taar11 (taar11,LOC107550378,LOC107697081,LOC107733375)


Basic Information

Item Value
gene id taar11
gene name taar11,LOC107550378,LOC107697081,LOC107733375
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21917818 ~ 21918804 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220547.1
ATGATGAATCTGAGTCAACCGTGGGCAGCAGAGACTTTCGGCCTCTGTTTCGCATCCTTGAATGACTCCTGTATGAAGATAGTTTATTCTCCTGTCTTTCGTGTTCCTCTCTACCTGGTCTTTACTATAACCATCTTAATGATAGTGTTCGGCAACCTGTGGGTCATCTGCACCATCTCCTCTTTCCAGCAGCTCCACACACCCACCAACTACCTGATCGTCTCAATGGCCGTATCTGACCTGCTCTTGGGCAGTTTTGTCATGCCTCCGAGCATGATACGCTCTTTGGAGACATGCTGGTACTTTGGAGAGTTTTTGTGCAAGTTTCACTCCGGCACAGATTTTATGCTGTGTAATGCATCTGTTTTGCACCTCACTTTCATCTCAATTGACCGTTACTATGCGGTCTGTCAGCCGCTCCGATATCACAGCAGAATGACCACACGTGTCAGTGTGTTCATGATCATGGTCAGCTGGGgcttttctgccttttttgGCTTTGGAATCATATTCTCAGAGCTGAAAATCGAAAGAAAAAGAACCGAGGAGCTGCATGTTGCTTGCAAGGGAGGGTGTTTAGCATTGCATGGAAGAGAAATCGGAGTCACATATTCACTTGTTTTTTACTTCCTCCCTATGTTTATAATTGTGAGCATTTACAGCAGGATTTTTGTTATAGCACTCAAACATGTTCGTGTTATTAATAGCTACCCCACAAGCTTATTGTCAGTTAGTAAAAAGGATCTAAAAGCCACTAAGACGCTTGCTATTGTCATTGGAGTTTTTATGTCTTGCTGGACACCTTACTTCATGTGTAACATCATAGATCCTATTGTTAACCATACAATACCAGCACTGTTATATGAGGTGCTAATGTGGGTGGCTTATTTGAATGCAGTCTTGAACCCCTTAATTTATGCTTTCTTTTACAGCTGGTTTAGAGAAAAgtccaaaatgttatttaaaaaactgtataaattgTGGTAA

Function

symbol description
taar11 Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

NR:

description
PREDICTED: trace amine-associated receptor 4-like

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220547.1 True 987 mRNA 0.42 1 21917818 21918804

Neighbor

gene id symbol gene type direction distance location
LOC122325446 taar13e,LOC107719422,LOC107550389,LOC107697109,LOC107593251,LOC107685383,LOC107697111 coding downstream 30295 21886498 ~ 21887523 (-)
taar13a taar64,taar13b,LOC107719423,LOC107697110,LOC107550388,LOC107697111,LOC107719422,LOC107697109 coding downstream 33390 21883406 ~ 21884428 (-)
LOC122325436 taar13c,taar13e,LOC107593251,LOC107685383,LOC107697111,LOC107550387,LOC107719422,LOC107697109 coding downstream 37639 21879154 ~ 21880179 (-)
LOC122325342 taar13e,LOC107697111,LOC107550387,LOC107593251,LOC107685383,LOC107550389,LOC107719422,LOC107697109 coding downstream 46054 21870742 ~ 21871764 (-)
taar15 LOC107719424,LOC107697112,LOC107550376 coding downstream 51932 21864888 ~ 21865886 (-)
LOC122325511 taar12f,taar12e,LOC107706946,LOC107550397,LOC107550396,LOC107697103,LOC107721014 coding upstream 16570 21935374 ~ 21936459 (-)
bmp2b bmp2b,LOC107742710,LOC107685371,LOC107593250 coding upstream 82409 22001213 ~ 22006248 (-)
chgb LOC107593248,LOC107667615,LOC107756670,LOC107742709 coding upstream 134253 22053057 ~ 22058826 (-)
gzf1 LOC107667619,LOC107600081,LOC107593244,LOC107742706,LOC107756665,LOC107697078 coding upstream 173268 22092072 ~ 22097205 (-)
atad2b atad2b,LOC107697175,LOC107667607,LOC107750077,LOC107742719,LOC107603081 coding upstream 476031 22394835 ~ 22470270 (-)
G140901 NA non-coding downstream 8459 21908991 ~ 21909359 (-)
G140888 NA non-coding downstream 72797 21844794 ~ 21845021 (-)
G140885 NA non-coding downstream 75473 21842126 ~ 21842345 (-)
G140884 NA non-coding downstream 75784 21841762 ~ 21842034 (-)
G140882 NA non-coding downstream 77053 21840515 ~ 21840765 (-)
LOC122325423 NA non-coding upstream 31942 21950746 ~ 21970149 (-)
LOC122325422 NA non-coding upstream 43392 21962196 ~ 21964129 (-)
G140940 NA non-coding upstream 120761 22039565 ~ 22041112 (-)
LOC122325129 NA non-coding upstream 142768 22061572 ~ 22067308 (-)
G140964 NA non-coding upstream 162720 22081524 ~ 22082617 (-)
LOC122325102 taar14e,si:dkey-246e3.4,LOC107550386,LOC107719394,LOC107550373,LOC107593252,LOC107719391,LOC107719426,LOC107697114 other downstream 70901 21845214 ~ 21846917 (-)
LOC122324884 LOC107550373,LOC107719391,LOC107719393,LOC107719392,LOC107742734,LOC107593252,LOC107579143,LOC107550386,LOC107719394 other downstream 73185 21842432 ~ 21844633 (-)
G140883 NA other downstream 76350 21841113 ~ 21841468 (-)
batf batf,LOC107697118 other downstream 176741 21732544 ~ 21741077 (-)
LOC122324936 NA other downstream 405335 21507244 ~ 21512483 (-)
G140972 NA other upstream 193798 22112602 ~ 22113044 (-)
mcm9 mcm9,LOC107678857,LOC107549683,LOC107743310,LOC107697136,LOC107727573,LOC107603056 other upstream 1465767 23384571 ~ 23401391 (-)
tbc1d32 tbc1d32,LOC107602184,LOC107727650,LOC107675228,LOC107716900,LOC107697130 other upstream 1866948 23785752 ~ 23823050 (-)
G141502 NA other upstream 2085883 24004687 ~ 24006665 (-)
LOC122324315 rbm25,rbm25b,hsp90ab1,LOC107704053,LOC107669447,LOC107732485,LOC107732486,LOC107568216,LOC107704054 other upstream 2335589 24254393 ~ 24517743 (-)

Expression


Co-expression Network