LOC122325520 (LOC107712196,LOC107659793,LOC107564338)


Basic Information

Item Value
gene id LOC122325520
gene name LOC107712196,LOC107659793,LOC107564338
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 25979467 ~ 25980378 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220556.1
ATGGAGGGCTCGTACCTGGACCTCCTGGCTCTGAGGCTGCTCATCTCCGTCCTCGGCGTGCTGGGCAACACGCTCCTCATCGTCTCCATCCTTCAGACGCCTCGCCTCAAGTCCTTCGAGGTCTTCCTCCTGGGGCTGGCCTCGGCCAATCTGGAGGAGATCGTGGTCGTGGACGTCTACGACATCCTGCTGTCGCGCACCGCCCGCAGGATCAGCATCTGGAGCTGCCGGGGCCTGAAGTTCCTCACCATCCTCGGGGAGATCTCCAGCATCCTCTTCACGGCGCTCATCAGCATCTACCGCTATCAGAAGCTGCGGGACGTCCAGACGCGGGTCAGTCTCCCGGTCTTCATGGACGGCCTGCGCTCGGCCGTGCTCCTGGTGGTCTTCTGCGGAGCCGTGGCTCTTGTCTTCAGCCTGCCCACGCTCCTGGTCAACCTGGACTGGAGTCAGCTGAACTCCTCGACTCTGGGCTGCCCGGCCGATTTCTTCCAGTGCTCGTTCAGCAGATGCCCGACTCGGAACCGCGTCTACAAGTACTCCTTCCTTCTGGTGTGTAACGTGCTCCCGCTGCTGACCGTCACGCTGACCAGCTCCATGATCGCCAGGATCTTGATCGTCCAGCAGAAGACGGTCAGGTCCCGGCAGGCCCCGAGCGCGAGGCAGCAGGGGCCCCGGAGATCGTCCTTCTATCGCAGCACTCTCTCCATCCTGACCGCCATGACTCTGTTCCAGCTCAACTGGACCGTCTACCTGTTGCTTCACCTGGCCTTTGACCCCGGCTCCGTCCCTCTGTGGTCAGAGTTTGAGTTCTTCATCACCACCTTCTACAGCGCGGTCAGTCCCTACGTCTACGGGATCGGAAACAACCTGTTCAGCGTGAAGCGCTTCCTTAGGAAAGCTTCCAGCTAG

Function

NR:

description
PREDICTED: uncharacterized protein LOC107712196

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220556.1 True 912 mRNA 0.61 1 25979467 25980378

Neighbor

gene id symbol gene type direction distance location
LOC122324467 LOC107564327,LOC107712204,LOC107659822,LOC107712203,LOC108411733,LOC108258090 coding upstream 36182 25939571 ~ 25943285 (+)
lamp5 lamp5,zgc:165600,LOC107704368,LOC107557889 coding upstream 90618 25879511 ~ 25888849 (+)
plcb4 plcb4,LOC107564330,LOC107659823 coding upstream 104039 25831015 ~ 25875428 (+)
LOC122324600 myh6,smyhc2,LOC103031694,LOC102786665,LOC108251423,LOC107589804 coding upstream 231849 25741291 ~ 25747618 (+)
dio3b dio3b,LOC107704370,LOC107557013,LOC107728129 coding upstream 435942 25540213 ~ 25543525 (+)
LOC122324854 LOC107575530 coding downstream 2434 25982812 ~ 25994094 (+)
yy1b LOC107756049,LOC107704390,LOC107712210,LOC107659816,LOC107564321 coding downstream 44483 26024861 ~ 26030986 (+)
entpd5b entpd5b,LOC107756050,LOC107704388 coding downstream 74743 26055121 ~ 26069045 (+)
LOC122324376 clg18h14orf37,cunh14orf37,c25h14orf37,LOC107574488 coding downstream 205298 26185676 ~ 26194962 (+)
prpf39 prpf39,LOC107704382,LOC107659803,LOC107713858,LOC107567385 coding downstream 238201 26218579 ~ 26229745 (+)
G142145 NA non-coding upstream 11131 25967720 ~ 25968336 (+)
G142133 NA non-coding upstream 16847 25943346 ~ 25962620 (+)
G142119 NA non-coding upstream 17995 25911376 ~ 25961472 (+)
G142139 NA non-coding upstream 25296 25953800 ~ 25954171 (+)
G142107 NA non-coding upstream 85750 25891158 ~ 25893717 (+)
G142157 NA non-coding downstream 68093 26048471 ~ 26054584 (+)
G142086 LOC107756052,LOC107575297 non-coding downstream 94753 26075131 ~ 26076630 (+)
G142104 NA non-coding downstream 96724 26077102 ~ 26078124 (+)
G142087 NA non-coding downstream 99803 26080181 ~ 26083938 (+)
G142095 NA non-coding downstream 122433 26102811 ~ 26134775 (+)
LOC122324336 LOC107564333,LOC107557900,LOC107659797,LOC107712192 other upstream 150552 25776475 ~ 25828915 (+)
fig4a fig4,fig4b,LOC107667833 other upstream 668040 25250898 ~ 25311427 (+)
G141775 NA other upstream 756358 25221967 ~ 25223109 (+)
irf4l LOC107572583,LOC107739192,LOC107671083,LOC107557006,LOC107661363,LOC107728105,LOC108443244 other upstream 811046 25163981 ~ 25168421 (+)
LOC122325234 tsta3,zgc:153776,LOC107672947,LOC107655839,LOC107559101,LOC107728120 other upstream 984630 24968880 ~ 24994837 (+)
LOC122325160 LOC107564323,LOC107659819 other downstream 16036 25996414 ~ 26002923 (+)
evlb evlb,LOC107756048,LOC107704391,LOC107564322,LOC107659817,LOC103152656,LOC105929101,LOC106954543,LOC106922124,LOC107090853 other downstream 23385 26003763 ~ 26024232 (+)
G142173 NA other downstream 255043 26235421 ~ 26257234 (+)
G142333 LOC102197881 other downstream 498173 26478551 ~ 26479201 (+)
G142416 NA other downstream 922869 26903247 ~ 26905157 (+)

Expression


Co-expression Network