cpsf2 (cpsf2,LOC107704064,LOC107669458)


Basic Information

Item Value
gene id cpsf2
gene name cpsf2,LOC107704064,LOC107669458
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20661011 ~ 20673120 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220479.1
CTCAGTGACGTCAGAAGCGGCGGTAATGGCTGCTGCTCTCATGCCGCCGATCTGAAACATTACTATGAATTTAAGATGATTTTTCAGCGATTTTCACCATTTGTTACTGACCACAACCCCTGAGTTCAAAAGTGACACAACGAGATACGGGCGGCAGAATGACGTCCATCATCAAGCTGACGGCTCTTTCTGGAGTCCAGGAGGAATCGGCTCTCTGTTACCTCTTACAGGTTGACGAGTTTCGCTTTCTGCTGGACTGTGGCTGGGATGAAAGTTTTTCCATGGACATTATAGATTCCCTGAAGCGGTATGTCCATCAAGTGGATGCAGTGCTGCTTTCTCATCCCGATCATCTGCATCTGGGCGCTTTACCTTACGCTGTGGGCAAACTGGGGCTCAACTGCACCATCTATGCCACCATCCCCGTCTACAAGATGGGCCAGATGTTCATGTACGATCTTTATCAGTCTCGACACAACACAGAAGATTTCACTCTGTTTACACTGGATGACGTCGATTCAGCTTTTGACAAAATCCAGCAGCTGAAATACTCTCAGATCGTCAACTTGAAAGGAAAAGGTCACGGTCTGTCCATCACCCCACTTCCCGCGGGCCACATGATCGGTGGCACAATCTGGAAAATAGTGAAGGACGGAGAGGAAGAGATCATCTATGCCGTCGATTTCAACCACAAGAGGGAGATTCACCTGAACGGCTGCTCCCTGGAGACCATCAGCAGACCGTCTCTCCTCATCACAGACTCCTTCAATGCCTCGTACATTCAGCCTCGCAGGAAACAGCGCGACGAGCAGCTGCTCACCAATGTCATGGAGACTCTCCGTGGTGATGGAAACGTGCTGATCGCCGTGGATACGGCAGGACGAGTGCTGGAACTGGCTCAACTCTTGGATCAGATCTGGAGGACCAAAGACGCAGGATTAGGAGTTTACTCGCTCGCCCTGCTCAACAACGTCAGCTACAACGTGGTGGAGTTCTCAAAGTCTCAGGTCGAGTGGATGAGCGATAAACTGATGCGATGCTTCGAGGACAAGAGGAACAACCCTTTCCAGTTTCGCCACCTGTCTCTCTGTCACAGCTTATCCGATCTGGCCCGTGTGCCCAGCCCAAAGGTGGTTCTGTGCAGCCAGCCTGATCTGGAGGCCGGCTTCTCACGGGAGCTTTTCATACAGTGGTGCCAGGACCCCAAGAACTCGGTCATTCTCACCTACAGGACCACACCGGGAACTCTGGGCCGCTACCTCATAGACAACCCGGGGGAGAAGAGGATCGAGCTTGAGATAAGAAAACGCTGCCGACTGGAAGGACGAGAACTAGAGGAATAcatggagaaagagaaaatgaagaaagaGGCTGCCAAAAAACTAGAGCAGGCGAAAGAGGTGGACATGGACTCGAGTGATGAGAGCGATATGGATGATGATCTGGAGCAGCCGGCGGTGGTGAAGACCAAACATCATGACCTGATGATGAAGGGCGAGGGTGGGAGGAAAGGCAGCTTCTTCAAGCAGGCCAAAAAGTCCTACCCCATGTTCCCTACACACGAGGAGCGAATCAAGTGGGACGAGTACGGAGAAATCATCAGACCAGAGGAGTTTCTGGTTCCAGAGCTTCAGGCCACTGAAGAGGAAAAGAGCAAACTGGAGTCTGGACTGACCAATGGAGAGGAGCCAATGGAGCAGGACTTGTCTGATGTTCCCACCAAGTGCACCAGCACCACACAAACACTAGACATCAGAGCTCGAGTCATGTACATAGATTACGAGGGCCGCTCTGACGGGGACTCCATTAAGAAGATTATAAACCAGATGAAACCCAGACAGCTAATCATCGTTCACGGACCGGCCGAGGCCAGCCAGGACCTGGCCGAGTCCTGCAAGGCCTTCAGCGGCAAAGACATCAAAGTTTACACACCAAAACTACAGGAGACGGTAGACGCCACCAGCGAGACCCACATTTACCAGGTAAGACTGAAGGACTCGTTGGTCAGTTCGCTGCAGTTCTGTAAAGCCAAAGACACAGAGCTGGCCTGGATCGATGGTGTTCTGGACATGCGGGTGGAGAAAGTTGACACAGGAGTCGTCGCAGAGATGGGAGACGCCAAAGAGGAGACGGAGGATGGAGAGCTGACCATGGACGTCACACCAGACCTGACGACCGAGCCCAGCGCCGCCGCTAACCAGCGGGCCATGAAGACTCTGTTTGGAGAAGACGAGAGGGAGATTTCAGAGGAGAGCGACGTCATTCCCACGCTAGAACCACTGCCTGCTCaagagGTCCCGGGTCATCAGTCCGTGTTCATCAACGAGCCTCGTCTGTCGGACTTTAAGCAGGTTCTGCTGCGTGAAGGGATCCAGGCCGAGTTTGTGGGAGGAGTTTTGGTGTGTAATAATCTGGTGGCTGTCAGGAGGacggAAGCGGGACGCATCTGTCTGGAAGGCTGCCATTGTGATGACTACTACAGGATTCGTGAGCTGTTGTATCAGCAGTACGCTGTAGTTTAACAGCTCTCAATCAGCTCCAGCCCCTttcatttcctttcctttcgTAGTTTTTGagttgtgtatattttattatcgtCCCCCCCTCACGTTTAAATGGCAGACGTTCTCTCTGAAAGCCACCCGAGAGCGTCTGTGCAGACTAAAGAagaacattgtttttgtttcaaactGCTGGATGCAAAGAACCGCTTAAGCCTTTTTTACCCTTGATTTTGTCCAGATAAACTTCAGTTTTCGTAATGAAA

Function

symbol description
cpsf2 Predicted to enable RNA binding activity. Predicted to be involved in mRNA 3'-end processing by stem-loop binding activity and cleavage; mRNA polyadenylation; and pre-mRNA cleavage required for polyadenylation. Predicted to act upstream of or within mRNA cleavage and mRNA processing. Predicted to be located in nucleus. Predicted to be part of mRNA cleavage and polyadenylation specificity factor complex. Orthologous to human CPSF2 (cleavage and polyadenylation specific factor 2).

NR:

description
PREDICTED: cleavage and polyadenylation specificity factor subunit 2

GO:

id name namespace
GO:0006378 mRNA polyadenylation biological_process
GO:0006379 mRNA cleavage biological_process
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex cellular_component
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K14402 CPSF2, CFT2; cleavage and polyadenylation specificity factor subunit 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220479.1 True 2767 mRNA 0.51 15 20661011 20673120

Neighbor

gene id symbol gene type direction distance location
fabp7b fabp7b,fabp7,LOC107675216,LOC107602177,LOC107717149,LOC107675046,LOC102218712 coding downstream 27229 20632717 ~ 20633782 (-)
smpdl3a smpdl3a,LOC107727613 coding downstream 28504 20626973 ~ 20632507 (-)
clvs2 clvs2,LOC107675233,LOC107675107 coding downstream 44796 20596263 ~ 20616215 (-)
tpd52l1 rnf217,tpd52l1,LOC107727670,LOC107676269,LOC107602193,LOC107675045,LOC107716996,LOC107602194,LOC107676250,LOC107675093,LOC107727644 coding downstream 253949 20373185 ~ 20407062 (-)
hey2 hey2,LOC107717129,LOC107727582,LOC107598074 coding downstream 326098 20330690 ~ 20334913 (-)
riox1 zgc:162967,LOC107704066,LOC107669424,LOC107719421,LOC107559126,LOC107548410 coding upstream 1877 20674997 ~ 20680821 (-)
ints9 ints9 coding upstream 33805 20706925 ~ 20718097 (-)
hmbox1b hmbox1b,LOC107704071,LOC107559131,LOC107669440,LOC107745897 coding upstream 72082 20745202 ~ 20757734 (-)
cd109 LOC107704024,LOC107669414,LOC107548408,LOC107559083,LOC107719417 coding upstream 272517 20945637 ~ 20964922 (-)
nkx2.4b nkx2.4b,LOC107704036,LOC107548417,LOC107669430,LOC107745907,LOC107580186 coding upstream 406684 21079804 ~ 21082714 (-)
G140413 NA non-coding downstream 34148 20626655 ~ 20626863 (-)
G140328 NA non-coding downstream 374016 20286480 ~ 20286995 (-)
G140315 NA non-coding downstream 392745 20266668 ~ 20268266 (-)
G140304 NA non-coding downstream 493013 20148280 ~ 20167998 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding downstream 751364 19905631 ~ 19909647 (-)
G140449 NA non-coding upstream 63468 20736588 ~ 20791701 (-)
LOC122324961 NA non-coding upstream 319401 20992521 ~ 20995513 (-)
G140522 cfap61,LOC107745908,LOC107704077 non-coding upstream 323246 20996366 ~ 20996681 (-)
LOC122325251 NA non-coding upstream 372705 21045825 ~ 21049976 (-)
G140592 NA non-coding upstream 410174 21083294 ~ 21083559 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other downstream 2631 20634296 ~ 20658380 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other downstream 118762 20410629 ~ 20542249 (-)
G140277 cad,LOC107602171 other downstream 598034 20061602 ~ 20062977 (-)
G140227 cad other downstream 601408 20057624 ~ 20059603 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other downstream 1045809 19601532 ~ 19615202 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other upstream 295068 20968188 ~ 20975755 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other upstream 416284 21089404 ~ 21091008 (-)
G140616 NA other upstream 525590 21198710 ~ 21278741 (-)
lin28b lin28b,LOC107721434,LOC107719403,LOC107697090,LOC107550364 other upstream 810472 21483592 ~ 21505655 (-)
LOC122324936 NA other upstream 834124 21507244 ~ 21512483 (-)

Expression


Co-expression Network