cited2 (cited2,LOC107558941,LOC107727673,LOC107689449,LOC107553469)


Basic Information

Item Value
gene id cited2
gene name cited2,LOC107558941,LOC107727673,LOC107689449,LOC107553469
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18871665 ~ 18874009 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220516.1
CCGAGAAGCATGCAGCAGTTTTTTTCGTAATGTTTTTGATGCGGAGGCTGGCGCTGAATGCGGTCTGTATTTGGAGAGCATACGCTTTTTATTGACTTGGATTAGGAGGGATTGTAAACTCTTTCATCTCTGGGATTGTCAGTTACTTTTTGCCGTTGCCGACTGCGGTGCGACGCACTCAGCAGATTCAAGCAGAGAGTGGAATGGTAGACCGCATGATGGCAATGAACCATGGACGTTTCCCAGATGCTGTGAATGGGCATCAGCACTCCGCGCGCAGGATGGGAATGGGACAGTTTTCCAACGCGCTTCCGCAGCAGCAGCATTATAACGTTATCATGGGGGATCACATGCATTACGCGGGAGGGAATGTAAACGCAAACCACGGGATCCGGCATTCCATGGCCTCTGGGAATAATATAAATGGAGGGATCCCCAATGGCAACTTGCCTGCCCGCTTTAACTCCCAGTTTGTCGGACAAGGGCAACAGCTCGCTGCCAGCATGCAGTTGCAGAAGCTCAACACGCCTTACTACAGTCACCACACGCACCCTTCCCATCATCACCATTACATGCACGAACTGCACCCCGCCAGCCACCAGTTAAACGGGACAGGACAGCAGTTCCGAGACAGTAACGCTAAGCAGAACGCGTCTGGGGTTCCTCTGCCTGGCCACCACATGCCTGCAGCAATGCTGCCCCCCAACGTTATCGACACGGATTTTATTGACGAGGAGGTCTTGATGTCACTGGTGATAGAAATGGGCTTGGACCGAATAAAGGAGCTGCCAGAGCTTTGGCTGGGACAGAATGAGTTTGATTTCATGACAGACTTCGTTTGTAAGCAGCAGCCCAGCCGAGTGAGCTGTTAATCtcacctttttcatttttgctccttttttttttttttttttttggctttgtcctttttttatgaGACTGATATTACTGGTGTGTTTTCCTAGATCCATAAACCACAGGGTTCCCACAGTCCTGGATATATCAGGGAGtttcaaaagtttgatttcCCGGGCCTGAAAAAGTCATGtcggttttaattaaatatgtaaaaggttatggacattttttttgtgtagtgtttttttttgtttgttttgcttagCTTTTTAGATCACATTGACAAAATTAACAGTCtctatatttttgaaaaaaaaatccttcagaTCACAAATGACTGGAGAAGGAGGGGAAATCGTTTAAAAACATTAGTGAGAAAGTGTGGGAACCCTAAAATCCGAATGATTAACCCACAGAACAGCAATGGAAGTACCGTTCAAGAGTAAACTATCATCAGCTGATTCATGCCGTTATGTAACAGAAATGGATTTGTTTTGCATGAGAATGATTTGGACACCTAAGAGTCATGCTATGCATCACATATGCAGGGGCTGGAGAGTGAGAAATGCAAAGAAATCCCCCGAAAACTCTGTTCAGTATTAATGTAGCAGAcgaaatagacaaaaaaaatcatgttctgTTCCTTCAGACACTTCTAACATGAGACCTCCAGTGATATCAGATGTCAGTGAATGCATATTCTAAATAATGTTGGTGGTTATGTGACATGATTGTAGATAATAGTGTGTAATTGTCTCAATCAGCAATGTACTATAAACTTTAGTGGCCATATTTACCAGATTCCTGTGCTGCTCAGAGATTCACTGAACTGTGAGCAGATGCTTCAAGTTGTTCTTCTTCTCTCCACCCTTTCTACATCTTCTCAGGCCCGTGTTGCCTCCAtgatgcttgtgtgtgtatatcagaGCCTGAAACATATATGGAAGTGATACGAATGTGAGCGAGAGTGTGCATTTGCCAGCTGCTCTATATGCTTAATTGAGTACAGTGTATTGGAAAGTCCAGGAAAAGACGTTCGGATCCTGAATGTCTGGAATGTTGTAAAGGAAAGGAATGTGGAAATAATCCCAACACAGAAGAGTTTCATCTTCATCGGTTTTCAAAAATAGATAGACCACTGTGCTTATTATAGTATGCGGTACATGGCAATACTACTGTGTTGAGGCTTTCTAGGaaagttttacagtatttttgtatatttttagaaaaaatgttaatttattatattttaatttgcaaacaTGAATAAAGCAGCAGAGGCTCA

Function

symbol description
cited2 Predicted to enable transcription coactivator activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including brain; immature eye; lens; optic primordium; and pharyngeal arch. Human ortholog(s) of this gene implicated in atrial heart septal defect 8 and ventricular septal defect. Orthologous to human CITED2 (Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2).

NR:

description
PREDICTED: cbp/p300-interacting transactivator 2-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K21361 CITED2; Cbp/p300-interacting transactivator 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220516.1 True 2143 mRNA 0.43 2 18871665 18874009

Neighbor

gene id symbol gene type direction distance location
txlnba LOC107689450,LOC107710955,LOC107675104,LOC107558940,LOC107553470,LOC107727608 coding downstream 7629 18846395 ~ 18864036 (-)
slc25a27 slc25a27,LOC107710953 coding downstream 31341 18833395 ~ 18840324 (-)
ptrhd1 ptrhd1 coding downstream 40092 18830424 ~ 18831573 (-)
rpl7l1 rpl7l1,LOC107689455,LOC107690050 coding downstream 87067 18781603 ~ 18784598 (-)
slc5a6a slc5a6,slc5a6a,LOC107553475,LOC107689456,LOC107690043,LOC107601523 coding downstream 91958 18766159 ~ 18779707 (-)
nmbr nmbr,LOC107553439,LOC107727594,LOC107689462,LOC107675069,LOC107717045,LOC107558933 coding upstream 126834 19000843 ~ 19010179 (-)
trnaf-gaa_119 NA coding upstream 202037 19076046 ~ 19076118 (-)
si:ch211-202p1.5 LOC107689457,LOC107727565,LOC107717067,LOC107675103,LOC107558944,LOC107553437 coding upstream 208536 19082545 ~ 19087185 (-)
hivep2a hivep2a,LOC107553466,LOC107689444,LOC107727600,LOC107716448,LOC107558946,LOC107675072 coding upstream 222270 19096279 ~ 19166008 (-)
adat2 adat2,LOC107689443,LOC107727656,LOC107553463,LOC107716491 coding upstream 305800 19179809 ~ 19232817 (-)
G139823 NA non-coding downstream 41866 18824880 ~ 18829799 (-)
G139801 NA non-coding downstream 200732 18669438 ~ 18670933 (-)
G139798 cnih3,LOC106527994,LOC108248696,LOC106607867,LOC107095392,LOC107732540,LOC107601529 non-coding downstream 236999 18627307 ~ 18634666 (-)
G139790 NA non-coding downstream 272753 18598694 ~ 18598912 (-)
LOC122324299 NA non-coding downstream 419533 18449944 ~ 18452132 (-)
G139871 NA non-coding upstream 166781 19040790 ~ 19043914 (-)
G139903 NA non-coding upstream 285829 19159838 ~ 19160157 (-)
G139940 NA non-coding upstream 350371 19224380 ~ 19250790 (-)
G140152 NA non-coding upstream 461070 19335079 ~ 19341060 (-)
G140175 NA non-coding upstream 571819 19445828 ~ 19448712 (-)
G139706 LOC107683600,LOC107601464 other downstream 424716 18406027 ~ 18446949 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other downstream 521543 18343463 ~ 18350122 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other downstream 1047464 17801402 ~ 17824201 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 1443542 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 2409449 16455468 ~ 16462216 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 380725 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 387457 19261466 ~ 19262952 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other upstream 424225 19298234 ~ 19303968 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other upstream 727523 19601532 ~ 19615202 (-)
G140227 cad other upstream 1183615 20057624 ~ 20059603 (-)

Expression


Co-expression Network