LOC122325152


Basic Information

Item Value
gene id LOC122325152
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 10934946 ~ 10937374 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247258.1
GTATAAGGGAGGCCGAGCGCTTGAAAAGGCCGGGAGCATGTGGCCATGCCTGGGCAGAATCCACCAGTCAAGCAGAGAGGACGATACACTTAGCACTCAGCAGAAGAGGAAAGATGGGAACGCAAAGGTGTGGGGAGAGCTTCGATTCGTTGCTAGACTGAGTTGGCTTtaggctgtgttttttttcgGAACTAGAGTAGGCTAGTACGTGATGCTAATTACAACATCTGAGACTGCTTTAAAGTCTTTTCTCGTCCTTTAATTGGCAAGGCAGTTGAGATTAAAAGTCTGCGAATTATTTCAGATAGCCCATTTCATGTCTGGGATAAGCGAGTTGCAATTCGTCAGAACTAAAATTGCTTCTTTGAATGTTTTCAATTACATACTGTAGCGCTGTATACGTTATATATAGCTTCATTTTGATTCAGACGGAGATGCTGGGTGACATCTCTGTTTTACGAGGGGAGCAAATGGAAGATTTTACACCTCTGCCATCGGAAATGGCGCTGTTAAAGGAAGTGGAGAATGAGAACGCTTCGGGTCTGTTTATATGTGAGAAGGTGTTCGAGTGCTAGTCCTCTCCTGCTTGGCTGGCTAACCTCCATGTTCCTTGTCTGTGGACACttgtcaaaacaaaaatgatgatgaaaaaggAAGAGATAACGACATACAgGTAAGCAGCGAGAGTGATTTGCCAAACTCGTGAACATAAGCTCCTGCCGTTCTCTCTGTCTGAAGCAGCACGCCTTGCTGTGGCTGGTCAAATGGAACCAAGTCAGGTGTTTCTGCGAGGTTTGGTCCCCTTCAACCAGCTACTGCGTCGTGAATACAGCCAACATAGAGCACAGATTATAAGACAATCATTCagtctgcttttttaaaatgtactaaccctatttttttcattatggtttttgtttcttctaaaattcaataaagttttttcctttttcatgtTGGATTAATTTTCTCCTTCTTAATTctgatattaattaattattctttCTATATTAATCTTTCGGTCCCCGAGCTCTTCATTCGTTGCCTTTCACTTGTGAAAAGGAAGCTTAATAAGTGCGTAATTGCACTGATTGTTGTATTGATTTTTGAATTGCGTTGAACgtgtacttcaaatcttaaaagtatattttcatgAAACTGTAACTGTGCAGATCCtatgaaatgtatgaaataaaaggccacacacaattatttttatgaaaagttCCATGggtgtaattgtttttatactgtacaaactgtgtTATATCCCtacacctaaccctaccccttacaggaaactttctgctatttcagatttttaatacGCATTATAAGCGTTTTGAAAAGTGGGGACATGGGGTAAAGTCCTGAAAAATCACATTCATACATATGttatacccatgtcattatacacatttgtcctcatttttcattaaaaaaatgcacacacagttTATCTAATtctattttgtattacatttttgtttcagttaatgaTAAACATACTATAAAAATTAAGTTGCTTCATTTACTGACTGTTGAAAGAacaaaatagttttcatttgtACCCTGTTTATGAGAAGTGTTTGAGTTTCAGGTTTAAGTTGTCCATTACCAGC
>XR_006247259.1
AAAGGCCGGGAGCATGTGGCCATGCCTGGGCAGAATCCACCAGTCAAGCAGAGAGGACGATACACTTAGCACTCAGCAGAAGAGGAAAGATGGGAACGCAAAGACGGAGATGCTGGGTGACATCTCTGTTTTACGAGGGGAGCAAATGGAAGATTTTACACCTCTGCCATCGGAAATGGCGCTGTTAAAGGAAGTGGAGAATGAGAACGCTTCGGGTCTGTTTATATGTGAGAAGGTGTTCGAGTGCTAGTCCTCTCCTGCTTGGCTGGCTAACCTCCATGTTCCTTGTCTGTGGACACttgtcaaaacaaaaatgatgatgaaaaaggAAGAGATAACGACATACAgGTAAGCAGCGAGAGTGATTTGCCAAACTCGTGAACATAAGCTCCTGCCGTTCTCTCTGTCTGAAGCAGCACGCCTTGCTGTGGCTGGTCAAATGGAACCAAGTCAGGTGTTTCTGCGAGGTTTGGTCCCCTTCAACCAGCTACTGCGTCGTGAATACAGCCAACATAGAGCACAGATTATAAGACAATCATTCagtctgcttttttaaaatgtactaaccctatttttttcattatggtttttgtttcttctaaaattcaataaagttttttcctttttcatgtTGGATTAATTTTCTCCTTCTTAATTctgatattaattaattattctttCTATATTAATCTTTCGGTCCCCGAGCTCTTCATTCGTTGCCTTTCACTTGTGAAAAGGAAGCTTAATAAGTGCGTAATTGCACTGATTGTTGTATTGATTTTTGAATTGCGTTGAACgtgtacttcaaatcttaaaagtatattttcatgAAACTGTAACTGTGCAGATCCtatgaaatgtatgaaataaaaggccacacacaattatttttatgaaaagttCCATGggtgtaattgtttttatactgtacaaactgtgtTATATCCCtacacctaaccctaccccttacaggaaactttctgctatttcagatttttaatacGCATTATAAGCGTTTTGAAAAGTGGGGACATGGGGTAAAGTCCTGAAAAATCACATTCATACATATGttatacccatgtcattatacacatttgtcctcatttttcattaaaaaaatgcacacacagttTATCTAATtctattttgtattacatttttgtttcagttaatgaTAAACATACTATAAAAATTAAGTTGCTTCATTTACTGACTGTTGAAAGAacaaaatagttttcatttgtACCCTGTTTATGAGAAGTGTTTGAGTTTCAGGTTTAAGTTGTCCATTACCAGC

Function

GO:

id name namespace
GO:0045121 membrane raft cellular_component
GO:0098857 membrane microdomain cellular_component
GO:0005901 caveola cellular_component
GO:0044853 plasma membrane raft cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247258.1 True 1622 lncRNA 0.38 3 10934946 10937374
XR_006247259.1 False 1297 lncRNA 0.38 4 10934946 10937350

Neighbor

gene id symbol gene type direction distance location
trnal-cag_34 NA coding downstream 2302 10932562 ~ 10932644 (-)
eif2b4 eif2b4,LOC107723173,LOC107589057,LOC107697314,LOC107701499,LOC107561932 coding downstream 2631 10925463 ~ 10932315 (-)
snx17 snx17,LOC107723180,LOC107701503,LOC107746210 coding downstream 12064 10895988 ~ 10922882 (-)
si:ch211-278j3.3 LOC107589055,LOC107723221,LOC107746185,LOC107561935,LOC107701501 coding downstream 46719 10871839 ~ 10888227 (-)
si:dkey-71h2.2 si:dkey-71h2.2,LOC107589054,LOC107697321,LOC107723250,LOC107701504,LOC107746162 coding downstream 64211 10839146 ~ 10870735 (-)
si:ch211-142k18.1 si:ch211-142k18.1,LOC107723504,LOC107589090,LOC107697312,LOC107746370,LOC107563691,LOC107701470 coding upstream 124540 11061914 ~ 11067406 (-)
kita LOC107755246,LOC107683958,LOC107601906,LOC107718397 coding upstream 363770 11301144 ~ 11319919 (-)
pdgfra pdgfra-2,pdgfra,LOC107683957,LOC107601905,LOC107718396,LOC107597438,LOC107755213,LOC107665286 coding upstream 402489 11339863 ~ 11360039 (-)
fip1l1a fip1l1a,LOC107601903,LOC107665400,LOC107718393,LOC107597463 coding upstream 546763 11484137 ~ 11506327 (-)
rasl11b rasl11b,LOC107601936,LOC107755225,LOC107718428,LOC107683996,LOC107665415 coding upstream 667256 11604630 ~ 11607753 (-)
G137588 NA non-coding downstream 128166 10806521 ~ 10806780 (-)
G137578 LOC107684790,LOC107723476,LOC107589053 non-coding downstream 148611 10785953 ~ 10786335 (-)
G137573 rp1l1b,LOC107589053,LOC107723476,LOC107684790,LOC107561938,LOC107746156 non-coding downstream 155540 10779130 ~ 10779406 (-)
G137560 NA non-coding downstream 180755 10753957 ~ 10754191 (-)
G137559 NA non-coding downstream 181688 10752847 ~ 10753258 (-)
LOC122325111 NA non-coding upstream 176422 11113796 ~ 11114925 (-)
G137621 LOC107739294,LOC107553647 non-coding upstream 254285 11191659 ~ 11194847 (-)
G137644 NA non-coding upstream 277852 11215226 ~ 11227365 (-)
G137751 NA non-coding upstream 674649 11612023 ~ 11613622 (-)
LOC122324332 NA non-coding upstream 686219 11623593 ~ 11631094 (-)
G137469 tdh,LOC107561940,LOC107723287,LOC107684809,LOC107589050,LOC107701506,LOC107746115 other downstream 210877 10721921 ~ 10724069 (-)
G137451 NA other downstream 364209 10567297 ~ 10570737 (-)
G137330 NA other downstream 996069 9937965 ~ 9938877 (-)
si:dkey-5n18.1 LOC107723560,LOC107687192,LOC107588914 other downstream 1183563 9697662 ~ 9751383 (-)
si:ch73-74h11.1 LOC107687168,LOC107588915 other downstream 1234408 9691124 ~ 9700538 (-)
LOC122324412 nme6,LOC107589089,LOC107697297,LOC107723520 other upstream 194050 11131424 ~ 11136612 (-)
LOC122325476 cdh2,-,cdh4,LOC107561048,LOC107746014,LOC107571545,LOC107701519,LOC107684812,LOC108416271,LOC107656023,LOC107590155,LOC107728629,LOC107739294,LOC107553647 other upstream 204571 11141945 ~ 11182183 (-)
gsx2 gsx2,LOC107601899,LOC107597471,LOC107683998,LOC107755223,LOC107718430 other upstream 429549 11366923 ~ 11368490 (-)
G137773 LOC107755215,LOC107683983,LOC107601925,LOC107718419,LOC107665290,LOC107597464 other upstream 745031 11682405 ~ 11683318 (-)
G137967 mdn1,LOC107601919,LOC107755265,LOC107683937,LOC107597457,LOC107665348,LOC107737285 other upstream 1281389 12218763 ~ 12219639 (-)

Expression


Co-expression Network