CI01000001_11246797_11247315 (CORT, SST3)


Basic Information

Item Value
gene id CI01000001_11246797_11247315
gene name CORT, SST3
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11246649 ~ 11247541 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_11246797_11247315.mRNA
GTATATAAGGACCCTGCCACCTAAAGCTCTCAAAGACCAAGATCTCTCCATCTTCACTCTGCACTAGGAGCTACAAGGACTTCGAGGTTCCTGCTTCGCTTCTCTGACTGACCTTTCTGCGCACTTTAACTTCAACTCTTTTGTCAGTATGCAGCTTTTGGCCAGCCTCGTGTCTCTCTTGCTGGTTCTGTATAGTGTCAGAGCAGCAGCCGTGCTTCCAGTGGAGGAGAGGAACCTGGCACAAAGTAGGGAGCTGAGTAAAGAGCGCAAGGAGCTGATCCTGAAGCTGATCTCTGGGCTGTTGGATGGAGTAGACAACAACGTGCTGGCTGGGGAGATAGCACCGGTCCCCTTGGATGTGGAGGAGCCCCTGGAGTCCCGTCTGGAAGAACGGGCCGTCTACAACCGGTTATCACAGCTGCCGCAGCGCGACCGCAAAGCCCCCTGCAAAAACTTCTTCTGGAAGACCTTCACGTCGTGTTAACGGCGCCAGTCCTGCAACGATCCCGCGATCCTCCCTGATACCTGACATGAACTGTGTAGACCTCCGCTGTACATACCATCTCCAGTGTCTGAAGAAAGATCTCTGTGGACTTACTCTGACACAGTCTGTTTGTTAAAGACATTGATGATTATATTTATTTATTTACTTATTGATCGATTAAGCTATTTATGGACCTTTGTTGTTTTTCGGCATTAAAAAAAAAAGA

Function

symbol description
cort Enables G protein-coupled receptor binding activity and neuropeptide hormone activity. Involved in adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway. Predicted to be located in extracellular region. Predicted to be part of FANCM-MHF complex and Fanconi anaemia nuclear complex.

GO:

id name namespace
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05237 SST; somatostatin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_11246797_11247315.mRNA True 710 mRNA 0.49 2 11246649 11247541

Neighbor

gene id symbol gene type direction distance location
CI01000001_11232168_11238289 SRM coding upstream 7994 11232168 ~ 11238655 (+)
CI01000001_11216246_11230227 SMC1A, SMC1A.L, SMC1AB, SMC1AL coding upstream 16328 11216246 ~ 11230321 (+)
CI01000001_11182552_11204143 NADL1.2 coding upstream 42150 11182552 ~ 11204499 (+)
CI01000001_11138617_11139541 NA coding upstream 106976 11138285 ~ 11139673 (+)
CI01000001_11099313_11137500 HUWE1 coding upstream 108371 11099313 ~ 11138278 (+)
CI01000001_11265638_11283027 MASP2 coding downstream 18097 11265638 ~ 11283236 (+)
CI01000001_11359106_11376288 NA coding downstream 111565 11359106 ~ 11376885 (+)
CI01000001_11431153_11431434 NA coding downstream 182335 11429876 ~ 11431587 (+)
CI01000001_11440491_11445508 NA coding downstream 192438 11439979 ~ 11445540 (+)
CI01000001_11656975_11660666 TARDBPL, TARDBP coding downstream 408488 11656029 ~ 11661866 (+)
G19226 NA non-coding upstream 62879 11169293 ~ 11183770 (+)
G19121 NA non-coding upstream 120490 11070904 ~ 11126159 (+)
G19130 NA non-coding upstream 260183 10925528 ~ 10986466 (+)
G19034 NA non-coding upstream 349744 10892437 ~ 10896905 (+)
G19088 NA non-coding upstream 371778 10874670 ~ 10874871 (+)
G19096 NA non-coding downstream 7528 11255069 ~ 11304024 (+)
G19108 NA non-coding downstream 134033 11381574 ~ 11381987 (+)
G19258 NA non-coding downstream 140102 11387643 ~ 11387959 (+)
G19259 NA non-coding downstream 142014 11389555 ~ 11389858 (+)
G19266 NA non-coding downstream 180563 11428104 ~ 11493856 (+)
G19039 NA other upstream 392666 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 706803 10538388 ~ 10539846 (+)
G18937 NA other upstream 770260 10474984 ~ 10476389 (+)
CI01000001_10395420_10396473 NA other upstream 849944 10394851 ~ 10396705 (+)
G18872 NA other upstream 965280 10271146 ~ 10281369 (+)
G19314 NA other downstream 253653 11501194 ~ 11558673 (+)
G19395 NA other downstream 433781 11681322 ~ 11681817 (+)
CI01000001_13514115_13517063 NA other downstream 2265863 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021753 cort coding NC_007134.7 CM002907.2 28731379 ~ 28732313 (+)