LOC122325497 (adgrf6,LOC107683600)


Basic Information

Item Value
gene id LOC122325497
gene name adgrf6,LOC107683600
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 18401166 ~ 18405819 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220535.1
ATGTATTCAAGCTCTCCTTCAGAGGGTCCACTTTGCCTGAAAGatatCAATGAATGTAAAGATGCAGTATCAGTGTGTGGTCCATACTCAGATTGTATTAACTTCATTGGGAGTCACATGTGTTCATGCTGGAGTGGATTTAATACCTCCAATAAAGACAGTCCTGTGAGCCGTAACAACTCATGTCAGGatataaatgaatgtCTGTTCAGTTCACCTGTATGTGGTCCAAATTCCATCTGCACAAATCAGCTGGGAAGTTATAATTGTTCATGTCTGGATGGGTTCACTGCAACAAACTCACTTCTCCTCATCAGCAACAATAACACATGTAGAGATGTGAATGAATGTCTTCAGACGACGGAGGTCTGTGGTCCAAACTCTCGTTGCACAAACTTAATTGGGAGTTACAGCTGTTCCTGCTTGACTGGATATACAGTAACAAATAGCAGTGAACTAGTCAGGGCCAGGAACCCATGCAATGTGACTCTGCCTTTGACTGAGTATCTGATTGAAATTCAGATCAATAGCATGGACAGCAGAATGACTGATCAGCTGAGGAACATCCTGATGTATTTCAGTTTGCCCTACACAATCAGTGACAGCACTAACATCACAGAAATCAACATAACTACTGTGTGTTCCCTGAATGAAACCCAGTATCAGTGTAAATGTGAGGGTCTGTTTGTTTGGCCGAATGACACGTGTTACTTATACGAGGCCTGTGATGTCATCACTAATGGTTCATGTACATGTATCAATGCCCTTCCAACCGACGGACAGTTCTGCCAAGTACTACCTTCTAAATACGTGATTGACATTGATTTGAGATTCTTTGACTTGTTCCTGGTGGATTACTTAAGAAATCTCGTCAGAAATATCAGCCTGCCTTTGACTCTGAGAAACAGCATTAATATCACAGACATCGATATGAATACTGTGTGTGGGTTAAATGGAACAGAATATGAGTGCCAGTGTGAGCAGGATCATGTCTGGCCCAGTGACACCTGCAGAGCCTAtcaggtgtgtgatggcattgTGGGAGGCACTTGTGGATGTATTCAAGCTCTCCCTTCAGAGGGTCCACTTTGCCTGAAAGatatCAATGAATGTAAAGATGCAGTATCAGTGTGTGGTCCATACTCAGATTGTATTAACTTCATTGGGAGTCACATGTGTTCATGCTGGAGTGGATTTAATACCTCCAATAAAGACAGTCCTGTGAGCCGTAACAACTCATGTCAGGatataaatgaatgtCTGTTCAGTTCACCTGTATGTGGTCCAAATTCCATCTGCACAAATCAGCTGGGAAGTTATAATTGTTCATGTCTGGATGGGTTCACTGCAACAAACTCACTTCTCCTCATCAGCAACAATAACACATGTAGAgATGTGAATGAATGTCTTCAGACGACGGAGGTCTGTGGTCCAAACTCTCGTTGCACAAACTTAATTGGGAGTTACAGCTGTTCCTGCTTGACTGGATATACAGTAACAAATAGCAGTGAACTAGTCAGGGCCAGGAACCCATGCAATGTGACTCTGCCTTTGACTGAGTATCTGATTGAAATTCAGATCAATAGCATGGACAGCAGAATGACTGATCAGCTGAGGAACATCCTGATGTATTTCAGTTTGCCCTACACAATCAGTGACAGCACTAACATCACAGAAATCAACATAACTACTGTGTGTTCCCTGAATGAAACCCAGTATCAGTGTAAATGTGAGGGTCTGTTTGTTTGGCCGAATGACACGTGTTACTTATACGAGGCCTGTGATGTCATCACTAATGGTTCATGTACATGTATCAATGCCCTTCCAACCGACGGACAGTTCTGCCAAGTACTACCTTCTAAATACGTGATTGACATTGATTTGAGATTCTTTGACTTGTTCCTGGTGGATTACTTAAGAAATCTCGTCAGAAATATCAGCCTGCCTGCCTTTGACTCTGAGAAACAGCATTAA

Function

symbol description
adgrf6 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and cell surface receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in eye; integument; muscle; and testis.

NR:

description
uncharacterized protein adgrf6 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220535.1 True 1974 mRNA 0.42 14 18401166 18405819

Neighbor

gene id symbol gene type direction distance location
LOC122324297 LOC107683599 coding downstream 37305 18354170 ~ 18363861 (-)
pla2g7 pla2g7,LOC107698350,LOC107732404,LOC107553483,LOC107696191,LOC107601536 coding downstream 70114 18325927 ~ 18331052 (-)
fzd3a LOC107732395,LOC107599066,LOC107553488,LOC107719091 coding downstream 170111 18214570 ~ 18231055 (-)
lft1 LOC107732386,LOC107698358,LOC107553491,LOC107719108,LOC107599070,LOC107696102 coding downstream 237841 18161260 ~ 18163325 (-)
kif26bb LOC107732424,LOC107553492,LOC107698359,LOC107719102,LOC107696093,LOC107577345 coding downstream 249493 18134188 ~ 18151673 (-)
LOC122325499 LOC107683600,LOC107601464,LOC107578785 coding upstream 3339 18409158 ~ 18416776 (-)
LOC122324298 LOC107698314,LOC107553424,LOC107683599 coding upstream 13972 18419791 ~ 18431680 (-)
LOC122324295 LOC107690046,LOC107732525,LOC107601462 coding upstream 26014 18431833 ~ 18447372 (-)
tnfrsf21 tnfrsf21,LOC107732417,LOC107553479,LOC107732538,LOC107690036,LOC107698348 coding upstream 47889 18453708 ~ 18473259 (-)
ptchd4 ptchd4,LOC107732542,LOC107601530,LOC107690039,LOC107553442,LOC107732383,LOC107698346 coding upstream 122619 18528438 ~ 18555294 (-)
G139704 NA non-coding downstream 58836 18342047 ~ 18342330 (-)
G139702 mep1a.2,LOC107601466,LOC107719099,LOC107696095 non-coding downstream 59983 18340729 ~ 18341183 (-)
G139701 NA non-coding downstream 60922 18340029 ~ 18340244 (-)
G139700 mep1a.2,LOC105894426,LOC107696095,LOC107601466,LOC107719099,LOC106571460 non-coding downstream 61656 18339274 ~ 18339510 (-)
G139681 NA non-coding downstream 87561 18255858 ~ 18313605 (-)
LOC122324299 NA non-coding upstream 44125 18449944 ~ 18452132 (-)
G139790 NA non-coding upstream 192875 18598694 ~ 18598912 (-)
G139798 cnih3,LOC106527994,LOC108248696,LOC106607867,LOC107095392,LOC107732540,LOC107601529 non-coding upstream 221488 18627307 ~ 18634666 (-)
G139801 NA non-coding upstream 263619 18669438 ~ 18670933 (-)
G139823 NA non-coding upstream 419061 18824880 ~ 18829799 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other downstream 51044 18343463 ~ 18350122 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other downstream 576965 17801402 ~ 17824201 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 973043 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 1938950 16455468 ~ 16462216 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other downstream 2034367 16347201 ~ 16366799 (-)
G139706 LOC107683600,LOC107601464 other upstream 208 18406027 ~ 18446949 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 848915 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 855647 19261466 ~ 19262952 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other upstream 892415 19298234 ~ 19303968 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other upstream 1195713 19601532 ~ 19615202 (-)

Expression


Co-expression Network