taf1b (LOC107575862)


Basic Information

Item Value
gene id taf1b
gene name LOC107575862
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 15302806 ~ 15307283 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220515.1
TGGACTTTTATTATGGAAAATATTTTGGAGGCCATATTGAAAGCGTGTTTGGCCATGCCGGAAAATAAACAGCACTCCGCGTTCACGATTTGATGTAGAAGTTTTCGGTGTCTCGTGTTAAAGCCATGGACGAACAGCTAACTGATGGATACAGCGAGCCATGCGGCCAGTGCGCTGCTGTGAACTGGGGAGTATCAGACGAGGGCCAGTTCTTCTGCAGGAGCTGCCACAATGTGATCGAGAAAACTAGGGAGGTGGTGGATGTAAACACCTTTCATAGTAAAAACAGCAGGATCTCGCAAATAACAAATcccaaaaagaaaacacaagaAAGCGAGCGGGAGTGGGTGGTGTGCGAGGGATTTCAGTTCATCCTGAAACACCAGGCCAAGGCTTTGGTCAGTCTTGGTGTCTGCATGAAGTTTGAGaCAGAGGTTTTGTGGAATTTCTGGAAGAGATACCTGCAGAACACGCAGCAAGCTTTCACCAAAACATCAGTGTACACATCAGTGTCTACAGTGTTCATGAATGGTTCGGACTCTAACTCTCAAAGTGAACTTTCAGATCACACCGATGGTATTACGTCTATGTCAGAACACACGTCAGCCTCAGGTTACGCGCAGTCATCAGTATGTTCAGGGTCTATGGATGCTGTTGTGGACAAGAGTATGAGGGGAAAGAAAATCCGTAATCTTATGACCATGCCACGGACACTGGCCCTGTGCTATCTGGCTCTGCTGTGGGTCAGAGAGGCCATCACTCTGGCTGACTTGCTGAGGTTGGTCTCAGAGCAGCGTGTTCCTTACATTAACATTCACCAGGCATTTCCAGAGGCCTTGAGACTGTTTGGAAAAGATGTCAGCTTCTTTAACGTTCGGCATCTTCCGTCCTACTCGCTGGTTCATAAAGAAGCTGAGAATCTGGCTCGTATCTTGAAGTTACCCTCCTTCCCAAAAGTTTCCTCAGACTGCCTTCTCCACCCGGTTCCGCTCACTGTCCGCTATCTGTTGGAGGCAAACCTCCCAAATGACCTCCATGACTGGGTCCACGAGGTTATAAGACAGGCTTCTATAGGGGACATCAATtttctgacctttgaccccagcAAGAAAAACTCTCATCTCTTGCGCTATGACATTCAAGCAGTAGCTGTCATCATCGTCACCTTAAAGCTTCTTTTCAAGTTGGATGATCATGTGGAGTGGACGTTATCTGAGGAAACAGCCAAGAAGgagaaaaataactTTTTCCAGGTTAAAGAGTGGTTTGATGTTGTGCATCCTGTCTTGGAGCAAGCCAGAAAGAAGGAAGAACGGGAAGAAGCCAAACGACAATGGGGAACCACTAAGCCTTTAATTACATCACTCAAACGCAAGAGCTTGGTTCTGAAAAAAAAGCGTGTTACTGAATATTTGGAGCAGAAATTTCAGAAGTTTACGGATTCTGAACCAGAACAGTCACCTTCCTTAAACTCTTATGCCAGCTTTCACTTCAGCTGGGGAAAAGAGGAGGGTTCGAATGGACCCAGTATGTATGACAATCGTTTGGACTGTACTTGTATGAAAGGTGGGTTCACGCACCTCTCCAACCGAAAGTACTGGCATCCCGACCTGAAACTATGCATAGACAAGTTGTGTGGAGATCATTTCTCAGAAATTGAGCCCAGTTTGCCCAGGATGTATGTGTGGGTCCTCGATCTCTTCTCTTTCATTCTGGGAGTGCGTCAGGCAGAAGTGCACAGAGAGGTCGTCAGCGTTGAACGTCTATTTTTGAAGCATGAATGCGAGGTTCAATGGACTTActgcaaaaagagaaaaaggacaaaaaccCATGTCATTAGAAAGAAAACCCGTGTTCATAAAGATATTATCACcgattaattataaatatgcagattgttcttttgtcatttgtcatatcaaattatcatttttgagcattatttttattagtgcaaTATTGTTTTCTGTCATTAAACTTGGAATAAACGATATCTGTTTCCCTCAA

Function

NR:

description
TATA box-binding protein-associated factor RNA polymerase I subunit B

GO:

id name namespace
GO:0006356 regulation of transcription by RNA polymerase I biological_process
GO:0005634 nucleus cellular_component
GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding molecular_function

KEGG:

id description
K15213 TAF1B; TATA box-binding protein-associated factor RNA polymerase I subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220515.1 True 2007 mRNA 0.45 15 15302806 15307283

Neighbor

gene id symbol gene type direction distance location
klf11a klf11,klf11a,LOC107549098,LOC107693793,LOC107668260,LOC107756587,LOC107601876 coding downstream 4898 15294518 ~ 15297908 (-)
LOC122324271 rrm2,LOC107668265,LOC107549099,LOC107756588 coding downstream 10551 15288771 ~ 15292255 (-)
LOC122325630 NA coding downstream 12396 15290275 ~ 15290410 (-)
actc1a actc1a,act2,zgc:86709,LOC105024319,LOC100534413,LOC102689871 coding downstream 18513 15281002 ~ 15284293 (-)
LOC122325338 scg5,LOC107549096,LOC107721307,LOC107756590,LOC107601900,LOC107668261 coding downstream 22378 15278218 ~ 15280428 (-)
cpsf3 cpsf3,LOC107693240,LOC107549104,LOC107756584,LOC107668237,LOC107601862 coding upstream 36661 15343944 ~ 15349221 (-)
e2f6 LOC107549105,LOC107721299,LOC107693241,LOC107668234,LOC107756581 coding upstream 58675 15365958 ~ 15370030 (-)
id2b id2,id2b,LOC107602869,LOC107756579,LOC107549107,LOC107693236,LOC107668219,LOC107094442 coding upstream 109684 15416967 ~ 15418769 (-)
rnf144ab rnf144ab,LOC107693234,LOC107721372,LOC107601775,LOC107668259,LOC107549108 coding upstream 131454 15438737 ~ 15452011 (-)
sox11b LOC107693233,LOC107549109,LOC107721294,LOC107601767,LOC107756575,LOC107668258 coding upstream 211927 15519210 ~ 15521783 (-)
LOC122324712 NA non-coding downstream 459070 14839057 ~ 14843736 (-)
G138627 NA non-coding downstream 509097 14793495 ~ 14793709 (-)
G138579 NA non-coding downstream 723905 14578701 ~ 14578901 (-)
G138562 NA non-coding downstream 777783 14524732 ~ 14525023 (-)
G138537 NA non-coding downstream 874554 14426959 ~ 14428252 (-)
G138812 ywhaqa,ywhaqb,LOC107721301,LOC107549101,LOC107756586,LOC107668239,LOC107733143 non-coding upstream 16289 15323572 ~ 15324280 (-)
G138811 NA non-coding upstream 24518 15331801 ~ 15347281 (-)
G138828 NA non-coding upstream 63325 15370608 ~ 15380969 (-)
G138853 NA non-coding upstream 209560 15516843 ~ 15517070 (-)
G138862 NA non-coding upstream 376893 15684176 ~ 15711053 (-)
srsf5b srsf5b,srsf5,LOC107549086,LOC107721313,LOC107756601,LOC108233477,LOC107602033,LOC103029514 other downstream 287537 14993099 ~ 15015269 (-)
max max,LOC107668248,LOC107671780,LOC107721316,LOC107602050,LOC107756603 other downstream 299604 14997125 ~ 15003202 (-)
LOC122324589 armt1,LOC107721382,LOC107737326,LOC107555770,LOC107556129 other downstream 856881 14441533 ~ 14445925 (-)
prph2lb prph2l,LOC107569893,LOC107665408,LOC107711660,LOC107721267,LOC107602225,LOC108424527 other downstream 1104278 14193733 ~ 14198528 (-)
stx11b.2 stx11b.1,LOC107721286,LOC107659169,LOC107577278,LOC107665416,LOC107556141,LOC107711623,LOC107577280,LOC107659168,LOC107556142,LOC107711624,LOC107665418 other downstream 1534982 13763335 ~ 13767824 (-)
LOC122325611 NA other upstream 535115 15842398 ~ 15842618 (-)
LOC122325617 NA other upstream 535615 15842898 ~ 15843118 (-)
LOC122325622 NA other upstream 536126 15843409 ~ 15843629 (-)
LOC122325613 NA other upstream 537071 15844354 ~ 15844574 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other upstream 682866 15990149 ~ 15993645 (-)

Expression


Co-expression Network