CI01000001_11656975_11660666 (TARDBPL, TARDBP)


Basic Information

Item Value
gene id CI01000001_11656975_11660666
gene name TARDBPL, TARDBP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11656029 ~ 11661866 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_11656975_11660666.mRNA
CTATAAAATTGCATATTTGTCAGTATCATTGTGGGCAGCATATCATATATCTGGTCCTGTCATTCTTAGCAATTGCAGAACTATAAAGAAACAATTGGGACACCCATAAGAAGGCTGACCAAACCATCACAGATCCCCAAAGTGAAATATTGTGTGATGAAGCCTTTCAGCGCCTCAGTTGCACACTGCACTGCTAATATTATTTGTCTTTAAATCTATTGTTTCACAGTGCTTTTGTCTGTTCTAGGTCTGATGTAACAAACCTGTAAGATAAGAGGAGAAGCTTTCAATATTACAGTGGATTCTTGCATATTTGACATTATTTCAGTCTCTTTAAATGGAAATTACAACCCCACCGGCCCTTCATAATCATGAACAGACAAGACAGAATCACACCATCTGATACAGTATACCACAAATTATGTTATGCGTTAAAAAAGTTAACATATTACATTTGCAAACCCCTCCATGTGCTGCGATGAGACGCTCCAAACTTATGATGTCATTCCTTCAGTGACGCGTCTGGGTGGCCATTTTATCAGTTTAGGGGGTCGGAAACAGAAACTGGATGCATTGGTCCACTCGTTTTCTTTATTTTTTATTAATTTAAATCGCTTGTTTTAATCACAAGCGGTAGATAATTGTGTACAGTCGATGAGTAGGTATTTGCAAAGCGTGGCAGTTGGCGGGAACAGGGTGCGGCGCGCCATTTATTTCTATCGTGCGCGCGGTTAGCAAATAGCTTAGCTTAGCTAATGGCACCCCGCATTCATTGACAACAGTCGCACGCAAACAATAGATAAAACACTTGTTGCCATCAAATTTGTGGTTGTGTTTACTTTTGAAGTCTTTCCGGTTTACTACTTTCAGTTTCAGCTCGGTTGGTTGTCTTGTAACTGAATTGTTTATCTGCTCGGAAGCTGTTAGCACAGTTCTCGGTGTTATCATGACGGAGTGTTATATTCGCGTAGCGGAGGATGAGAACGAGGAGCCGATGGAGATCCCGTCCGAAGAGGACGGCACCGTGCTGCTGTCCACCGTCGCCGCGCAGTTTCCCGGTGCTTGCGGCCTTAGATACCGTAGCCCCGTGTCTCAGTGCATGAGAGGGGTCCGACTAGTGGAAGGGGTTCTTCATGCACCTGAATCAGACTGGGGCAATCTGGTGTACGTGGTTAATTATCCAAAAGATAACAAGAGGAAGATGGATGAAATGGATGCTGCATCGGCTGTGAAGATCAAGAGAGGTGTGCAGAAGACATCAGATTTGATTGTGCTTGGGTTGCCATGGAAAACAACAGAGCAAGACCTTAAAGATTACTTCAGCACTTTTGGAGAGGTGATCATGGTGCAGGTGAAGAGAGATGCAAAAACTGGAAATTCCAAAGGATTTGGCTTTGTAAGATTTACAGACTATGAAACACAAATAAAAGTCATGTCCCAACGGCATATGATCGATGGAAGATGGTGTGACTGTAAACTCCCCAACTCAAAGGCTGGTCCCGATGAGCCTATGAGAAGCAGGAAAGTGTTTGTGGGCCGTTGCACCGAGGACATGACAGCCGATGAGCTTAGACAGTTTTTTATGCAGTACGGCGAAGTCACAGACGTGTTCATCCCCAAACCTTTCCGAGCTTTTGCCTTTGTCACCTTTGCAGATGATCAGGTTGCCCAGTCTCTGTGTGGTGAGGACCTGATCATCAAAGGAACCAGCGTGCACATCTCCAACGCTGAGCCTAAGCACAATAATAGTAGGCAAATGATGGATCGTGGGCGATTCGGGGGGTTTGGGGGGCAGGGCTTTGGCAGTAGTCGCAGTCCAAACAGCAATGTGAATTTTGGGGCTCTTAGCCTGAATCCAGCCATGATGGCAGCTGCTCAGGCAGCCCTCCAGAGTAGCTGGGGCATGATGGGAATGCTGGCCAGTCAGCAGAATCAGACAGCCGCCTCTGGCACTACCCCTAGCGGGCAGAACAGTGGTAATAGAGATCAGAACCAGAGTTACAACCCAAGCAGCAATAACTACAACACCGGCAGCTCAGCTAGTCTCGGGTGGGGGGCAGGTACTAATTCAGGCTCGAGCAGTGGGTTCAATTCTGGCTTTGGGTCTAGCATGGAGACAAAGTCCAGCTGGGGAATGTAGAGAGATTTGAACTGGGTCATGAAGTATCCTAATATCTAGGTTATATGGTAAGTATTTTGAGAGAAGAAAGTTTAGTCCGATATTATGTCCCTTAAATATTTGCCTTTGATTTTGTAAAACTGAATGTTCTTCGTATACATATAATGATTGCTCTTTAAGATTCATTTAGTGGTTGGAATTGTTAGGAGTGAAATGAACACTATAAGAATTTTTTTTTTTATTTTTTTTTTTCCCTTATGGATAAAATTTATTTTGTGTCAGGCATTATTTCAGTAAGCCCACATATCTGAGCATCCAGTACATTTAAAGATGCTCCATGTGGAAAGCAATTTGAGTTGTTCTCTGCAGTTTTTTTTCCCTCAACGTTTTTTATGGTCAAGCCTTCATAAATCTCTTCTACAGTTCATCACCTCTTTTCCAATTTCCCGGGAAGAAGCCCCTCGTTGGCCGCAATGTTCGAGCGATCTCAGTATCAGTTCCCTTCTTCCCATGTGTAAATGCTTTGCCATCAAAGAGCACAGCTTCACTCTGCATATACTGTGTTAGACGGTGGGTGTTGTCTTTTTTTTCCCCTTTTCATGGATGAAATCTGTCCGCTTTTTTGAGAGCTGAGAGTGATATGGTGATGGATTGTTGGTGCGCCACGAGTGAGAGACTGAATGAGCGAACGCACTGAGAGAGAGAGAGAACTTGAACGCAAGTGTGCGATGCCGAAAAGCGACGTGATGACTGTGAGAAGAACCTGTGTGAGCGAGTGTGAACAGAGGCAGCGAGTGTTTTTTCTGTAGGACCATCAGAAGGACATTCATTTACATTCTTCCGTCCCTCTTGTTCTGTCTACCTTCCTCCCTTTTCTGATATTGCAATCATATTTAAAGAGCTGCATTTAAAAAAAAAAAAAAAAAGATATATGTAGTGGAATGTTTAAGTGATCTACTAAATATTTGTGTTCTTGCTTAATTTGATGTGAATGCTGTGTATGGTGTGTGTTCTATCTCGCTGTTACTGAACTCATATGTGTGAACGTGATGTGATGCTGTCTGTGGGCGGGGCTCTGGGAGTGGGCGGTGAATGAGGGCGAGCGTGAGCTCTGAGTGGCTTAACTGGGGTGATGTATTGATGATGAAAGTGAAGAAGAGGTTGCTTTTGTTAAGTGTTTTGAATGCTTTTTATATGTTTTGTGAATCTAAGGGAACTCGA

Function

symbol description
tardbp Enables double-stranded DNA binding activity; identical protein binding activity; and mRNA 3'-UTR binding activity. Involved in several processes, including negative regulation by host of viral transcription; nuclear inner membrane organization; and regulation of mRNA stability. Located in nucleoplasm. Implicated in Parkinson's disease; amyotrophic lateral sclerosis; amyotrophic lateral sclerosis type 10; and motor neuron disease. Biomarker of Lewy body dementia; neurodegenerative disease (multiple); and progressive supranuclear palsy.

GO:

id name namespace
GO:0007626 locomotory behavior biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_11656975_11660666.mRNA True 3340 mRNA 0.44 5 11656029 11661866

Neighbor

gene id symbol gene type direction distance location
CI01000001_11440491_11445508 NA coding upstream 210489 11439979 ~ 11445540 (+)
CI01000001_11431153_11431434 NA coding upstream 224442 11429876 ~ 11431587 (+)
CI01000001_11359106_11376288 NA coding upstream 279144 11359106 ~ 11376885 (+)
CI01000001_11265638_11283027 MASP2 coding upstream 372793 11265638 ~ 11283236 (+)
CI01000001_11246797_11247315 CORT, SST3 coding upstream 408488 11246649 ~ 11247541 (+)
CI01000001_11756218_11760009 NA coding downstream 94295 11756161 ~ 11761497 (+)
CI01000001_11809724_11812692 LZIC coding downstream 147561 11809427 ~ 11813444 (+)
CI01000001_11898621_11898914 NA coding downstream 236431 11898297 ~ 11900188 (+)
CI01000001_11990189_11991073 AURKAIP1 coding downstream 326211 11988077 ~ 11991195 (+)
CI01000001_11994138_12003906 NA coding downstream 332272 11994138 ~ 12004100 (+)
G19312 NA non-coding upstream 155515 11500217 ~ 11500514 (+)
G19266 NA non-coding upstream 162173 11428104 ~ 11493856 (+)
G19259 NA non-coding upstream 266171 11389555 ~ 11389858 (+)
G19258 NA non-coding upstream 268070 11387643 ~ 11387959 (+)
G19108 NA non-coding upstream 274042 11381574 ~ 11381987 (+)
G19349 NA non-coding downstream 7098 11668964 ~ 11670995 (+)
G19394 NA non-coding downstream 18841 11680707 ~ 11680946 (+)
G19351 NA non-coding downstream 20691 11682557 ~ 11687675 (+)
G19362 NA non-coding downstream 28059 11689925 ~ 11690609 (+)
G19411 NA non-coding downstream 94731 11756597 ~ 11758207 (+)
G19314 NA other upstream 97356 11501194 ~ 11558673 (+)
G19039 NA other upstream 802046 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 1116183 10538388 ~ 10539846 (+)
G18937 NA other upstream 1179640 10474984 ~ 10476389 (+)
CI01000001_10395420_10396473 NA other upstream 1259324 10394851 ~ 10396705 (+)
G19395 NA other downstream 19456 11681322 ~ 11681817 (+)
CI01000001_13514115_13517063 NA other downstream 1851538 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002264 tardbp,LOC107586522,LOC107716231,LOC107695779,LOC107570713,LOC107681961 coding CM030136.1 CM030136.1 9619457 ~ 9624694 (+)