LOC122325519 (plcb1,LOC107663155,LOC108423552,LOC103033987,LOC107678738,LOC107728323)


Basic Information

Item Value
gene id LOC122325519
gene name plcb1,LOC107663155,LOC108423552,LOC103033987,LOC107678738,LOC107728323
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25754500 ~ 25776163 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220555.1
ATGCCCTCTGTAGACTCCCACAGCCTAATTAACACAGTTCTTCCTCTGACATCTGAACAGCTTCCCTCTAATGAAGCAGCAAAGGGTGACTTTCATCTCAGCGGAGCGCTCACCTTTCCAGCCTCCTTCACGAGACTCAAGCTGCAGACGAATCAAGAGGGTCGAATCCCAGTGAAGAAtATATTCCGCATGTTCTCGACGGACCGGAAGCGCGTGGAGACGGCGCTGGAGAGCTGCAGTCTTTCGTCCGGCCGGAACGACTCTATCCCTTTGGAGGATCTGACGCCTGACGTTTACAAATCGTTCATCAACAACCTCTGCCCACGATCTGAGATCAACCAAATATTTGCTGATCTCGGCGCTAAGATCCGGCCGTATCTCACCGTGGAGCAGATGACAGATTTCTTAAACAACAAACAGAGAGACCCTCGTCTGAACGAGATCCTGTACCCACCTCTCAAAGCCGAGCAAGTGCAAGGATTGGTGGAGAAGTATGAGCCTGACAGCATGCTTTCACGAAGAGGGCAGATCTCGGTGGAGGGCTTCGCTAGATATCTGAGTGGAGAAGAGAACAGTATCATCCCTCCAGAGAAGCTGGACCAGAGTGAAGACATGACGCTGCCGCTTTCGCATTACTTCATCAACTCCTCACACAACACTTACCTCACAGCGGGTCAGCTGGCAGGAAACTCTTCTGTGGAGATTTACCGGCAGGTTCTGCTCTCCGGCTGTCGCTGTATAGAGCTGGACTGCTGGAAAGGCCGGACCACCGATGAGGAGCCCATCATCACACATGGCTTCACCATGACCTCAGAGATCTCCTTCAAGgAAGTGATTGAGGCTATCGCAGAGAGCGCCTTCAAGACAACTCCATTCCCCGTCATTCTGTCCTTTGAGAACCATGTGGACTCTCCCAAACAGCAGGCAAAGATGGCTGAGTATTGCAGATCAATATTTGGAGATGCATTGCTCACAGACCCACTGGAGAAATACCCCCTGGAGGCCGGTGTTCCTCTGCCCAGCCCCGTGGACCTGATGGGTAAAATCCTGATCAAGAACAAGAAGAATTCCCACAAAACCGACGGCAGCACCAAGAAGAAACTCTCTGAGCAGACGTCCAACACCTGCAGTGACACGTCCAGTCTGTGTGAGCCGTCGTCTCCCGGCGCAGGTCAGACAGACGCAGATGCAGAGAGTGATGCAGATGAAGATAACGATGAAAGTAAAAAGTCCCTGGATGAGGGGACGGTAAATGAAGCCTTCGCCACAGAGGAGATGTCCAACTTAGTCAACTACATCCAGCCTGTTAAATTCAACTCCTTCGAGGCGTGCAAAAAAATCGATCGAAGTTATGAAATGTCGTCGTTTGTGGAGACCAAAGCCCTGGAGCTGCTCAAAGAATCGCCGGTGGAGTTTGTTGAGTATAATAAACTGCAGCTGAGTAGAATTTATCCCAAAGGGACTCGAGTCGACTCCTCAAACTACATGCCTCAAGTCTTCTGGAACGCTGGATGTCAGCTGGTCGCTCTGAACTTCCAGACCATAGATCTACCCATGCAGCTGAATCTGGGCATATTTGAGTACAACGGGAAATGTGGCTACAGACTGAAGCCAGAGTTCATGCGACGGACGGACAAACAGTTCGACCCGTTCACTCAGAATACAGTAGACGGGATCGTAGCGCACACGCTGTCTGTGAAAATTATATCTGGTCAGTTCCTGTCCGATAAGAGAGTCGGTGTTTACGTGGAGGTGGAGATGTTTGGCCTGCCGGTGGACACCAAACGGAAAGCATTTAAGACCAAGACATCTCAAGGCAATGCCGTCAATCCTGTGTGGGATGAAGATCCAGTGGTCTTCAAACGAGTGGTTCTTCCCACGCTGGCATCGCTGAGGATAGCCGTGTACGAAGACAACGGGAAATTCATCGGCCATCGGATCATCCCAGTATATGCCATCCGACCCGGATATCATTACATCAGTCTGAGGAACGAGAAGAACCAGACGCTGACGCTTCCGTCTGTCTTCATCTACACTGAAGTCAAGGACTACGTCCCAGACACCTTTGCAGATGTGATCGAGGCCCTGTCCAATCCCATCCTGTACATCAGTCTGATGGAGCAGAGAGCCAATCAGCTGGCAGCTCTGACGCAGGAGGAGGGAGCTCAGGAGACCGACAGAGAAGAGGCGGATCCCGGTGTTGAAAACCCTTCGGAGGTCAAAAGCGAGCCCAAACCCGTCCCGGTGGAGAACGGCCTGAGTCACGCTCCCAGCGCCGCTCCGAAGCCAGCGTCTCAGATCAGCACACAGCCGCAGTccacagGCTCCAGCAAACCAGCGGTGAAGACTGAAGATCTGATTCAGAGCGTCCTCACCGAGATGGAGGCTCAGAGCGTGGAGGAGCTCAAACAGCAGAAGGGCTTCGTCCGAGAGCAGAGGCGACACTACAAAGAGATGAAGGACCTGGTGAAGAAACACCACAAGAAGACCACCGAGATGATCAAGGAGCACACGGCCAAATACAACGAGTTCCAGCACGACTACCTGCGCAAGAGAGCCGTCCTGCTGAAGTCTGCCAAACGAGACGGTAAGAAGAGGTGCTTGTCGTCCAGCCCTGAACACGGACCCTCGTTCTTCGAGCAGGAGCTGGTCAGTCTGGATCAGGACAGCGGTCAGAAACTCTCTGAACTCAaagaacagcagcagcagcagctcctcAATCTGCGTCAGGAGCAGTATTACAGCGAGAAGTACCTGAAGAAAGAGCACATCAAACAGGTGATCGAGAAGCTGACGGCCATCGCCGAGGAGAGCCAGAGCAACCAAATGAAGAAAATCAAGGAGCTGTGCGAGAAagaaaagaaagagctgAAGAAGAAAATGGACAAGAAGAGACAAGAGAAGATCAATGAAGCCAAATCAAAGGAGAAACACCTGACAGAAGAGGAGAAGCTGGAGATCAACCGGTCGTACGTGAACGAGGTGGTGCAGCACATCAAGAGGCTGGAGGACGCTCAGACTAAAAGACACGAGAAGCTGGTAGAAACCCATAAGAGCATCCTGCAGCAGATACTAGACGAGAAACCCAAGGTACGACCGCAACAGCTGACCAAAAGAGGATTACCGTCACTGGGGGCCCGACGAAAACCTTAGCAGATAACATTAAAGAAGTGTTTTAGCTCACTTTGGGCTGACCCTTCAAATATCAAGtactctttaaaaatgtaataagctGTCGGGTGTACTTGAATCTCGCCGGGGAAGCGTTTTGATTGGCTCGTGAGCTGTCGCTCGTCAGAAGCGACCAATCGTATCGCGCGGGTTCCTGTAAGCCCGGAGCTCGACGTGTTTTCGTGCTTTCGTGAACGTCGCTCTCTGCACTCACTGTTTAATGCGGACGTGTGTCGAGCTGTGGATATTGACGTGTGTCTGTCGATACTGTCCCGTGTCCCATTAGCCAtcgacccacacacacacacacacacactcacacacattaaCACTTCATGACGATTGTGTTTACAGAGCTCAGTGTTTCCCTTCAAGTCCTCGAATCAAGTTAAgctactttttacatttttcattttgcatcaaatttattttaaattggatACTTTTCGatttattatgcaattatacatatatttattcaatctttttttttacgctCTCGGTAATATTTGCTCTTttcaacttttatta

Function

symbol description
plcb1 Enables several functions, including calmodulin binding activity; phosphatidylinositol phospholipase C activity; and phosphatidylinositol-4,5-bisphosphate binding activity. Involved in cytokine-mediated signaling pathway; phosphatidylinositol metabolic process; and positive regulation of JNK cascade. Located in cytoplasm and nuclear speck. Implicated in developmental and epileptic encephalopathy 12 and myelodysplastic syndrome. Biomarker of Alzheimer's disease; acute myeloid leukemia; and myelodysplastic syndrome.

NR:

description
PREDICTED: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220555.1 True 3702 mRNA 0.50 27 25754500 25776163

Neighbor

gene id symbol gene type direction distance location
trnas-gcu_30 NA coding downstream 120557 25633860 ~ 25633943 (-)
LOC122325306 mgat2,LOC107728126,LOC107564584,LOC107730605,LOC107704380 coding downstream 123565 25626652 ~ 25630935 (-)
hsp90aa1.1 hsp90aa1.1,LOC107704377,LOC107557012,LOC107564585,LOC103024454,LOC106533044 coding downstream 139224 25609316 ~ 25615276 (-)
hsp90aa1.2 LOC100701982,LOC102800076,LOC107378075,LOC103155532,LOC103457915,LOC105909576 coding downstream 145355 25597113 ~ 25609145 (-)
ppp2r5cb ppp2r5cb,LOC107704375,LOC108411434,LOC103025090,LOC108257814,LOC103369946 coding downstream 158316 25576029 ~ 25596184 (-)
pak5 pak5,LOC107659820,LOC107731598 coding upstream 112006 25888169 ~ 25935072 (-)
LOC122324391 LOC107712205,LOC107564326,LOC107659794 coding upstream 167971 25944134 ~ 25959702 (-)
magl NA coding upstream 187820 25963983 ~ 25976828 (-)
lrfn5b lrfn5b,LOC107659815,LOC107564320,LOC107712211,LOC108411613,LOC108257655 coding upstream 260231 26036394 ~ 26049767 (-)
znf410 LOC107659809,LOC107712212,LOC107550151 coding upstream 296242 26072405 ~ 26079546 (-)
G142015 NA non-coding downstream 157688 25474206 ~ 25596812 (-)
G142042 NA non-coding downstream 175239 25514247 ~ 25579261 (-)
G142016 NA non-coding downstream 226539 25523201 ~ 25527961 (-)
G142026 NA non-coding downstream 295268 25457409 ~ 25459232 (-)
G142009 NA non-coding downstream 322814 25430799 ~ 25431686 (-)
G142201 plcb4,LOC107557901,LOC106608066,LOC107659823,LOC107564330 non-coding upstream 62209 25838372 ~ 25865079 (-)
G142260 NA non-coding upstream 230106 26006269 ~ 26010388 (-)
G142261 NA non-coding upstream 234487 26010650 ~ 26012248 (-)
G142245 NA non-coding upstream 241208 26017371 ~ 26033198 (-)
G142242 NA non-coding upstream 242556 26018719 ~ 26055565 (-)
LOC122324601 slc25a29,LOC107678310,LOC107557018,LOC107728117,LOC107564594,LOC106608124 other downstream 492 25747667 ~ 25754008 (-)
G142058 NA other downstream 104407 25648492 ~ 25650093 (-)
mettl24 LOC107738893 other downstream 345725 25294844 ~ 25408775 (-)
wasf1 wasf1,LOC107661360,LOC107556997,LOC107564591,LOC107739187,LOC107667835 other downstream 377084 25326508 ~ 25377416 (-)
rhpn1 rhpn1,LOC107704026,LOC107669421 other downstream 902721 24838652 ~ 24851779 (-)
LOC122324466 samd15 other upstream 274666 26050829 ~ 26054469 (-)
pgfa LOC107712199,LOC107704385,LOC107564316,LOC107659813,LOC107575298 other upstream 312252 26088415 ~ 26096971 (-)
G142281 NA other upstream 409497 26185660 ~ 26187919 (-)
G142278 NA other upstream 455861 26232024 ~ 26234245 (-)
rps29 NA other upstream 707158 26483321 ~ 26560387 (-)

Expression


Co-expression Network