CI01000001_11397805_11428592 (CASZ1)


Basic Information

Item Value
gene id CI01000001_11397805_11428592
gene name CASZ1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11397396 ~ 11428663 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_11397805_11428592.mRNA
AATACGTTTTTTCTTTTTCGTTAACAGCTGAGAGGAGTTTATGCACTGAAAAGACCTCAGGAAAATCCACGATGGCCGCCAAAAGGAAAGGTGGCCTAAAACTGAATGCGATCTGTGCCAAGCTTAGCCGGCAGGTGGTGTACGACGGCAGTTCCCAGAATGCAGAGGGAGACTCAGACCTAGTGGACAACAGCGAGCGGGGCAGCTTGCTCTACGATGAGGGTGACCGGCCTGAAAGCGACTTCCCAGAGGCCCTGACCCTGGGCCAGAGCCTTGAGGAGGACCAGAAACGGCGCGAGGCCATTGAGAAGTGGGTGAACGGCGAGTATGCCGACGATCCACAGTCCTTTGAAGAGGGTGAGCACAGGGGACTCAAACCCAACAATGTAAATGACGATCCCCCTGAAGGCGTGTACATGGTACAGCCCAAAGGCTGCAGCGATGAAGAAGACAACGCAGAAGATGCTGACACCATGCCCGGCTCTCACGAGGGCAGTTATCAAGAGGACAAGGACTCGGTGGGAAGCCCGCACAAGGACGACAGCTACCAGCCCACCAGCGAAGCCCCCCCTCGCCAAGCTTCCTTCTCCTCACCAGTGATAACAAACAAGCAGAATCTGCAGAAACCGACACAATCTCATTTTAAAACCTCTGAACTTTCACCTCTGACTATCTCGGGAAGACTGCAGTACTCAACAAAGTCATTTTGTGTTTATTTCATGGTCATAAAGAAAGCTGTCTGTAAATATGTGTTTGTGTTGTACACCTTTGCTTCCATTGGGTCCCGGCTGCTTCTGCATCTCAAAATGAAGAAAAAGCATTTGAAGACTGCATGGCATGAGGAAGAGAGAGAGAAAGTGCTGGGAGTTCAGCCAGGCAAATCGTATCTTTCCCCCAAAGCCATGGCTTTCCAACCACATGCACATGACATCATTTGGAGCGTCAATGAAAAAGGCAATCAAATAAATGGAGAAAAGGTCTGGTGGAGGGCTGGGGTCCTGGCAGGGTGGAGAGGGAGTTTATCTGACACTTCTGTGAAGTTGTCATCTGGAGCCGTGTTCTTGTACAAGGGAGAGGCCTCCGCACTACGTGATTACGCCGCCAACACCATGAGTGAGTTCTTACACATGTTTGGCTATGATGACCAGAAGGTTCAGGATGAGCTGGCCAAGAAGATCAGCTTTGAGAAGCTGAAAGCAGCTACCTCAGATCCCTCCTCCCTGAGCAGCGAGGAGGCCACCCGTCGAGCTCGCTTCTCCAAGTACGAGGAGTACATCCGTAAGCTGAAGGCCGGGGAGACCCTGCCCTGGCCTATACACCCCAAGCCCGAAGAGCTTAACTCCAAAATGGCACCGGAAAAGAGTGCTGCCCTCATCCAGCCGGCCCTTGCGGGGTCAGAGGGACAGATATTTCCACCCGGAATGGACCACAAACAAAGCTCGCTCAATCCACCCCCAACCAACCCCTCACACATCCAGAACCTGGCATCCCGTGCGTCTAAGTATGATTACTTCATCCAGAAGCTGAAGATGGGCGAGAGTCTCAGACAGCAAAATGGCAATTCCTACAAGCGGCCCTCCAAGTACGACTTAGAGAACGTCAAGTTCTTGCACCTCTTTAAACCTGGAGAGGGCAACCCTGACATGGGCGGCGCCATCGCTTTTAAGACCGGCAAGGTCGGCAGGCCGTCAAAGTACGATATTCGAAACATCCAGAAGTTCATCCCTGGGAAGGTTGATCCGCCGATAATGCCGAGCGTTCTCCCGGCTACAGCAGGGACCCCAGGAACGCCAGTCATCAATACGGCTGCTCCTGCTGGGGTCGTGGGCCCTCCCGGGTTGCCCGTAGACCAGGCGGGCCACCTCGGCTTTAACACTGACTACATGAAGTCCAGCTTCTCCAAAACTGACTCCATCACTACTGGAACCGTCTCTTCTGTCAAGAATGGCCTTCCTCCCGAGAAACCTGCCACAGAGGACGTCAACGTGTACCAGAAATATATCGCCAGGTTTTCAGGGAGTCAGCACTGTGGCCATGTGCACTGCGCTTACCAGTACAGAGAGCATTATCACTGCATGGACCCCGAATGTAACTATCAGAGATTTACCAGTAAGCAGGATGTGATAAGGCATTATAACATGCATAAGAAGAGGGACAACTCTCTGCAGCACGGATTCATGCGTTTCAGCCCTTTGGATGACTGCAGTGTGTACTACCACGGCTGCCATCTCAACGGCAAGAGTACCCACTACCACTGCATGCAGGTCACCTGTTTCTTTGCTCCCCACATTGAGTTCATCGCCAAACTGAGCTATTTTTGTGTCACATCTCGAGTTGTTGTTTTCATGTCCCTGCAGACTACAAGAGCTCAAGCACCAAGCCACTGTTTTCTGAGCATTTTTCATAAAGTGGGCTGCAACAAGGTGTACACGAGCACCTCTGATGTCATGACTCATGAGAACTTCCATAAGAAAAATGCACAGCTGATCAACGATGGCTTCCAGAGGTTCCGCGCCACCGAGGATTGCGGGACGGTCGGGTGCCAGTTCTACGGGCAGAAGACCACCCACTTCCACTGCAGGCGCCCAGGCTGTACCTTCACCTTCAAGAACAAGTGTGACATTGAGAAGCACAAGAGCTATCACATCAAAGATGACGCTTACGCCAAGGATGGCTTCAAGAAATTTTACAAATACGAGGAGTGCAAGTACGAAGGCTGCGTCTACAGCAAGGCCACCAACCATTTCCACTGCATACGCCAAGGCTGCGGCTTCACCTTTACCTCTACCAGCCAGATGACCTCACACAAGCGCAAACACGAGCGCCGCCACATTCGCTCCTCGGGTGTGCTGGGCCTCACTTCCTCCTTCCTGCTGCCCAAAGAGGAGCAGGAAGAGTCCAGCAATGATGACCTCATGGACTACTCCGCCATTAGCAGCAAGAACTCCAGCTTAAGTGCTTCTCCAACGACCCAGCAGTCCTCCACTGTACCGCATCTGCTGTCCACTCCGACCACCACCATGTCCTCCAGCCACAGCGTCAAGCCCACCGCCGCTCTGCCTCCAGCCAGCCGCATTTCCACCCTGCTGTCCCAGGCTCTGCCGAGCAATGTACCCATGGCCCTGGCACTTTCCAACAGTGCACTGGCAGGTGCTTCCAACCCCTTCTTCCCCCTCATTCCCAGAATGCCCATGCCGCTCACACCCTCTGCCGCTGGCCTGATATCCGTCGCCACCTCTGTGGCTCACTCCATGCCCAGCGATTCTCTACCCCAGACCTCTACCCCGACTGGGGACCCAGCTGCTGCTACTGTAGCTTCCACTCCGACGTCATTCGCTGCATCATCCATTATGGAGAAGATGTCGGCCAGCAAGGGTCTGATATCGCCCATGATGGCCCGACTGGCAGCCGCTGCTCTGAAGCCCTCCAGTAACCCGGACGCAGGGATGGGGCAGTCGGCTCAAGCAGGCCGGTTTAATCCGGTCGAGGTGAAGCAGGAGCCGGTGGACAGCGCCCCCGCGGCCTCCCAAGACTCTGTCCAGGAGCACAGCCTGGACCTGAGCAAGAAAGACCACAGCGCTGAATCAAACGGACACCCTGCGCCGGGAAATACATCTCTTTTATCCTCACTTATGAATAAGATGAATCCTGGTTTCTTCAGTGCTTTGGATCTGAAGTCAGAGCTGGAGGGAGCTCAGTCGGCAGACGGCTCAGACGCAGCTCAGTATCTCAGTAGGGTAATGAAGAGGTCGGGCCCAGAGAAACACACTGAGCTGTGGAGGACCTACCTGCACAGGTATGACACTGATGATTTCTGTGAAGCCCATTGTGATTTCTTGCACAAGATCCATTTTCATTGCCTGGTGGAGGATTGTGGGGCGCTTTTCAGCACAGTGGACGGAGCCATCAAACACGCCAACTTCCACTTAAGAGCCAACCTGAAGGTTAAATCGGAGCCCCCTTTCAACGAGAGCAAGGAATCCAACGATAGCACCCCTAATCAGATGGCTGCCCCCATTTCCATGGCCAAGACGCCTCCCATGGAGGTGCCCAGCCTGGCTGTGTCAGGGGGCTACAGCTCATCCCCCTCTCTCCACTCCTGGAAGCAGCTGGCCGGATCGATCCCCCAGCTTCCCGCCTCCATGCCCAGTATGCCAGCCACTTCCCCTCTGGCCACCACATCGCTGGAGAACGCCAAGCCTCAGGTCAAGCCTGGCTTCCTGCAGTTTCAGGACAATGATCCTTGCCTGGCCACCGACTGCAAATACTCGAATAAGTTCCACTTCCACTGTCTGTTTGGAAATTGCAAATATGTGTGTAAGACATCCGGGAAGGCTGAATCACATTGCCTGGACCACATTAACCCCAACAACAACCTGGTGAATGTGCGAGACCAGTTTTCCTACTATTCTCTGCAGTGTCTTTGTCCTAACCAGAGTAGAGTGGGTTCTGTTTATGTGCTCCTGGGGGAACTGCCTCTCTGGAAACAGATGGTGGTGCAGAAACAGCACTGTGAGTTTCGCATGAGGGGCCATTATCATTGTCTGAGACCTGGCTGTTTCTTTGTCACTAACATCACCACCAAACTGCCCTGGCACGTCAAGAAGCATGAGAAAGCAGAAAGACGTGCCGCTAACGGGTTCAAATACTTCACCAAAAGAGAAGAATGTGGCAGACTCGGATGCAAATACAACCAAGTTAACAGCCACTTCCATTGTATCCGTGAGGGCTGTCAGTTCTCCTTCCTGCTCAAGCACCAGATGACCTCCCATGCCCGCAAACACATGAGGAGGATGCTGGGTAAAAATTTCGACAGAGTTCCTTCCCAGGCGGTCTCTCACGCCCACCGACCTGAAGAGATGCAGCACATGGCCAGTCTAGCTTCGTCTGCCATGGTAGGCAGCCATTCTAATCTTACCCACAACTTCTCCAACATGATGGAGGAAAATGATGACTACATGGACTACACCGGCGGAGGAAGCCCGCTGGGACTCTCCTCAGAGTCCTCCAATCAAGACCGCAGTTGCACCAGCACCCCCGTGGGCAATGATAGTTCGCCAGCAGGTAACACCATCTCTATCCCAACGGCAACTGGTGCCAAGAAACGCTTCTGGATCATCGAGGACATGTCACCCTTCGGCAAGCGGCGCAAGACCGCTTCGTCTCGCAAGATGCTGGATGAAGGCATGATGCTGGAAGGCTTCCGCCGCTACGACCTCTATGAGGACTGCAAGGATACGGCTTGTCAGTTCTCCCTGAAGGTCACGCACTATCACTGCACACGGGAGAACTGCGGCTACAAGTTCTGCGGCCGCACCCACATGTACAAGCACGCCCAGCACCACGACCGCGTGGACAACCTGGTCCTGGATGACTTCAAGCGCTTCAAGTCTTCGCTATGCTGTAACTTCCCCGATTGCCAGTTCTCCGGCAACAGCACCCACTTCCATTGCCTGCGCTGCGGCTTCCGCTGTACGGACAGCACCAAGGTGACGGCGCACCGCAAGCACCACGGCAAGCAGGATGTGATCAGCGCCGCCGGATTCTGTCAATTCAGCTCAAGCGCAGACTGCGAGGTGGCCGACTGCAAGTACAAGCTCAAGTGTTCGCACTTCCACTGCACCTACCCAGAGTGCAAGCACACGGTGGTGGGCATGTCCCAGATGGATTCCCACAAGCGCAAGCATGAGAAGCAAGAAAGAGGCGAGCTGCCTTCGCGACTCCATGGACCTGAGCAAAAGGTCCGGGATGCACCGGGAGCCACTCTCCCTGGCCACCAGTTCTGGCCCTGCTGCCTCAATGGGCCTGGGCAACCCTCAGGACGACACTACCGGCACATCCGGCGATCCTGAAGACGACCTGTCACCCGAGGAAGAGCCGTTAGCCGAGGATGATGATGACGACGATGATGACGACGAAGAGGAGGAAGTAGAGGAGGACATGAATACAGACTCGTATGAAGATTCCATGCCAGAGCCAGAAGTAGACAAAGACAATGGAGAGAGTTTTGATGCTTCCATGAACCACGCAGAGACTTCCCAACTGGATAAAGAGGAGCCGGAGGCTGAGCCCTAATCTATGCTGTAGAAGGAGAACTATGAATTCCCTGAACAAACGCAAGTTTGAGTGGCCTCATTTATCATGCTTAGAGACGCTGCAGATGACAAGAAAACAACCAACTACAAGAGAAGTGAAGGCCCAAAATGATTTATTATGATGTTTACAAGATGACCAACATTATTAATTTAATTATGCATTAAA

Function

symbol description
casz1 Predicted to enable metal ion binding activity. Predicted to be involved in regulation of neuron differentiation and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including adaxial cell; cardiovascular system; hindbrain neural plate; musculature system; and nervous system. Orthologous to human CASZ1 (castor zinc finger 1).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_11397805_11428592.mRNA True 6261 mRNA 0.54 24 11397396 11428663

Neighbor

gene id symbol gene type direction distance location
CI01000001_11385404_11386042 NA coding downstream 8462 11383448 ~ 11388934 (-)
CI01000001_11288035_11293399 NA coding downstream 103313 11288028 ~ 11294083 (-)
CI01000001_11210296_11213607 NA coding downstream 183789 11210224 ~ 11213607 (-)
CI01000001_11089521_11092848 NA coding downstream 303765 11089420 ~ 11093631 (-)
CI01000001_11034064_11048961 C1QL4.L, C1QL4, C1QL4A, C1QL4B coding downstream 348435 11033863 ~ 11048961 (-)
CI01000001_11446246_11449035 NA coding upstream 17223 11445886 ~ 11449066 (-)
CI01000001_11472071_11477723 NA coding upstream 43307 11471970 ~ 11477774 (-)
CI01000001_11649219_11650300 NA coding upstream 220399 11649062 ~ 11650300 (-)
CI01000001_11654628_11655345 NA coding upstream 225904 11654567 ~ 11655367 (-)
CI01000001_11665402_11666409 NA coding upstream 236456 11665119 ~ 11666949 (-)
G20286 NA non-coding downstream 93503 10875115 ~ 11303893 (-)
G20375 NA non-coding downstream 104725 11193944 ~ 11292671 (-)
G20276 NA non-coding downstream 114045 11267587 ~ 11283351 (-)
G20385 NA non-coding downstream 170887 11223648 ~ 11226509 (-)
G20494 NA non-coding upstream 234912 11663575 ~ 11663824 (-)
G20496 NA non-coding upstream 252597 11681260 ~ 11681753 (-)
G20501 NA non-coding upstream 404945 11833608 ~ 11833881 (-)
G20588 NA non-coding upstream 459849 11888512 ~ 11889125 (-)
CI01000001_11906787_11948732 PIK3CD non-coding upstream 461642 11906774 ~ 11949296 (-)
G20315 NA other downstream 276566 11116755 ~ 11120830 (-)
G20319 NA other downstream 282649 11110837 ~ 11114747 (-)
G20230 NA other downstream 368619 11022127 ~ 11028777 (-)
CI01000001_10862471_10864514 NA other downstream 532476 10862225 ~ 10865770 (-)
G20136 NA other downstream 857546 10539027 ~ 10539850 (-)
CI01000001_12878462_12899012 NA other upstream 1444735 12878365 ~ 12899469 (-)
CI01000001_12921289_12924608 NA other upstream 1491936 12920599 ~ 12925496 (-)
G20555 NA other upstream 1913326 13341989 ~ 13348146 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022431 casz1 coding NC_007134.7 CM002907.2 28954137 ~ 29004753 (-)
bowfin (Amia calva) AMCG00002263 NA coding CM030136.1 CM030136.1 9309416 ~ 9356970 (-)