rasl11b (rasl11b,LOC107601936,LOC107755225,LOC107718428,LOC107683996,LOC107665415)


Basic Information

Item Value
gene id rasl11b
gene name rasl11b,LOC107601936,LOC107755225,LOC107718428,LOC107683996,LOC107665415
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 11604630 ~ 11607753 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220584.1
AAGTACAGTCTTGGTGTTAGTAACTAAGAGGAATATTGGAGATATTCTCCGACCTTATCTCTGAAAGACAGCATCTGCGTGTACGCGATTCTGACAGTACTTTTACGGCGTCTGTGGATATTTTGTCCTCATTTTCCGTTGTAGGCGTTGGATCGTATCGTTGTTTTCGCCAAAATGCGTCTGATCCAGAACATGTCCACCATTGCGGAGTACCCCAGCGCCGAGTGCCCGTCCAGCCGGGTCATTAAAATCGCAGTCATCGGCGGCAGTGGAGTGGGCAAAACCGCGTTGGTGGTTCGTTTCCTCACTAAGCGGTTTATTGGTGACTACGAGAGAAACGTCGGCAACCTGTACAACAGAGAAGTGCAGATAGAGGGAGAACAAGTGGCCATTCAAGTTCAAGACACACCTGGAGTTCTTGAAgtGAACGCTAATGGATTGAGCTGCACTGACCAGGTATCTCGCTCCATTCAGTGGGCAGATGCTGTAGTTATGGTCTATTCTGTTACCGACTGCCGAAGCTTTGATCTCATTGGCCAGCTGCACCAGCTGGTTACCCGCACCCATACGGATAGGCCAATCATCCTGGTGGCTAATAAAGCCGATCTCCTCCACGTAAGGCATGTAGATGCTCAAGAAGGTCCCCTGTTGGCTTCAGCGCTGGGCTGCTCCTTCTACGAGGTGTCCGCCAGCGAGGACTACAGCCAGGTCCACGGTGCCTTCCACAGACTGTGCGTAGATCTGGCCAAGCAGCAGCCTCAGGTCCCCGTCAACGCAGCTTCATCTGGAACAGAGAAGAAAAGATCTCCCCTCATCCCCCGGCCCAAATCCCCCAACATGCAGGACCTGAAGAGGCGCTTCAAGCAGGTGCTGTCCGCCAAGGTTCGGACCGTCACTTCAGTGTGAAGAGGGTTCGAGATACCagcaggagagaaaaaaaaagcgcagGATTAAGAGAGAGGAAGCTCTGAGGAGAGGAGAAGATCTCTCTGAATGTGTAGGTCTCGCTCCTTGGACGTTCCTGAGATCCGTTGATGATCAGCAGACCGGTTCCAAACAGAGGCCCCTGAAGCTAGACCTCTGATTGCGTCATGGTcgctgaaaaacaaacagacagagtccGGTGAAGTCTTACATTTTCACCAGCGCTGGTGGACACTTGCTTTCACTTATATCCATGTGGACACGGCAGGATTCTGAGAGACGCGGTGGTAGTTCCTCGCAGAGGGACGGTGCAAAGACAGAATGACTGAACCGAACACACTAAAACACTAGTATTAACACTCTGCCTTACCTGTGAAATTTTAAGACAAGTTCTACTGACAACAGAGACGGTGAAGGCATGAAAAACAGACTATTTTAAGAATTGCTTTTATGAAAGGCAtgggagagagagtgagtttTTTGTTCCTTCTTTTGGTCAAGGCTTTTACGGTCTGAATGCAGGCATTGTTAAAGGACAAGGCACTCAAGTTAAGCGtataaagagagagggagagagtgtatCTTTTACAGTCCTACTCTCGTGTACAAGGCCAGAATGATTCTCCTGGTTTTGTGTAACTGTGCTTTGTGCCACTTTTCTATAATGGAGTAGAAGAGATTTTTCTTGTGTAAATGCACTTTAATAAAGCCAAAGGGCTGAAGCTcagagttatttatttatgttatttcattGTGATTGGAAATAAAgggtttttttacaaaaa

Function

symbol description
rasl11b Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within mesendoderm development. Predicted to be located in membrane. Is expressed in several structures, including axis; central nervous system; presumptive ectoderm; shield; and tail bud. Orthologous to human RASL11B (RAS like family 11 member B).

NR:

description
PREDICTED: ras-like protein family member 11B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0048382 mesendoderm development biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07853 RASL11B; Ras-like protein family member 11B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220584.1 True 1709 mRNA 0.48 4 11604630 11607753

Neighbor

gene id symbol gene type direction distance location
fip1l1a fip1l1a,LOC107601903,LOC107665400,LOC107718393,LOC107597463 coding downstream 98303 11484137 ~ 11506327 (-)
pdgfra pdgfra-2,pdgfra,LOC107683957,LOC107601905,LOC107718396,LOC107597438,LOC107755213,LOC107665286 coding downstream 244591 11339863 ~ 11360039 (-)
kita LOC107755246,LOC107683958,LOC107601906,LOC107718397 coding downstream 284711 11301144 ~ 11319919 (-)
si:ch211-142k18.1 si:ch211-142k18.1,LOC107723504,LOC107589090,LOC107697312,LOC107746370,LOC107563691,LOC107701470 coding downstream 537224 11061914 ~ 11067406 (-)
trnal-cag_34 NA coding downstream 671986 10932562 ~ 10932644 (-)
spata18 LOC107683994,LOC107601933,LOC107755228,LOC107718421,LOC107597473 coding upstream 61387 11669140 ~ 11676651 (-)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 85029 11692782 ~ 11704023 (-)
ociad1 ociad1,LOC107597445,LOC107718385,LOC107601931,LOC107755252 coding upstream 105189 11712942 ~ 11716297 (-)
zar1 zar1,LOC107755254,LOC107683947,LOC107718383,LOC107597447,LOC107601952 coding upstream 187645 11795398 ~ 11796899 (-)
slc10a4 slc10a4,LOC107601950,LOC107718427,LOC107683944,LOC107597446,LOC107665333 coding upstream 190267 11798020 ~ 11801524 (-)
G137644 NA non-coding downstream 377265 11215226 ~ 11227365 (-)
G137621 LOC107739294,LOC107553647 non-coding downstream 409783 11191659 ~ 11194847 (-)
LOC122325111 NA non-coding downstream 489705 11113796 ~ 11114925 (-)
LOC122325152 NA non-coding downstream 667256 10934946 ~ 10937374 (-)
G137588 NA non-coding downstream 797850 10806521 ~ 10806780 (-)
G137751 NA non-coding upstream 4270 11612023 ~ 11613622 (-)
LOC122324332 NA non-coding upstream 15840 11623593 ~ 11631094 (-)
G137748 NA non-coding upstream 20871 11628624 ~ 11631015 (-)
LOC122325628 NA non-coding upstream 21375 11629128 ~ 11629249 (-)
LOC122325626 NA non-coding upstream 21967 11629720 ~ 11629841 (-)
gsx2 gsx2,LOC107601899,LOC107597471,LOC107683998,LOC107755223,LOC107718430 other downstream 236140 11366923 ~ 11368490 (-)
LOC122325476 cdh2,-,cdh4,LOC107561048,LOC107746014,LOC107571545,LOC107701519,LOC107684812,LOC108416271,LOC107656023,LOC107590155,LOC107728629,LOC107739294,LOC107553647 other downstream 422447 11141945 ~ 11182183 (-)
LOC122324412 nme6,LOC107589089,LOC107697297,LOC107723520 other downstream 468018 11131424 ~ 11136612 (-)
G137469 tdh,LOC107561940,LOC107723287,LOC107684809,LOC107589050,LOC107701506,LOC107746115 other downstream 880561 10721921 ~ 10724069 (-)
G137451 NA other downstream 1033893 10567297 ~ 10570737 (-)
G137773 LOC107755215,LOC107683983,LOC107601925,LOC107718419,LOC107665290,LOC107597464 other upstream 74652 11682405 ~ 11683318 (-)
G137967 mdn1,LOC107601919,LOC107755265,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other upstream 611010 12218763 ~ 12219639 (-)
G137949 mdn1,LOC107755265,LOC107601919,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other upstream 615057 12222810 ~ 12224270 (-)
mdn1 mdn1,LOC107755265,LOC107737285,LOC107597457,LOC107683937,LOC107665348,LOC107601919 other upstream 634048 12241801 ~ 12280312 (-)
LOC122324483 NA other upstream 1653166 13260919 ~ 13264284 (-)

Expression


Co-expression Network