LOC122325418 (taar12f,taar12c,LOC107697103,LOC107706946,LOC107550396,LOC107550397)


Basic Information

Item Value
gene id LOC122325418
gene name taar12f,taar12c,LOC107697103,LOC107706946,LOC107550396,LOC107550397
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21943970 ~ 21944989 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220467.1
ATGATCACTTTAAATGAAACCGATTCTGAGAATGTGTTTCTCTGCTATCCACTCCTTCCAGACTCATGTCCTAAAGTGCAACACCTTGCTGTAGTTAAAGTAGCAATGTATGCTTTAATAGTGCTGATGATCCTCACAACAGTTTTTGGGAACCTGCTGATCATCATCTCCATTTCTCACTTCAGACAGCTTCAGTCTCCAACTCATCTGATTGTTCGCTCTCTGGCTACTAGTGACTGTCTGCTGGGCTCTTTGGTCATGCCGTACAGCATGGTGCGATCTGTTGAAGGCTGCTGGTATCTGGGAGATTTTGTGTGTAAAGTTCATTCTAGTTTAGACATGACTTTTTGTATCTCATCAGTTTTGCATCTTGGTGTAATTGCTATTGATAGGTACATGGCTATTTGTGACCCTCTGAGATACAGACTGAGGGTCACAAACAACACTGTGACTGTTTTTACAACCTTCACGTGgatatttgcatttgtgtatagtttttctgttgtgttttcagGGATAAATGCAGTTGGACTTGAGATGCTTATATTGCAGACTTACTGTGTGggaaattgtgttttgttttttaaccaaGAGTGGAGTATTATATGTCCAATTCTCACATTTTTTCTTCCTGGGACGATCATGAGCTCTCTCTACATAAAAATCTTCCATGTTGCACGAAAACATGCAAAGGTTATGTCAGAAAGAGTGACTGGAGGGATGAAGAGTCAAAGCTCTgctcacagagagagaaaagcagctAAAACTCTGGCTCTTGTCATGGGTGTTTTCTTGTTCTGCTGGCTGcctttttttactattaatgcTCTTGAccctttttacaatttttggaCACCAGCTGTTGTTTTTGATGCTGTAATTTGGTTTGCATATTTGAACTCCACTTGCAACCCCTTGATCTATGGGTTTTTTTACCCTTGTTTTCAGAGTGCATTTAAGATTCTCATTTCCACTTATATCTGTGGCACAAAAGATTGTAACAATTTGGTATTTGAATGA

Function

symbol description
taar12c Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human TAAR2 (trace amine associated receptor 2) and TAAR3P (trace amine associated receptor 3, pseudogene).
taar12f Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in olfactory epithelium. Orthologous to human TAAR2 (trace amine associated receptor 2) and TAAR3P (trace amine associated receptor 3, pseudogene).

NR:

description
PREDICTED: trace amine-associated receptor 4-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220467.1 True 1020 mRNA 0.40 1 21943970 21944989

Neighbor

gene id symbol gene type direction distance location
LOC122325420 LOC107550396,LOC107721014,LOC107706946 coding upstream 11630 21931327 ~ 21932340 (+)
LOC122325361 taar12c,LOC107697103,LOC107706946,LOC107550397,LOC107550396 coding upstream 16255 21926696 ~ 21927715 (+)
LOC122325331 taar12i,taar12j,LOC107733377,LOC107550395,LOC107756662,LOC107756663,LOC107550380,LOC107697080,LOC107550381 coding upstream 18792 21924156 ~ 21925178 (+)
taar1b LOC107733378,LOC107697104,LOC107550379 coding upstream 21635 21920295 ~ 21922335 (+)
LOC122325154 taar10b,taar10d,taar10a,taar10c,LOC107697105,LOC107550394,LOC107719440 coding upstream 28317 21914643 ~ 21915653 (+)
LOC122325415 taar12h,LOC107550398,LOC107697080,LOC107756661,LOC107735327,LOC107683198 coding downstream 2411 21947400 ~ 21948428 (+)
LOC122325419 taar12c,taar12f,LOC107697103,LOC107706946,LOC107550396 coding downstream 6022 21951011 ~ 21952027 (+)
LOC122325416 taar12h,LOC107550398,LOC107697080,LOC107756661,LOC107735327,LOC107683198 coding downstream 10017 21955006 ~ 21956034 (+)
LOC122325417 taar12j,LOC107756662,LOC107756663,LOC107550380,LOC107550381,LOC107697080,LOC107697079,LOC107756661,LOC107550395 coding downstream 15358 21960347 ~ 21961369 (+)
fermt1 fermt1,LOC107697185,LOC106571740 coding downstream 88007 22032996 ~ 22045546 (+)
G140900 NA non-coding upstream 34637 21908974 ~ 21909333 (+)
G140794 si:dkey-246e3.4,taar14f,LOC107550386,LOC107719426,LOC107550373,LOC107697083,LOC107719394 non-coding upstream 90849 21850862 ~ 21853121 (+)
G140792 NA non-coding upstream 93835 21849762 ~ 21850135 (+)
G140788 NA non-coding upstream 96949 21846814 ~ 21847021 (+)
G140786 NA non-coding upstream 98517 21844833 ~ 21845453 (+)
G140907 NA non-coding downstream 22709 21967698 ~ 21969950 (+)
G140922 NA non-coding downstream 116074 22061063 ~ 22061533 (+)
G140931 NA non-coding downstream 152922 22097911 ~ 22098292 (+)
LOC122324401 NA non-coding downstream 153416 22098405 ~ 22114867 (+)
G140933 NA non-coding downstream 156249 22101238 ~ 22101461 (+)
G140785 NA other upstream 99269 21844146 ~ 21844701 (+)
ipo13b ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006 other upstream 742008 21168775 ~ 21201962 (+)
G140533 NA other upstream 841460 21101768 ~ 21102510 (+)
LOC122324654 cox7a2b,LOC107745918,LOC107719436,LOC107704035,LOC107669441,LOC107548419 other upstream 1152267 20789876 ~ 20791703 (+)
LOC122324291 NA other upstream 1269581 20673461 ~ 20674389 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other downstream 526772 22471761 ~ 22476774 (+)
fkbp1b fkbp1b other downstream 561738 22506727 ~ 22517683 (+)
matn3a matn3a other downstream 799423 22744412 ~ 22754161 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other downstream 897816 22842805 ~ 22860327 (+)
pln NA other downstream 1398726 23343715 ~ 23351655 (+)

Expression


Co-expression Network