CI01000001_11756218_11760009


Basic Information

Item Value
gene id CI01000001_11756218_11760009
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11756161 ~ 11761497 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_11756218_11760009.mRNA
TTATAAAAATACCCCAAACTGCATGAAAAACACACAAAAATATATCATTGTGAAACCATGCAGCACTCAGAACAAGGAAACGGAGAGCTACAGATGGTGAGTGATAAAGGAGACCAATGTAATAAGACATCGGCCAGCAACTTGACGGCTGTGTGCAAAGCTTTTACAGACAACTCCCGTGTCTGCGCTGGCGGTCCCCAAGGGTCTGCTGTCAGGATGACTCCATCCTTCTCATTAGCAGAGCTGAAACAGTCTAAAATAAGAGGAAAAGGTCACAATAACATTAGATTCAGTGCATTGTGGATGAGGCAAGAGGCAAAGACTCTGCAAGATCTCACTCTCAAGAGAGATGTGACCTTGTACGCCCTACGGACCCCTTTGTTTAACATGGGGTTAAGGCCTGCTATCGGTCAATAATGACTCTGTAAATGAAGAAAGAGTTTGGTATGACAAAAATGTCTCTCACACAGTCCAATGCATCTTCCTTCATGAGATTTGAAGCTTCATGAAGTTAAAGAGGACCTATTATGCAAAATTCACTTTTGCATGGTGTTCGGACAAAAATGAGTGTTGGCAGTGTGTGTACACAACCACCCTATAATGATAAAAATCCAACCACTCCTTTTATTTTTAATCCCCATAAATCATAAGCAGTGTCTCAGAACAAGCCATTTCCAGATCCCTGGGAGTGTGACGTCACAAAAGCCACAGGCCCCGCCCACAAATGTTGACAGACACTGCCGTTTTAACATAGAACTGCCCTAAGCGCGTTTACAGCAAGTTTACACAGTCCGCCATTGCTGCACTGACGAGAACGTCTCCCAAGCATTTTAGGTGTTCTGTAGCTGGATGGATTAATCCACATAGCTCTCTCCATTTACTCCCTAAATCTGAGCCGCTGAAGACGAGGTGGATTCATTTTGTTTTTGAAGAAAATACTCCCTCAACTCTACCGAAATTTATGTCTGCGCAAATCATTTCACACTGGACTGCTTTGTGAACAAATGTCAATACAAAGGGACAATACAGAACATACAGTCTCCAGAGTGATACTGGATACGGCAGTGATGAAGGTGAGAGCACTTTATTCCAGTTCATCGGAGTTGATTTATGGATATAAAGTTTACCAGTTTATTAAGCACCACCCAAAAAGGCATAATGTCTTTATATATTTGTTTACTGTTAGTTGTAACAAGTGTTTGTGTACTTCTATGTATGTTGATGATAATGCAAGGGAGAGAGAGAGAGTTTATGGATAATATTTTATTGCACACTTGCACTGTGTTTTATTAAGCTCTTACAGTGATTTTCTAGAGTGAAGATGCTTCATATTTTGTGTGAAGTACAATAAACGTTATAAATCTCATCTGTAAACTCGCTTGTAGTAATACAGTGGATAAAAACAAGAAGACAATATAAGTTATAACCGTAATTGAACTAAACTATACCTGTTCTATCTCCATGCAGCATATATTCGCAGTTTCCGACATTATAGCGCATCCTGACTGAATCCTGACAGGAGAACGAGCTCTTGAAGCTCCGCCCTCTTAGGCTGAGTGCAGCAGCTCATTTGCATTTAAAGGGCACACACTGAAACGGCGCGTTTTTGCGCAACCCCAAAAAGTGGCAATTTTAACATGCTCTAAAAAATGATCTATAGGGTATTTTGAGCTAAAATTTCACATACACACTCTGGGGACATCAAAGACTTATTTTACATCTTGTAAGTGGGGGCATAATAGGTCCCCTTTAAAACAAGGGCTGGGTAAAATTATTATTTGATTTTCCAAATAATCACAATCTTATTTTGAACCATTTTAATTGAGTCTTCAAAACCCAAGAGCCAGTGTTTACAGCAGCTTGGAAACCAAATGACTCTTATGAACCAGTTCATTTTAATGAATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_11756218_11760009.mRNA True 1905 mRNA 0.40 4 11756161 11761497

Neighbor

gene id symbol gene type direction distance location
CI01000001_11656975_11660666 TARDBPL, TARDBP coding upstream 94295 11656029 ~ 11661866 (+)
CI01000001_11440491_11445508 NA coding upstream 310621 11439979 ~ 11445540 (+)
CI01000001_11431153_11431434 NA coding upstream 324574 11429876 ~ 11431587 (+)
CI01000001_11359106_11376288 NA coding upstream 379276 11359106 ~ 11376885 (+)
CI01000001_11265638_11283027 MASP2 coding upstream 472925 11265638 ~ 11283236 (+)
CI01000001_11809724_11812692 LZIC coding downstream 47930 11809427 ~ 11813444 (+)
CI01000001_11898621_11898914 NA coding downstream 136800 11898297 ~ 11900188 (+)
CI01000001_11990189_11991073 AURKAIP1 coding downstream 226580 11988077 ~ 11991195 (+)
CI01000001_11994138_12003906 NA coding downstream 232641 11994138 ~ 12004100 (+)
CI01000001_12006266_12048809 DVL1A, DVL1B, DVL1 coding downstream 244431 12005928 ~ 12049045 (+)
G19362 NA non-coding upstream 65552 11689925 ~ 11690609 (+)
G19351 NA non-coding upstream 68486 11682557 ~ 11687675 (+)
G19394 NA non-coding upstream 75215 11680707 ~ 11680946 (+)
G19349 NA non-coding upstream 85166 11668964 ~ 11670995 (+)
G19312 NA non-coding upstream 255647 11500217 ~ 11500514 (+)
G19358 NA non-coding downstream 33307 11794804 ~ 11797310 (+)
G19353 NA non-coding downstream 53017 11814514 ~ 11814714 (+)
G19435 NA non-coding downstream 69035 11830532 ~ 11831123 (+)
G19438 NA non-coding downstream 90857 11852354 ~ 11876252 (+)
G19488 NA non-coding downstream 125451 11886948 ~ 11887201 (+)
G19395 NA other upstream 74344 11681322 ~ 11681817 (+)
G19314 NA other upstream 197488 11501194 ~ 11558673 (+)
G19039 NA other upstream 902178 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 1216315 10538388 ~ 10539846 (+)
G18937 NA other upstream 1279772 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 1751907 13514115 ~ 13517063 (+)

Expression


Co-expression Network