CI01000001_11034064_11048961 (C1QL4.L, C1QL4, C1QL4A, C1QL4B)


Basic Information

Item Value
gene id CI01000001_11034064_11048961
gene name C1QL4.L, C1QL4, C1QL4A, C1QL4B
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11033863 ~ 11048961 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_11034064_11048961.mRNA
CGAGTTTTTCCTCCAACTCCACTGTTCACGCTGGCGGGCACCATTCCACCTAAAGGAGAGGAGGACTTTCTAACGCTTGCTGCCTCCCGGCTCAGCCGCCGCAAGCGTGTCATAGGAGCGGCCGTGGGTGTGGCCATGGTTCTGATTCTCTTGGTCACCATCCCATTACTGGTCCACAACACTAAAGGAGGAGGAGCCAATGCGGGAAGCCATTATGAAATGCTAGGAAGTTGTCGGATGGTTTGTGACCCCTACACCACTCCTCATGGCCAGGAGCTAACGGCTGTTTCACCCCCACCTCCTGATTTTCCAAACCGGAGAGGGAAATCTGGTTATCGGGGACCTCCGGGGAGCCCAGGACCACCTGGTCCACCTGGAGAGCCTGGAAAGCCAGGTCCACAAGGGCCTCCGGGTCCTGGGCCTGGCGGTTATGTGCCGTCGTTCTACAGCCCTAAGATTGCATTTTACGCAGGCCTGCGCAAGCAACATGAAGGAACTGATGTGCTCAAATTTGATGATGTGGTGACCAATGTTGGCAACTACTATGAGCCCAGCACTGGAAAATTCACATGCCCTCTACCTGGTATCTACTTCTTCACATACCATGTCCTGATGAGAGGAGGAGATGGGACCAGTATGTGGGCAGACCTCAAGAAAAATGGGCAGCTAGTGAAAGCTGGTCTCTTGATACCGACTGGTGCAGTTGTGATGGTCTTCTCATTGTTGGACCTCAGACATGCAAGGCTAAAGTGCCCTTTGGAAATGCCTGAAATTGAAATGATGTGGGTGGATAATCATGGAAAAGTCACAGGTCTGTATATCACCGAGAATGAATCCTGTCAGTTTTATTACCGCTGGAGCACGGCACCACTGATAAAAAACAAGACTTCATATACCCTTGCATCTCGCTGCTCTCACAAAATAGCCTTGCTTGATCAGTCTGTTATCCTAACCTCCCCCTCCCATTTTCTCCTTCAACCCCTGTCTTTCTCCTACCGCTCGCCTTTGCTTATGTATAAAATGCCGTTGCAGAAGTGCCCCCCCTTCATTCTCCCCCTCAATGTAATAAAAAGGCCTGGCAGAACAAGCCCCCAGCAGGCCCGTGGGTCCCTGCTCACAGCCGGCGCTGAGATCAAGTCAGCGTGGCGTTTCACAAGTAGTCGGCTTCCATGTCAATATCCATCTCCAGTGCAGTCAACGGTGAGGGCCAGCGCTATCGCCCAGGATGCTGATCAGAATTATGACTACGCCTCCAACAGTGTGATCCTGCATTTAGACGTGGGAGATGAGGTCTGTGTGCAGCTGGACGGAGGGAAAGTCCACGGAGGAAACACCAACAAATACAGCACGTTCTCTGGCTTCCTCATCTATGCTGACTGACCTGCTCATGATGCTGCTCTACACACTCAGATGTACTGTGTACACACACACACACACACACTCATACAGTTACCTTCACACACTGAACAGGCTTGAAAGAAATGGACATGGTTTATACTGAGTGGAAGGGCTTCACAGATAAGAATTCCTTTCATAAAGCAGATTTCCAAGATTATACACTACTCCCAAACGTAAATTAAA

Function

symbol description
c1ql4a Orthologous to human C1QL4 (complement C1q like 4).
c1ql4b Is expressed in habenula. Orthologous to human C1QL4 (complement C1q like 4).
c1ql4 Predicted to enable identical protein binding activity. Predicted to act upstream of or within negative regulation of ERK1 and ERK2 cascade; negative regulation of fat cell differentiation; and negative regulation of fibroblast proliferation. Predicted to be located in extracellular space. Predicted to be part of collagen trimer.

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_11034064_11048961.mRNA True 1581 mRNA 0.51 4 11033863 11048961

Neighbor

gene id symbol gene type direction distance location
CI01000001_11004027_11004884 NEUROD4 coding downstream 28230 11003614 ~ 11005633 (-)
CI01000001_10983526_10986681 NA coding downstream 46952 10982183 ~ 10986911 (-)
CI01000001_10896443_10925951 ZNF385A coding downstream 107912 10896208 ~ 10925951 (-)
CI01000001_10862471_10864514 NA coding downstream 168093 10862225 ~ 10865770 (-)
CI01000001_10822800_10843434 NA coding downstream 190429 10822680 ~ 10843434 (-)
CI01000001_11089521_11092848 NA coding upstream 40459 11089420 ~ 11093631 (-)
CI01000001_11210296_11213607 NA coding upstream 161263 11210224 ~ 11213607 (-)
CI01000001_11288035_11293399 NA coding upstream 239067 11288028 ~ 11294083 (-)
CI01000001_11385404_11386042 NA coding upstream 334621 11383448 ~ 11388934 (-)
CI01000001_11397805_11428592 CASZ1 coding upstream 348435 11397396 ~ 11428663 (-)
G20230 NA non-coding downstream 5086 11022127 ~ 11028777 (-)
G20292 NA non-coding downstream 40865 10989294 ~ 10992998 (-)
G20247 NA non-coding downstream 105458 10920474 ~ 10928405 (-)
G20268 NA non-coding downstream 159599 10873956 ~ 10874264 (-)
G20237 NA non-coding downstream 199695 10822047 ~ 10834168 (-)
G20322 NA non-coding upstream 50593 11099554 ~ 11101587 (-)
G20341 NA non-coding upstream 62645 11111606 ~ 11182833 (-)
G20315 NA non-coding upstream 67794 11116755 ~ 11120830 (-)
G20317 NA non-coding upstream 74682 11123643 ~ 11124829 (-)
G20316 NA non-coding upstream 81192 11130153 ~ 11131056 (-)
G20136 NA other downstream 494013 10539027 ~ 10539850 (-)
CI01000001_09804494_09811219 NA other downstream 1212967 9804429 ~ 9811219 (-)
G18223 NA other downstream 3105346 7926104 ~ 7928517 (-)
G20319 NA other upstream 61876 11110837 ~ 11114747 (-)
CI01000001_12878462_12899012 NA other upstream 1824437 12878365 ~ 12899469 (-)
CI01000001_12921289_12924608 NA other upstream 1871638 12920599 ~ 12925496 (-)
G20555 NA other upstream 2293028 13341989 ~ 13348146 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00008918 c1ql4b,LOC107673443,LOC107711019,LOC108440793,LOC107585204,LOC108271740,LOC107667333,LOC108432462,LOC100702077,LOC103376602 misc CM030126.1 CM030126.1 14693830 ~ 14715322 (-)