LOC122325537 (LOC107698338,LOC107555613,LOC107726610)


Basic Information

Item Value
gene id LOC122325537
gene name LOC107698338,LOC107555613,LOC107726610
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 17453042 ~ 17455437 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220573.1
AAGACTGAGACATCGAGGTTTCTATTAAGATCCTTCATGTGTTCTTACTTCTGTTGTCATAAATATGTACCACAGTTATTTTCTAACACTTGCAGTGCTACACGGTTGCTTTGATTCTACGCAGAGTGTTTCGCACCCAGGAAAATGCAGACATGACTTCGGATCTGATGAGGTCCAAGTCAATTGTATGTCTGTTAACTTCAAAGAGTTACCCAGCAAGGCCTTCCCAGGTAACACTACAGACCTCAGTGTCCGCTTCAGCAATTTAAGCTCAATAACATCCGATGACCTGAAGATCTTGTCCCATCTGAGGCAGCTCAGTCTGATCAGAAACCAGCTGCCTGTACTACCTGCGGACCTGCTTTTGGGCCTGTCTAACCTTCAAGTGCTTGACCTTACAgGTAACAAACTGACAGCTTTATCGTCGCGAGTGTTTCATCATTCCCCTCTTGTGGAGCTCGCGCTCTCAGATAACCTGCTTTCTGAGATAGATGCCGACTGTCTGCCTGTAAACAGCTCTCTCCGGAGGTTAGATTTATCGTCTAACAGATTCACCCAGCTGCCCGTGGCCTTCCTGCAAAGACTAAATGATCTTGAGAGCTTAGATTTAAGAAACAACCAGCTGGAGGAACTGGCTCCCGGAGCCCTGATCTCTCTGCCCAAACTTGAGGCTCTGTACCTGGAAAACAACAGACTGAAGTCTTTAGATGCATCAGCTTTCATTGGTAACCCAGCCCTTCGCCAGATGTTCTTGAGTGGCAACCGTTTGGAGAACCTGCCTGCTGGAATCTTCCTCAAGCAGGAAGAGCTCGTTTTCCTTGACCTCAGGAACAACTATCTGCAAAACCTGACCCCAGGTGTCCTGGATGGACGCCTGTATGCTGCGCTGTCTGGTAATCCATGGCACTGCAACTCTAGTTTGGCGTATCTGTGGCGCTGGACGCGTGTGAACGGAAAACGGATTTTTCATGCTGGTAAAATCGCTTGTCAAACACCTGAACACATGAAGGGTAGAAATATCAGTGAAATTGCTGCCACAGAGCTCGGTATCAGGGACTAAGAAAATcatctaatcaaataaatacatatatagctATTTTGAAACCttgtaaatactttaaaaaccgtaaaagaagaaatatttatttacaaaatgattagaaattcatattttttgattgtattgttatagttttaaaaattgttgtttttttttttttaatttttaatttcctttagaGAACTAACTTAATCCAAATAGCCTATTTTgatacttatatatttaaagaaagaaagcctGGTGTTGGTCAGCAGAGGGCGCTAAACTCTTATCAAAATAATTAGAGGTACCTACTGCATGTCTTGAGGGAAGTGTGGtttcacacttttatttttaaatgtgttctcTTTTATaactgttctgttttgtttctgttatatgtttttttttttttttttttttttgtt

Function

NR:

description
PREDICTED: leucine-rich alpha-2-glycoprotein-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220573.1 True 1467 mRNA 0.41 2 17453042 17455437

Neighbor

gene id symbol gene type direction distance location
paplnb LOC107698340,LOC107555612 coding downstream 13031 17428506 ~ 17440011 (-)
smek1 smek1,ppp4r3a,LOC107726626,LOC107555622,LOC107696138,LOC107698404,LOC107601285,LOC107726461 coding downstream 28231 17414467 ~ 17424811 (-)
nbas nbas,LOC107602494,LOC108439588 coding downstream 166150 17152343 ~ 17286892 (-)
nr2e1 nr2e1,LOC107602776,LOC107726424,LOC107726614,LOC107601200 coding downstream 461239 16984344 ~ 16991803 (-)
afg1lb lace1b,LOC107679503,LOC107726636,LOC107601203,LOC107726402 coding downstream 483001 16949429 ~ 16970041 (-)
rock2b LOC107555625,LOC107698402,LOC107696174,LOC107726463,LOC107726633 coding upstream 300 17455737 ~ 17481534 (-)
fam102bb fam102bb,fam102b,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding upstream 44042 17499479 ~ 17515480 (-)
atf6 atf6,LOC107555632,LOC107698395,LOC107710557,LOC107726471,LOC107601246,LOC107696152 coding upstream 68181 17523618 ~ 17554947 (-)
LOC122324570 LOC107579823 coding upstream 130947 17586384 ~ 17595986 (-)
LOC122324572 NA coding upstream 141956 17597393 ~ 17602425 (-)
LOC122324490 NA non-coding downstream 43547 17396342 ~ 17409495 (-)
G139323 NA non-coding downstream 57044 17394864 ~ 17395998 (-)
G139317 NA non-coding downstream 116722 17336007 ~ 17336320 (-)
G139302 NA non-coding downstream 327132 17125437 ~ 17125910 (-)
G139301 NA non-coding downstream 327794 17124823 ~ 17125248 (-)
LOC122324574 NA non-coding upstream 100418 17555855 ~ 17559470 (-)
G139386 NA non-coding upstream 159711 17615148 ~ 17615699 (-)
G139387 NA non-coding upstream 160356 17615793 ~ 17616508 (-)
G139565 NA non-coding upstream 333761 17789198 ~ 17794072 (-)
G139567 ivns1abpa,LOC107696153,LOC107726450,LOC107732388,LOC107553504,LOC107683098,LOC107599089 non-coding upstream 340047 17795484 ~ 17799866 (-)
erh erh,ERH,LOC107580641,LOC105904210,LOC100699790,LOC106607637,LOC101174968 other downstream 24919 17346806 ~ 17428123 (-)
G139030 LOC107732636,LOC107693214,LOC107549128,LOC107726455,LOC107601514,LOC107696115 other downstream 990826 16455468 ~ 16462216 (-)
fndc1 fndc1,LOC107693219,LOC107732645,LOC107549078,LOC107726397,LOC107696111 other downstream 1086243 16347201 ~ 16366799 (-)
LOC122324507 sash1,sash1a,LOC107732642,LOC107601490,LOC107693212,LOC107696119 other downstream 1348315 16017318 ~ 16104727 (-)
LOC122325494 LOC107693148,LOC107734075,LOC107594136,LOC107710410,LOC107653994,LOC107552018 other downstream 1459397 15990149 ~ 15993645 (-)
swt1 swt1,LOC107698376,LOC107732364,LOC107696141,LOC107726449 other upstream 345965 17801402 ~ 17824201 (-)
adgrf3b LOC107732426,LOC107698325,LOC107553480,LOC107696096,LOC107601465,LOC107719098 other upstream 888026 18343463 ~ 18350122 (-)
G139706 LOC107683600,LOC107601464 other upstream 950590 18406027 ~ 18446949 (-)
batf3 batf3,LOC107558935,LOC107676231,LOC107553434,LOC107727593,LOC107675089 other upstream 1799297 19254734 ~ 19256272 (-)
LOC122324949 LOC107676261,LOC107727654,LOC107553459 other upstream 1806029 19261466 ~ 19262952 (-)

Expression


Co-expression Network