
XLOC_006783 mycla coding upstream 139307 35904335 ~ 35908275 (-)
XLOC_006784 NA coding upstream 160014 35925042 ~ 35925484 (-)
XLOC_006785 BX510990.1 coding upstream 197322 35962350 ~ 35962466 (-)
XLOC_006471 BX537274.2 misc downstream 25485785 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 34924465 825904 ~ 826225 (-)
XLOC_006774 NA non-coding downstream 461253 35205297 ~ 35289437 (-)
XLOC_006773 CR932983.2 non-coding downstream 555931 35182994 ~ 35194759 (-)
XLOC_006769 BX649403.2 non-coding downstream 1106409 34644150 ~ 34644281 (-)
XLOC_006797 CR361558.1 non-coding upstream 634232 36399260 ~ 36399375 (-)
XLOC_006804 BX927407.1 non-coding upstream 822742 36587770 ~ 36612159 (-)
XLOC_006814 NA non-coding upstream 1230605 36995633 ~ 36997760 (-)

Expression


Co-expression Network