CI01000001_11182552_11204143 (NADL1.2)


Basic Information

Item Value
gene id CI01000001_11182552_11204143
gene name NADL1.2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11182552 ~ 11204499 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_11182552_11204143.mRNA
TGAAAAGCCCCCCAGTGATTACCGCCCAGCCAGAGTCAGTCACCACCTTCTCAGCAGATGACATCACACTCACCTGTGAGGCAACTGGGAATCCCCCACCCACGTTCCGCTGGGTGAGAGATGGTGTGGAGTTTGACCCCTCTAAAGACCCTGACCTCTCAGTGTCCAGAGATTCTGGGACCTTCTCGTTGACAGCCAAGGATGGACCCATCCACCAATACCAGGGCAGATATAACTGCTACGCATCTAACGAGCTCGGCACGGCGGTGTCTAACGAGGCTCGTATTGTCACAGAGATCACACGAGCACTTCGAGAGAATTCCAGAACGAATATAAATCCCAGATTGCTTCCCAAATCGCTATCAAACACAACACTGAGCGGCTCATTGTACAAAAACAACAACAAACAACGACAACACATCTATCTAGCAATCTACCTGTCTCCCTTCCTCTGTCCCGACCTCTTTGCCAGTTTCCCTGACAACAGTTACCTCAGAAACCAGTGTGAGTCGTACACTCCCACTCTACAGAAGGAGAAGAAGGTGATAAAGAAGGTGGAGGAAGGAGAGAGTGTGGTGCTTCCCTGTAATCCTCCTAACAGCACCGTGGCCCCGGTCATCCACTGGATGGACAAAAGGCTGCGGCACATTCAGCAAAACGAGCGTGTGATTCAGGGTCGCGATGGAAACTTGTACTTCTCTCATGTGATTGCGGCAGACAGCCGAGAAGACTACACCTGCAACACTCAGTTCCCCAGCGCACGCATCATCGTGCTCAAAGAGCCCATCAAACTCACTGTTGTCCCCTCTAACTCAGTGCGTAACAGAAGGCCTCAAATGATGCGACCCACTGGCTCCCACAGCTCCTACCTGGTGCTCAGTGGCCAAAGCCTAGATCTGGAATGCATTGTTCAGGGCCTGCCCGCTCCCAGTATCCAGTGGATCAGGAAAGATGGAGTTCTGTCTGAGTCACGCACCTCCAATGACAATTATAACAGAGTTCTGCGTTTTATGAAAATCTCAGAGTCTGACGGCGGCGAGTACCAGTGTACCGCCACAAATGTGCAAGGCATGATAACTCACACCTACAGCATCACTGTGGAAGCTGCCCCATATTGGACTAAAGAACCAAAGAGCCAGCTGTACGCCCCAGGAGAGACGGTCAAACTGGAATGTGAGGCTGATGGCATTCCAAGCCCTGAGGTCACCTGGAGCATCAACGGCAATCTTCTTACTGATATTGACCCAGACCCTCGACGCAGTCTGAAACATGGTGTTCTCACTCTGAAGAATGTGGAACTCGGCGACACTGCGGTGTATCAGTGTAAAGCTGCCAATAAGCACGGATCTATCCTCATCAATGCCTACGTCTATGTTATAGAACTGCCTCCCCAGATTCTGACAGAAGACGGTCTCCTGTACTCTGTGGCAGAGGGACAGACGATTGATCTGGCTTGCGAGACCTTTGGCTCTCCTCAGCCCAATGTCACATGGGAGGGTGAGTCCTGGGGCGCACTTATAGCCAACCCAAGGATGAGTCAGTTATCCGATGGCTCTCTACAGATCAGAAACGCCTCCCGTAATGACAGCAGCCAGTACACCTGCACTGTCAGCAACAGCAAAATCACCATCACCGCTGAGCTGGATGTACTCAATAAGACAGTGATTGTGAAACCTCCGTTGGCTCTGCGGATTCAGCAGGGGCAGTCAGCGACCCTAACCTGTGAGTACCAGGTGGACTCCAGGCAGGTTTCCCCTCAAATCCAGTGGAGGAAGAACCGACAGAAGCTCACAGAGTCCTCTGATTCAGACAACTACGTGATAGATGAATCCACCCTCATAATACCTGATGTTGAAGAAGAGGATGAAGGGATTTACACCTGTGAAGTCATTACCACTCTGGATATGGCAGAAGCGAGTGGCTCCATCACTATCGTTGACCGACCAGACCCTCCGACCCAAATACAGATGACCGAACCTAAAGAACGCAGTGTCACACTTAGCTGGACACCTGGAGAGGATCACAACAGCCCTGTGCTAGAGTATTTGATCGAGTTTGAGGAGACGGGATCTGAAAGAAAGGAATGGGAGGAGCTAAGCCGCGTGTCTGGCAGCATTCAGCGAACTACCCTTCCCTTGAAGCCCTTCATTTCTTACCGCTTCCGAGTCATCGCCATCAATGACATCGGCAAGAGTGACCCGAGCAAGGAAACGGAGGCCTATTCCACACCAGCTGCTCCTCCAGACAGCAACCCTGAAGGAGTGCGCAGTGATTCCATCGACCCAGGCACCCTTGTCATCACATGGAAGGAGTTGGACAGGCGGAGTTTCAACGGCCCAGATTTTCGCTATAAAGTGATGTGGAGGAAAGTTTTGGGCAGCGGTCCGTCCTGGCACACCAAATACATCACCTCTCCACCCTTCATCGTCACAGATGTGGGCAACTTCTCTGCCTTTGACATTAAAGTGCAAGCTGTTAATGAGATGGGAGAAGGTCCAGAGCCCAAATCCGCCATTGGATACTCAGGAGAGGACTACCCTCTGGAGGCCCCTCTGGATGTGGGAGTGGTTCTGATCAACAGCACTGCTATTAAAGTCACATGGGCGCCCGTGAACAAAGAAACTGTAAGGGGCCGTCTGCAGGGTTACAAGATTTATCTGCTGCACTTTGGCCCAGAAAGCAGACACCTCAGACGGGAGCGTGTTAGGGAGGGGAAGCCGACAAACACCTCAGTTGTGACGACGGACAGTAATGAGGAGAAGAAGATTCTGGGAGATTTGCAGCCCTACTCCCATTACGCACTGGCTGTAAGTGTCTTTAATTATAAAGGAGAAGGACCCCAGTCTGAGCCCCTCACTTTCCACACTCCAGAAGGAGTTGATAATGAAAACAGTCTTATGCAGGTAGAAAAGATTAGTGACCATGCCAAGAATCACTTCACGTTAAAGCTGGACCCTCGCAGCCGTTACCGCTTCTACCTGCGGGGATACACGGCTGCTGGAGAAGGACTGCCAATCATTAGGGAGGGAGCTACCACACTGGATGGAGGTCCACCCTCCAACATTAGCTTATCGATTGGAGAGACATCCGTCAACCTGACCTGGGTGTCGAAAGAAAGACAGCGGAACGTGGGATTCCTTATTCATTACCTGAGAGGGGATGGCAAAGGCAAATGGAAGCACTCTGAAAAAGTAAACAGCTCTCAGTCTTTCTACACGCTGCAGGGGCTCCAGCCCGGATCCCAGTACCACCTGCGGATTGACTTAGGAAACAAGACTATATGGACGGATAAGATTCAGACAGCTGGAACATTAGTCATGGAGAAACGTGATGGGTTTGTGACTGAAAGCTGGTTCATTGGACTCATCAGCGCCCTTGTGTTGTTGCTGCTGGTACTGCTCATTCTCTGTTTCATAAAACGAAGCAAAGGTGGAAAATACTCAGTTAAAGAGAAAGAAGAAGGCCAGATAGATTCTGAAGCTCGGCCGATGAATAATGAGGCTTTTGGAGAGTACAGTGACATCGAGGAGAAGCGAACGGCCAGTCAGCCGTCTCTGTGTGAGGACAGTAAACTATGTACCGACGATGCTCTAGACGACTATGCCAACAGCAACAGCGTGCAGACCGAGATCCTCATGGACGAGTCGCTGGCCAGTCAGAGCAGCGGCATCCGAGATGTTCCTGAAACTCAGGAAAGTTCCCCTCTAAATCCTGCCACAGCCATCTCCCACCTCGGCCTGCCCAACTCCGCCGCCTTCCTTGACTAGCCGGGCGAGCCCAAGACCAAACGTGGATTCACACATGTGCCCACCTGTTGCAACCGCTCATGATTAACCAAATAATCGAAAACCCACAATAATGAGACCTACACACACAACAGATGCCAAGAAAACCTACCAGAGCCACTGCTGGAACTTACTTCAGACGTAATTGGACCAACACAACACTTTTAACACAGCCAGAGGAAAACATTCGACAGACATATAACAAATAGACTGCCATGCTCGTTGTTTACAGATATTATCTCTCATTTTGCGATATAAAATAGGCTATAGCAGTTTACAGTTATACAGACGTGACAAGAACATCTCCAGAAGAGACTTCTTTGATAATCCGGTGAAAA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K06550 L1CAM, CD171; L1 cell adhesion molecule

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_11182552_11204143.mRNA True 4123 mRNA 0.50 25 11182552 11204499

Neighbor

gene id symbol gene type direction distance location
CI01000001_11138617_11139541 NA coding upstream 42879 11138285 ~ 11139673 (+)
CI01000001_11099313_11137500 HUWE1 coding upstream 44274 11099313 ~ 11138278 (+)
CI01000001_11019871_11028065 MYL6, MYL6B coding upstream 154028 11019479 ~ 11028524 (+)
CI01000001_10989337_10992917 BIRC5B coding upstream 189574 10989337 ~ 10992978 (+)
CI01000001_10968536_10981345 NA coding upstream 200765 10968344 ~ 10981787 (+)
CI01000001_11216246_11230227 SMC1A, SMC1A.L, SMC1AB, SMC1AL coding downstream 11747 11216246 ~ 11230321 (+)
CI01000001_11232168_11238289 SRM coding downstream 27669 11232168 ~ 11238655 (+)
CI01000001_11246797_11247315 CORT, SST3 coding downstream 42150 11246649 ~ 11247541 (+)
CI01000001_11265638_11283027 MASP2 coding downstream 61139 11265638 ~ 11283236 (+)
CI01000001_11359106_11376288 NA coding downstream 154607 11359106 ~ 11376885 (+)
G19121 NA non-coding upstream 56393 11070904 ~ 11126159 (+)
G19130 NA non-coding upstream 196086 10925528 ~ 10986466 (+)
G19034 NA non-coding upstream 285647 10892437 ~ 10896905 (+)
G19088 NA non-coding upstream 307681 10874670 ~ 10874871 (+)
G19087 NA non-coding upstream 308319 10873982 ~ 10874233 (+)
G19096 NA non-coding downstream 50570 11255069 ~ 11304024 (+)
G19108 NA non-coding downstream 177075 11381574 ~ 11381987 (+)
G19258 NA non-coding downstream 183144 11387643 ~ 11387959 (+)
G19259 NA non-coding downstream 185056 11389555 ~ 11389858 (+)
G19266 NA non-coding downstream 223605 11428104 ~ 11493856 (+)
G19039 NA other upstream 328569 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 642706 10538388 ~ 10539846 (+)
G18937 NA other upstream 706163 10474984 ~ 10476389 (+)
CI01000001_10395420_10396473 NA other upstream 785847 10394851 ~ 10396705 (+)
G18872 NA other upstream 901183 10271146 ~ 10281369 (+)
G19314 NA other downstream 296695 11501194 ~ 11558673 (+)
G19395 NA other downstream 476823 11681322 ~ 11681817 (+)
CI01000001_13514115_13517063 NA other downstream 2308905 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021749 l1cama coding NC_007134.7 CM002907.2 28582865 ~ 28681775 (+)