LOC122325511 (taar12f,taar12e,LOC107706946,LOC107550397,LOC107550396,LOC107697103,LOC107721014)


Basic Information

Item Value
gene id LOC122325511
gene name taar12f,taar12e,LOC107706946,LOC107550397,LOC107550396,LOC107697103,LOC107721014
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21935374 ~ 21936459 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220548.1
atgtactatatatatgttCACTTGACTTTAGATATAGTTATAAAGAACATCATCTCAGCATCTGGAGCAGATGTGATAACTTCAAATGAAACTGAGAACATCCTTCTCTGCTATCCACTCCAGCTGGACTCCTGTCCAAAACTGCATCGTTTGACTGTGATTAAAGTGGCGATGTATGTTTTGATGGTGCTGATGATCCTCACAACAGTTTTTGGGAACCTGCTGAtcatcatctccatctctcacttcaAACAGCTTCAGTCTCCAACTCATCTGATCGTTCGCTCTCTGGCTGCCAGTGACTGTCTGCTGGGCTCTTTGGTCATGCCGTACAGCATGGTGCGATCTGTTGAAGGCTGCTGGTATCTGGGAGATGTTGTGTGTAAAGTGCATTCTAGTTTAGACATGAGCTTCTGTATCTCCTCCTTACTGCATCTTAGTTTAATATCTGTTGACAGGTACATGGCCATTTGTGACCCTCTGAGATACAGAATGAGGGTCACAAACAACACTGTGACTGTATTTATCACATTAATatggatgttttcttttctatacAGTTTTTATGTTGTCTTTTCAGGGATAAACACAGTTGGTTTGGAGGCATTCATTATGCAGGTATATTGTGTGGGAAgctgtgtattgttttttaacaaacaatGGGGTCTTATATGTCCAATTGTCACATTTTTCCTTCCTGGGACGATCATGAGTGCTTTGTATATTAAAATCTTCCATGTTGCACGAAAACATGCAAAGATTATGTCAGAAAGAATGACTGGAGGGATGAAGAGTCAAAGCTCTgctcacagagagagaaaagcagctAAAACTCTGGCTATTGTCatgggtgtttttttgttctgctggCTGcctttttttactgttaatgcTCTCGACccttttttcagtttcttcacCCCAGCTGTTGTTTTTGATGCTGTAATTTGGTTTGCATATTTGAACTCCGCTTGTAACCCCTTGATCTATGGGTTTTTCTACCCTTGTTTTCAGAGTGCATTTAAGATTCTCATTTCCACTTATATCTGTGGCAACAAGGTTTCAAACATGacaacatttacataa

Function

symbol description
taar12f Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in olfactory epithelium. Orthologous to human TAAR2 (trace amine associated receptor 2) and TAAR3P (trace amine associated receptor 3, pseudogene).
taar12e Predicted to enable trace-amine receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Orthologous to human TAAR2 (trace amine associated receptor 2) and TAAR3P (trace amine associated receptor 3, pseudogene).

NR:

description
trace amine associated receptor 12f

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0001594 trace-amine receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220548.1 True 1086 mRNA 0.40 1 21935374 21936459

Neighbor

gene id symbol gene type direction distance location
taar11 taar11,LOC107550378,LOC107697081,LOC107733375 coding downstream 16570 21917818 ~ 21918804 (-)
LOC122325446 taar13e,LOC107719422,LOC107550389,LOC107697109,LOC107593251,LOC107685383,LOC107697111 coding downstream 47851 21886498 ~ 21887523 (-)
taar13a taar64,taar13b,LOC107719423,LOC107697110,LOC107550388,LOC107697111,LOC107719422,LOC107697109 coding downstream 50946 21883406 ~ 21884428 (-)
LOC122325436 taar13c,taar13e,LOC107593251,LOC107685383,LOC107697111,LOC107550387,LOC107719422,LOC107697109 coding downstream 55195 21879154 ~ 21880179 (-)
LOC122325342 taar13e,LOC107697111,LOC107550387,LOC107593251,LOC107685383,LOC107550389,LOC107719422,LOC107697109 coding downstream 63610 21870742 ~ 21871764 (-)
bmp2b bmp2b,LOC107742710,LOC107685371,LOC107593250 coding upstream 64754 22001213 ~ 22006248 (-)
chgb LOC107593248,LOC107667615,LOC107756670,LOC107742709 coding upstream 116598 22053057 ~ 22058826 (-)
gzf1 LOC107667619,LOC107600081,LOC107593244,LOC107742706,LOC107756665,LOC107697078 coding upstream 155613 22092072 ~ 22097205 (-)
atad2b atad2b,LOC107697175,LOC107667607,LOC107750077,LOC107742719,LOC107603081 coding upstream 458376 22394835 ~ 22470270 (-)
LOC122324950 LOC107667618,LOC107600078,LOC107750074,LOC107603106,LOC107726759 coding upstream 562286 22498745 ~ 22505802 (-)
G140901 NA non-coding downstream 26015 21908991 ~ 21909359 (-)
G140888 NA non-coding downstream 90353 21844794 ~ 21845021 (-)
G140885 NA non-coding downstream 93029 21842126 ~ 21842345 (-)
G140884 NA non-coding downstream 93340 21841762 ~ 21842034 (-)
G140882 NA non-coding downstream 94609 21840515 ~ 21840765 (-)
LOC122325423 NA non-coding upstream 14287 21950746 ~ 21970149 (-)
LOC122325422 NA non-coding upstream 25737 21962196 ~ 21964129 (-)
G140940 NA non-coding upstream 103106 22039565 ~ 22041112 (-)
LOC122325129 NA non-coding upstream 125113 22061572 ~ 22067308 (-)
G140964 NA non-coding upstream 145065 22081524 ~ 22082617 (-)
LOC122325102 taar14e,si:dkey-246e3.4,LOC107550386,LOC107719394,LOC107550373,LOC107593252,LOC107719391,LOC107719426,LOC107697114 other downstream 88457 21845214 ~ 21846917 (-)
LOC122324884 LOC107550373,LOC107719391,LOC107719393,LOC107719392,LOC107742734,LOC107593252,LOC107579143,LOC107550386,LOC107719394 other downstream 90741 21842432 ~ 21844633 (-)
G140883 NA other downstream 93906 21841113 ~ 21841468 (-)
batf batf,LOC107697118 other downstream 194297 21732544 ~ 21741077 (-)
LOC122324936 NA other downstream 422891 21507244 ~ 21512483 (-)
G140972 NA other upstream 176143 22112602 ~ 22113044 (-)
mcm9 mcm9,LOC107678857,LOC107549683,LOC107743310,LOC107697136,LOC107727573,LOC107603056 other upstream 1448112 23384571 ~ 23401391 (-)
tbc1d32 tbc1d32,LOC107602184,LOC107727650,LOC107675228,LOC107716900,LOC107697130 other upstream 1849293 23785752 ~ 23823050 (-)
G141502 NA other upstream 2068228 24004687 ~ 24006665 (-)
LOC122324315 rbm25,rbm25b,hsp90ab1,LOC107704053,LOC107669447,LOC107732485,LOC107732486,LOC107568216,LOC107704054 other upstream 2317934 24254393 ~ 24517743 (-)

Expression


Co-expression Network