LOC122324961


Basic Information

Item Value
gene id LOC122324961
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 20992521 ~ 20995513 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247242.1
TTCACTGCCTGCTCCACTGAACCATTGGGGAAACAGGAAGTTGTGTTGTCTTCGGGAGGATGGACCACATGAATCCGGCGGCCGCTGACACCGAGACACATGAGCGTCTCCGTGCAGGTCTCGCTCAAAGccctgtccatggtgctgaagcACAGCCAGCGCCGCACGACATGGATGTTTTCAACCGCAACAGGATTTCTGCCAAAACTATTATCAGGCCGGTGCAGAGGATCAGATAGTCATACTTCACTTTACCGTCCTCCATCAGCTCCACGTGTTTGGCCTCGCGGTCAATGGCCTTCATCTTACCCTTCACCACGCTGATCCAGGAGCGCAGAGAGAGCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247242.1 True 347 lncRNA 0.56 3 20992521 20995513

Neighbor

gene id symbol gene type direction distance location
cd109 LOC107704024,LOC107669414,LOC107548408,LOC107559083,LOC107719417 coding downstream 27599 20945637 ~ 20964922 (-)
hmbox1b hmbox1b,LOC107704071,LOC107559131,LOC107669440,LOC107745897 coding downstream 234787 20745202 ~ 20757734 (-)
ints9 ints9 coding downstream 274424 20706925 ~ 20718097 (-)
riox1 zgc:162967,LOC107704066,LOC107669424,LOC107719421,LOC107559126,LOC107548410 coding downstream 311700 20674997 ~ 20680821 (-)
cpsf2 cpsf2,LOC107704064,LOC107669458 coding downstream 319401 20661011 ~ 20673120 (-)
nkx2.4b nkx2.4b,LOC107704036,LOC107548417,LOC107669430,LOC107745907,LOC107580186 coding upstream 84291 21079804 ~ 21082714 (-)
LOC122324706 NA coding upstream 158872 21154385 ~ 21168059 (-)
tram2 tram2,LOC107593275,LOC107721446 coding upstream 255235 21250748 ~ 21256606 (-)
xkr5a xkr5,LOC107721445,LOC107593274,LOC107691011,LOC107719374 coding upstream 264020 21259533 ~ 21264967 (-)
prdm1c NA coding upstream 269902 21265415 ~ 21274238 (-)
G140449 NA non-coding downstream 200820 20736588 ~ 20791701 (-)
G140413 NA non-coding downstream 365658 20626655 ~ 20626863 (-)
G140328 NA non-coding downstream 705526 20286480 ~ 20286995 (-)
G140315 NA non-coding downstream 724255 20266668 ~ 20268266 (-)
G140304 NA non-coding downstream 824523 20148280 ~ 20167998 (-)
G140522 cfap61,LOC107745908,LOC107704077 non-coding upstream 853 20996366 ~ 20996681 (-)
LOC122325251 NA non-coding upstream 50312 21045825 ~ 21049976 (-)
G140592 NA non-coding upstream 87781 21083294 ~ 21083559 (-)
G140615 NA non-coding upstream 205124 21200637 ~ 21201961 (-)
G140635 NA non-coding upstream 251477 21246990 ~ 21247465 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other downstream 16766 20968188 ~ 20975755 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other downstream 334141 20634296 ~ 20658380 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other downstream 450272 20410629 ~ 20542249 (-)
G140277 cad,LOC107602171 other downstream 929544 20061602 ~ 20062977 (-)
G140227 cad other downstream 932918 20057624 ~ 20059603 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other upstream 93891 21089404 ~ 21091008 (-)
G140616 NA other upstream 203197 21198710 ~ 21278741 (-)
lin28b lin28b,LOC107721434,LOC107719403,LOC107697090,LOC107550364 other upstream 488079 21483592 ~ 21505655 (-)
LOC122324936 NA other upstream 511731 21507244 ~ 21512483 (-)
batf batf,LOC107697118 other upstream 737031 21732544 ~ 21741077 (-)

Expression


Co-expression Network