LOC122325502 (galnt14,LOC107716567,LOC107676246,LOC107727639,LOC107675076)


Basic Information

Item Value
gene id LOC122325502
gene name galnt14,LOC107716567,LOC107676246,LOC107727639,LOC107675076
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 19827100 ~ 19849045 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220540.1
ATGCAGGCTATTCTCATACACGAGGCCAAATGGCTCAGTGGGTGTACAACACTGCACTATGACCCTGACCTGCCATCCACTACCATAGTGATCACGTTTCACAATGAGGCACGATCTACCCTGCTGCGCACAGTTCGGAGTGTGTTGAATCGGACTCCTGTGCATCTGATTCATGAAATCATACTGGTAGATGATTTCAGCGAAGATCcaaatgacTGCCTTCTTCTCACCAAGTTGCCAAAAGTAAAGTGTCTTCGTAATAAACGCAGAGAAGgTCTGATCCGGTCTAGGGTTCGAGGGGCGGATGCTGCAGGAGCTGGGATCCTGACTTTTCTGGACAGTCACTGTGAGGTCAACAAAGATTGGCTGCCTCCACTGCTGCAGAGGGCAAAAGAGgacCCGACCTGTGTCGCCAGCCCTGTGATTGACATCATTAATATGGACACGTTTGCCTATGTCGCCGCTTCCTCAGACTTGCGAGGAGGATTTGACTggagtttacattttaaatgggaGCAACTATCAGCTGAAAAGCGAGCCAAGAGAGCTGACCCTACAGAGCCTATTAAAACGCCCATCATCGCAGGAGGACTTTTTGTGATTGACAGATCCTGGTTCAATCGCTTGGGAAAATATGACACGACCATGGACATCTGGGGAGGGAGAACTTTGGTGAAGATTTCTTTTAGAGTATGGATGTGTGGAGGAAGCCTGGAAATCATTCCTTGTAGCAGGGTCGGCCACGTATTTCACAAGAAACATCCTTATATCTTCCCAGAGGGCAACGCCAACACCTACATAAAGAACACCAGAAGGACTGCTGAGGTTTGGATGGATGAGTTCAAACTGTTCTACTACTCAGCTCGGCCGGCTGCTAGGGGAAAATCTTACGGAGACATTCACGGCAGGCAGGAGCTCCGCGAGAGTCTTAAGTGCAAATCCTTCAAGTGGTATCTGGACAATGTCTACCCAGAGCTCAAAGTTCCTGATGATTCCGATGCGAAGTCTGGTGTGATCCGGCAGAGACAAAACTGTCTAGAATCTCGTATAGTGGAGGGTCAGGATCTCCCAGTGCTTACACTCGCACCCTGCAGCATCACCAAAGACGTACCAGCAGCCAATCAGGAGTGGATCTACACCCATGGACAGCAAATCCGCCAGCAGCAGCACTGTCTGTCCGTCTCCACCACTTTCCCTGCCTCCCAGATCCTGCTTGTGCCGTGCAACATCAGCGACGGCAAGCAGCGTTGGCAGAAATCTGGCACTCACCTGGAGCACCTGGCTTCTCGATTCTGCGTGGACAGCGAGATGGCTCTGGACGGCATTGAAAGCAGTAAAATGCTAGTGATCAGCCCATGTGAACTGTCAGCACACACTCAGAGATGGGAGATGCCTTTCTCGTGATCCTTCCTCCTTGGCTTCTCCTCACGTTTCAGAGCTCAGCTGGAGTCAAAGATGGATAGGGAGGcagagagagcgagtgtgtaCCTCCAGGAGGGGCTACATCTGTGTCCTGCTGTTCTGCTATGTCCACTCCCTTTGTCTCTTCGGCACACCACAGGTTCCCAGAGTGTCAATCATACTGATGCTCTCCAGAACAGAGTTTGGCAGCTGGACGCACACAAACTTGCAGGACACACACCGagtgtgacacacacactcacactggaGAACAGCACACaacctttttaatttgttatgcTTGAATTTACCCCAATACGAAGCACTTGTGAGATACATCTGCTAGCACATCGGCATACAATAAA

Function

symbol description
galnt14 Predicted to enable carbohydrate binding activity and hexosyltransferase activity. Predicted to be involved in protein glycosylation. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human GALNT14 (polypeptide N-acetylgalactosaminyltransferase 14).

NR:

description
PREDICTED: polypeptide N-acetylgalactosaminyltransferase 14-like isoform X4

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220540.1 True 1766 mRNA 0.50 16 19827100 19849045

Neighbor

gene id symbol gene type direction distance location
LOC122324982 si:dkey-221h15.4,LOC107602180,LOC107676237,LOC107727604,LOC107727605 coding downstream 175971 19649188 ~ 19651129 (-)
cad cad coding downstream 180012 19628786 ~ 19647088 (-)
dnajc5ga dnajc5g,dnajc5ga,LOC107727634,LOC107675096,LOC107716684,LOC107598061,LOC103043078 coding downstream 199073 19616761 ~ 19628027 (-)
slc30a2 slc30a2,slc30a3,LOC107598103,LOC107675070 coding downstream 272773 19542377 ~ 19554327 (-)
si:ch211-245h14.1 NA coding downstream 310577 19514080 ~ 19516523 (-)
LOC122324484 LOC107602180,LOC107676237,LOC107727604 coding upstream 220361 20069406 ~ 20071277 (-)
rcan2 rcan2,LOC107602203,LOC107727622,LOC107675064,LOC107598065,LOC107676238,LOC108429336,LOC105901692 coding upstream 324503 20173548 ~ 20229821 (-)
LOC122325054 cyp39a1,LOC107727679,LOC107676273,LOC107602202 coding upstream 381930 20230975 ~ 20242311 (-)
clu LOC107602200,LOC107727630,LOC107676249,LOC107675063,LOC107716747,LOC107598069 coding upstream 409208 20258253 ~ 20263850 (-)
ccdc25 ccdc25,LOC107727664,LOC107602198,LOC107676265,LOC107675065,LOC107598073,LOC107716775 coding upstream 444249 20293294 ~ 20296159 (-)
G140248 NA non-coding downstream 25432 19800522 ~ 19801668 (-)
G140240 adat2,LOC107727656,LOC107553463,LOC107689443,LOC107716491 non-coding downstream 86737 19736940 ~ 19740363 (-)
G140175 NA non-coding downstream 378388 19445828 ~ 19448712 (-)
G140152 NA non-coding downstream 486040 19335079 ~ 19341060 (-)
G139940 NA non-coding downstream 576310 19224380 ~ 19250790 (-)
G140265 ehd3,LOC107716590,LOC107675095,LOC107727655,LOC103043599,LOC106520014 non-coding upstream 56586 19905631 ~ 19909647 (-)
G140304 NA non-coding upstream 299235 20148280 ~ 20167998 (-)
G140315 NA non-coding upstream 417623 20266668 ~ 20268266 (-)
G140328 NA non-coding upstream 437435 20286480 ~ 20286995 (-)
G140413 NA non-coding upstream 777610 20626655 ~ 20626863 (-)
trim54 trim54,LOC107602207,LOC107675051,LOC107598093 other downstream 211898 19601532 ~ 19615202 (-)
angel2 LOC107676245,LOC107553457,LOC107727638,LOC107675074,LOC107558950 other downstream 523132 19298234 ~ 19303968 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other downstream 564148 19261466 ~ 19262952 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other downstream 570828 19254734 ~ 19256272 (-)
G139706 LOC107683600,LOC107601464 other downstream 1380151 18406027 ~ 18446949 (-)
G140227 cad other upstream 208579 20057624 ~ 20059603 (-)
G140277 cad,LOC107602171 other upstream 212557 20061602 ~ 20062977 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other upstream 561584 20410629 ~ 20542249 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other upstream 785251 20634296 ~ 20658380 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other upstream 1119143 20968188 ~ 20975755 (-)

Expression


Co-expression Network