mgat2 (mgat2,LOC107728126,LOC107564584,LOC107730605,LOC107704380)


Basic Information

Item Value
gene id mgat2
gene name mgat2,LOC107728126,LOC107564584,LOC107730605,LOC107704380
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 26563656 ~ 26565704 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043220601.1
TCCCGAATCGTTTCTGCGACCGTCCCGCGAGGCGACTGCCTATCATGAGATTCCGAATTTACAAGCGTAAGGTGGTAATACTGACTCTAGTGGTGGTCATCTGCGGGTTCGCCGTCTGGAATAGCGGGAAACCCAAGAAGGCGAGCGCCGCCGCGTTTCCCAAAGAGACGGAAGCAGGCAAACGGAGCAGCGTTGGCGGTCAACTCCAAGTACAGGTCACGATCCCGGTAACCCGTAAGCCCGTCAACGAAACGCTTCCGGAAAAACAGCAATTACAAATCCAGGCAGCTGCCAAATCCGAAGTGGACAACGCAACTCTGGTGTACCGAGGAATCGTCTTTCAGCTCAACTTCGACCAGACCCTAAGAAACGAGGAGAAATTTCGCTCCCTGCGGCAGAAGGACGACTTGGTCGTCGTCGTCCAAGTTCACAACCGCCCCGAATACCTGCGCCTGCTGGTGGACAGCTTGAGGAAATCGAAAGGAATCGAGAACGTCTTGCTGATATTCAGCCACGACTTCTGGTCGCCGGAAATCAACCGGATCGTGGCGTCCGTCGACTTCTGCTTGGTCCTTCAGATATTCTTCCCTTTCAGCATCCAGCTCTACCCTCAAGAGTTCCCCGGGAACGACCCCAGGGACTGCCCTCGAGACATTCCCAAGAAAGATGCCTTAACCCTGGGCTGCTTAAACGCGGAGTACCCGGACTCCTTCGGACACTACCGGGAAGCCAAGTTCTCGCAGACCAAACACCATTGGTGGTGGAAGCTGCACTTCGTTTGGGATCGAGTCCGAGTCTTGAAGGAGCACCGAGGACTCTTATTGCTCATCGAGGAGGACCACTACCTCGCCCCCGATTTCTACCATCTCCTCAAACTCATGGCCTCCCTCAAGAAAGAGCAGTGTCCCGACTGCGACATCTTATCCCTAGGGAGCTACGGACACGTCGGCTACTCCAGCAAAGCCAACAAAGTGGAGGTGAAGGCGTGGAAGTCCACCGAGCATAACATGGGAATGGCGCTGAACCGAGACACCTACCAAAAACTCCTCAGATGCACCGATGCCTTCTGCACCTACGACGACTATAACTGGGACTGGTCGTTGCAGCACCTTACCGTGACCTGTTTGCCCGCGTTCCTGAAGGTCATGGTCAGCGAGGCGCCCCGCGTCTTCCACGCCGGCGACTGTGGCATGCACCACAAGAAGTCGGCTTGCATGCCGTCCAGCCAGAAGACGAAAATTGAGAATGTTCTCCAGAGCAGCGGGAACCAGTTGTTTCCCAAACAGCTGCTCATTACAAAGAGACTCCCAGCTTCCGGAGCCAAGGGAGTGGCTCCTCACGTCAAAAACGGAGGCTGGGGAGACATCAGGGACCATGAACTCTGCAAGAGCTACCTTCGATTGCAGTgactttgtattgtttttgttgtttgtttgttgttgtttttttttgcatcctctaATGAAAGCCTTTAAAAGTTCTTAACGGACTATTTCTTCCTATTGCCTGTTTTATTGAgatattccaaataaaaaaagtatgtgaCGTTTGGATTTGGTGGTTATGAGCATCATTGAAGTATTATCACTGTTGTCATATTATCTattattaaacagcatttttgtgcCATTTCGGAGACGACGTTTGTATGTATGATTTTACGATCTGCAAAAGCATGGTTTTTCTTAtaattatgtgtatatttgtgtatgtatatctaCAAACAGTGTACTTTTGATCATAGTTCCACCTTCTGTTTAAGGTTATGCTAAAACGACTGGGCTATTTTTGATATGCAGattaactattttctatttgctTGAATGTAACTGACCGTTTTCCAGGTGTAAGGTTCTGCTTCATATTGAACGTATTCCAGTATTAGAATGGTTTTGAAGCTTTTGCAAGacattaaaattgcattgaCTATCTCGCAGTCCTCCTTAGCCCCTTATAGATGCTTTGTCCCATTTTCACAAGTTTCGTATCTCTTGGCCTCAATCTTCACAGATCTAACAAAGTGTGGGAAAATAAAGCCTTTGGAGTTGG

Function

symbol description
mgat2 Predicted to enable alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to act upstream of or within oligosaccharide biosynthetic process. Predicted to be located in Golgi stack and membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIa. Orthologous to human MGAT2 (alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase).

NR:

description
PREDICTED: alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

GO:

id name namespace
GO:0009312 oligosaccharide biosynthetic process biological_process
GO:0005795 Golgi stack cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity molecular_function

KEGG:

id description
K00736 MGAT2; alpha-1,6-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043220601.1 True 2049 mRNA 0.49 1 26563656 26565704

Neighbor

gene id symbol gene type direction distance location
trnas-gcu_31 NA coding upstream 5892 26557683 ~ 26557764 (+)
faua fau,LOC107557010,LOC107567395,LOC107659798,LOC107717644,LOC107704371,LOC105017549 coding upstream 329438 26230786 ~ 26234218 (+)
prpf39 prpf39,LOC107704382,LOC107659803,LOC107713858,LOC107567385 coding upstream 333911 26218579 ~ 26229745 (+)
LOC122324376 clg18h14orf37,cunh14orf37,c25h14orf37,LOC107574488 coding upstream 368694 26185676 ~ 26194962 (+)
entpd5b entpd5b,LOC107756050,LOC107704388 coding upstream 494611 26055121 ~ 26069045 (+)
LOC122324339 LOC107548517,LOC107662059 coding downstream 154794 26720498 ~ 26725162 (+)
LOC122324696 slc25a45,LOC107662097,LOC107702892,LOC107722745 coding downstream 353351 26919055 ~ 26926040 (+)
LOC122325624 NA coding downstream 375282 26940986 ~ 26941120 (+)
her1 LOC107740037,LOC107662100,LOC107556024,LOC107722755,LOC107548498 coding downstream 389081 26954785 ~ 26956511 (+)
mepcea LOC107739998,LOC107662061,LOC107722754,LOC107548516 coding downstream 392588 26958292 ~ 26968451 (+)
G142336 NA non-coding upstream 3353 26557458 ~ 26560303 (+)
G142334 NA non-coding upstream 54111 26504324 ~ 26509545 (+)
G142331 NA non-coding upstream 95804 26467472 ~ 26467852 (+)
G142306 NA non-coding upstream 198014 26329725 ~ 26365642 (+)
G142305 NA non-coding upstream 235388 26322935 ~ 26328268 (+)
G142337 NA non-coding downstream 3450 26569154 ~ 26569761 (+)
G142343 NA non-coding downstream 20924 26586628 ~ 26587286 (+)
LOC122325353 NA non-coding downstream 159830 26725534 ~ 26727024 (+)
G142388 NA non-coding downstream 176600 26742304 ~ 26742663 (+)
G142389 NA non-coding downstream 177970 26743674 ~ 26743983 (+)
G142333 LOC102197881 other upstream 84455 26478551 ~ 26479201 (+)
G142173 NA other upstream 306422 26235421 ~ 26257234 (+)
G142123 LOC107756040,LOC107704367,LOC107712211,LOC107564320,LOC107659815,LOC108257655,LOC108411613 other upstream 524448 25916034 ~ 26039208 (+)
G142416 NA other downstream 337543 26903247 ~ 26905157 (+)
LOC122325079 dlg4,LOC107556052,LOC107662062,LOC106563427,LOC106603100 other downstream 406541 26972245 ~ 27093757 (+)

Expression


Co-expression Network