LOC122325420 (LOC107550396,LOC107721014,LOC107706946)


Basic Information

Item Value
gene id LOC122325420
gene name LOC107550396,LOC107721014,LOC107706946
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21931327 ~ 21932340 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220469.1
ATGACTTCAAATGAGACTCAAACTGAGAATATGTTCCTCTGCTATCCACTGCGACCCAACTCCTGTCCAAAATTGCATCGTCTTATTGTAGTTAAAGTGGCAATGTATGTTTTGATGGTGCTGATGATTCTCACAACAGTTTTTGGGAACCTGCTGAtcatcatctccatctctcacttcaAACAGCTTCAGTCTCCAACTCATCTGATCGTTCGCTCTCTGGCTGCTAGTGACTGTCTGCTGGGCTCTTTGGTCATGCCGTACAGCATGGTGCGATCTGTTGAAGGCTGCTGGTATCTGGGAGATATTGTGTGCAAAGTGCATTCTAGTTTAGACATGAGCTTCTGTATCTCCTCCTTACTGCATCTCAGTTTAATATCTATTGATAGGTACATGGCCATTTGTGACCCTCTGAGATACAGAATGAGGGTCACAAACAACACTGTGACTGTATTTACTACCTTCATAtggctgttttcatttttctacagtttttctgttgtgttttcagGGATAAGTGCAGCTGGATTAGAGACGCTTATATTGCAAACTTACTGCGTGGGaagttgtgttgtgttttttaacaaacaatGGAGTCTTATATGTCCAATTCTCACATTTTTCCTTCCAGGGACGATCATGAGCTCTCTCTATATAAAAATCTTCCATGttgcacaaaaacatgcaaaggTTATGTCAGAAAGAGTGACTGGAGGGATGAAGAGTCAAAGCTCTgctcacagagagagaaaagcagctAAAGCTCTGGTTATTGTCATGGGTGTTTtcttgttctgttggctgcctTATTTTACTGCTGCTGCTCTCgaccctttttttaatttttggaccCCAGCTGTTGTTTTTGATGCTTTGTTTTGGTTTGCATATTTCAATTCGACCTGCAACCCCTTGATTTATGGAATTTTCTACCCTTGTTTTCAGAAGGCCTTTAAGATTTTCATGTCTACTATCTGTGGCATCAAGCCTTCTAACACCTTGGTACttgaataa

Function

NR:

description
PREDICTED: trace amine-associated receptor 4-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220469.1 True 1014 mRNA 0.41 1 21931327 21932340

Neighbor

gene id symbol gene type direction distance location
LOC122325361 taar12c,LOC107697103,LOC107706946,LOC107550397,LOC107550396 coding upstream 3612 21926696 ~ 21927715 (+)
LOC122325331 taar12i,taar12j,LOC107733377,LOC107550395,LOC107756662,LOC107756663,LOC107550380,LOC107697080,LOC107550381 coding upstream 6149 21924156 ~ 21925178 (+)
taar1b LOC107733378,LOC107697104,LOC107550379 coding upstream 8992 21920295 ~ 21922335 (+)
LOC122325154 taar10b,taar10d,taar10a,taar10c,LOC107697105,LOC107550394,LOC107719440 coding upstream 15674 21914643 ~ 21915653 (+)
LOC122325217 taar10b,taar10d,taar10a,taar10c,LOC107697105,LOC107550394,LOC107719440 coding upstream 19916 21910401 ~ 21911411 (+)
LOC122325418 taar12f,taar12c,LOC107697103,LOC107706946,LOC107550396,LOC107550397 coding downstream 11630 21943970 ~ 21944989 (+)
LOC122325415 taar12h,LOC107550398,LOC107697080,LOC107756661,LOC107735327,LOC107683198 coding downstream 15060 21947400 ~ 21948428 (+)
LOC122325419 taar12c,taar12f,LOC107697103,LOC107706946,LOC107550396 coding downstream 18671 21951011 ~ 21952027 (+)
LOC122325416 taar12h,LOC107550398,LOC107697080,LOC107756661,LOC107735327,LOC107683198 coding downstream 22666 21955006 ~ 21956034 (+)
LOC122325417 taar12j,LOC107756662,LOC107756663,LOC107550380,LOC107550381,LOC107697080,LOC107697079,LOC107756661,LOC107550395 coding downstream 28007 21960347 ~ 21961369 (+)
G140900 NA non-coding upstream 21994 21908974 ~ 21909333 (+)
G140794 si:dkey-246e3.4,taar14f,LOC107550386,LOC107719426,LOC107550373,LOC107697083,LOC107719394 non-coding upstream 78206 21850862 ~ 21853121 (+)
G140792 NA non-coding upstream 81192 21849762 ~ 21850135 (+)
G140788 NA non-coding upstream 84306 21846814 ~ 21847021 (+)
G140786 NA non-coding upstream 85874 21844833 ~ 21845453 (+)
G140905 NA non-coding downstream 1644 21933984 ~ 21978548 (+)
G140907 NA non-coding downstream 35358 21967698 ~ 21969950 (+)
G140922 NA non-coding downstream 128723 22061063 ~ 22061533 (+)
G140931 NA non-coding downstream 165571 22097911 ~ 22098292 (+)
LOC122324401 NA non-coding downstream 166065 22098405 ~ 22114867 (+)
G140785 NA other upstream 86626 21844146 ~ 21844701 (+)
ipo13b ipo13,LOC107745904,LOC107593276,LOC107697216,LOC107691006 other upstream 729365 21168775 ~ 21201962 (+)
G140533 NA other upstream 828817 21101768 ~ 21102510 (+)
LOC122324654 cox7a2b,LOC107745918,LOC107719436,LOC107704035,LOC107669441,LOC107548419 other upstream 1139624 20789876 ~ 20791703 (+)
LOC122324291 NA other upstream 1256938 20673461 ~ 20674389 (+)
ubxn2a LOC107742702,LOC107600119,LOC107603085,LOC107697178,LOC107750080,LOC107667622 other downstream 539421 22471761 ~ 22476774 (+)
fkbp1b fkbp1b other downstream 574387 22506727 ~ 22517683 (+)
matn3a matn3a other downstream 812072 22744412 ~ 22754161 (+)
si:ch211-203k16.3 LOC107549701,LOC107603096,LOC107697150,LOC108424433,LOC108257753 other downstream 910465 22842805 ~ 22860327 (+)
pln NA other downstream 1411375 23343715 ~ 23351655 (+)

Expression


Co-expression Network