LOC122325251


Basic Information

Item Value
gene id LOC122325251
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 21045825 ~ 21049976 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XR_006247273.1
CGGAAAcacaaaatttgtttttaaagtcgGTTTTATTTTACCTGCATACGagaacttatttttaaaagaaaaggcaTCAGACGGCTAAGGCGCCATAGGAACACCGATGCCGGTGAAGAAGTGGAACGCATCTCGGGAAGCACACTTTCCCGATCATTGTGTCAGTTAAAGACAGAGAGTTAGCACATGGCCATGGGAATGTGGTACCTTGCAAAAGAAACGATACACCAGAAGGAATGTCATTGAAAACAGTATACTCTCCAAAAGCTGCAAAGCTGCCTCCATTTCGCTAGCAACGCCCATCTTCCAACGATCCAACGAGGACAATATAAGGTGCCGACCTCGCAGTAAGGTATTGAACAGAAAGTAGGCGCAGTGCATTTCAATGCATCAGTGAAACCAGGATCTTTATCTCTGAGCTTAATTGAAAAGAGTGGGTTTGTAACGTGGCTCTAAAATGCTCTTCGTGCAGGCAGAGCGCTTTAATTGGGCTAAATTGATGAGAATTGAAAGCACTCAGTTAAAAGCAAGACACCACATTGGCAGGCGGCCTGTTGTGCCCAGTAACACAAAAGCACAAGGGCTCTTACCTGCACATTAGCATAGAGATGCCAAGGGTGAGGATCCGCCGTACacgattttaataataaacacattttcccGTTAGCCTCCAGCACAAGAGGGAGTCAAACATTTTCAGAGGCCGTTTGTCATGCATCTATAGACTACTTCAGCTCATTTCAACCGTAACACAGAACTAAAACATCGTTTTAGTCATTATGGCTTCAGCATATTTTGGGAAATGGATAAAAATTGAGTGTATGTTGGTtgtgtaagattttttttgctggAGACTCAAATGATCACCCAGAACTCGCTAATATAACATTGCTGGGTAGCTGTAAcctgttaaaatgtttatggGCTGTTAAAAAGAAGTCTGCCTTGCTTTGTACGATTTTATTTCTAGAGTCTGAAGGCCTAAACTGAGAATTTTTTTCAAGGATCCAGGATCCAGGATACTGTGTCTACTCACGCTAATGAGATTCTGAGTTATGGTTGGGTCAAGCTCTGTCATTTGAAGTGTGAAGAGATGTGGGTCACACACTCAACGGCTGTCATTTcagagtaaatattttaaaggagtTTCTCCTCTTTACATTTATAACCATTATGTCGTTTTACACTATTGAAAGGAATAGATGGCTGTGATCTCGTCCAGCTGAGCTCTAGTGCTGTAATAATGCCTCTGGCCTTCAGTCATCCTGGTGTCTTGTGCCTCTACCTGCTGACCTTCAGCAACAGAGGTCACATCCAGAGCATTCTTACCTCTTCAACTAAAGCTAAAGAGTTGACCTTGTGTGCTTAGCGTTTCTTATTCATTGTTTACCATATTTGGTTTTCTTGGTAAAATACTTTCATACAAACGCCACATGCACCACATACACCACATAGTTCTTCAGTCTATCACACATTGGCGGCTGCCTAGATTTTGGTTTAGAATATTATAGGCTATTATTAAGACCATTTGAGCTTGATGAATGCGGGCGAAAATAATGCTGCTGTGGTTGTGTGCAAaagctaaatgtttttattatcattataatcgGATAACATTACAATAAGTTGCATGTTTCAAATTGatgacatttctgcaaaaaaatgaaaatatgcaaCACTGAAGGTCAAAAATTgagacaatttattatttatgaaacaaGCTTATTTGTTGGCTGATGACGGGCAGCTTTTTTGCTGGTTGCTGGTTTGAACTCAAGTGCCATCACATTGTTTTGCCTTAAATTAATGCAATCATAATATGTTTGAGAAGTATTCTTGAGGGGAAGATAAGTGCATATAAATACTATCAGAGGTGGGCGAATCTGTGCGTTTCATTTCATGGTCATAATTCTCTCTATGGATGATTGCAGATTTGATggacagctgaaaagaacaTGCtcttgcctttaaaaaaaatggacacTGAAGCCACACTTATTAATGTCCAATGTCAAGTGTGTTTATCTGCATGTCTTATGCTGTATGTTCTGTTCTTTTCAGCAACTTGTTTTTGAGGTCTCAAGTTCCTTTGAAGGAATGAAAAAGGAAATGTGCtgaaatgtagatgagtttcttTGAAGAAATGTAACACTGCATCACTCGAAAAAATGAGTCCATCatccataatgtttttttttctcaacctCATTCCATAGCTATGCATTAGGTTCTTCTCTCTTTATTGTCCAAACAATTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_006247273.1 True 2259 lncRNA 0.39 3 21045825 21049976

Neighbor

gene id symbol gene type direction distance location
cd109 LOC107704024,LOC107669414,LOC107548408,LOC107559083,LOC107719417 coding downstream 80903 20945637 ~ 20964922 (-)
hmbox1b hmbox1b,LOC107704071,LOC107559131,LOC107669440,LOC107745897 coding downstream 288091 20745202 ~ 20757734 (-)
ints9 ints9 coding downstream 327728 20706925 ~ 20718097 (-)
riox1 zgc:162967,LOC107704066,LOC107669424,LOC107719421,LOC107559126,LOC107548410 coding downstream 365004 20674997 ~ 20680821 (-)
cpsf2 cpsf2,LOC107704064,LOC107669458 coding downstream 372705 20661011 ~ 20673120 (-)
nkx2.4b nkx2.4b,LOC107704036,LOC107548417,LOC107669430,LOC107745907,LOC107580186 coding upstream 29828 21079804 ~ 21082714 (-)
LOC122324706 NA coding upstream 104409 21154385 ~ 21168059 (-)
tram2 tram2,LOC107593275,LOC107721446 coding upstream 200772 21250748 ~ 21256606 (-)
xkr5a xkr5,LOC107721445,LOC107593274,LOC107691011,LOC107719374 coding upstream 209557 21259533 ~ 21264967 (-)
prdm1c NA coding upstream 215439 21265415 ~ 21274238 (-)
G140522 cfap61,LOC107745908,LOC107704077 non-coding downstream 49144 20996366 ~ 20996681 (-)
LOC122324961 NA non-coding downstream 50312 20992521 ~ 20995513 (-)
G140449 NA non-coding downstream 254124 20736588 ~ 20791701 (-)
G140413 NA non-coding downstream 418962 20626655 ~ 20626863 (-)
G140328 NA non-coding downstream 758830 20286480 ~ 20286995 (-)
G140592 NA non-coding upstream 33318 21083294 ~ 21083559 (-)
G140615 NA non-coding upstream 150661 21200637 ~ 21201961 (-)
G140635 NA non-coding upstream 197014 21246990 ~ 21247465 (-)
G140637 NA non-coding upstream 207414 21257390 ~ 21259521 (-)
G140683 NA non-coding upstream 381830 21431806 ~ 21432094 (-)
crnkl1 crnkl1,LOC107548429,LOC107704074,LOC107669451,LOC107559132,LOC106607683,LOC107745910 other downstream 70070 20968188 ~ 20975755 (-)
pkib pkib,LOC107675049,LOC107598105,LOC107602189 other downstream 387445 20634296 ~ 20658380 (-)
nkain2 nkain2,LOC107598078,LOC107675106,LOC107727617,LOC107602191 other downstream 503576 20410629 ~ 20542249 (-)
G140277 cad,LOC107602171 other downstream 982848 20061602 ~ 20062977 (-)
G140227 cad other downstream 986222 20057624 ~ 20059603 (-)
nkx2.2b LOC107704037,LOC107719379,LOC107559088 other upstream 39428 21089404 ~ 21091008 (-)
G140616 NA other upstream 148734 21198710 ~ 21278741 (-)
lin28b lin28b,LOC107721434,LOC107719403,LOC107697090,LOC107550364 other upstream 433616 21483592 ~ 21505655 (-)
LOC122324936 NA other upstream 457268 21507244 ~ 21512483 (-)
batf batf,LOC107697118 other upstream 682568 21732544 ~ 21741077 (-)

Expression


Co-expression Network