XLOC_006783 (mycla)


Basic Information

Item Value
gene id XLOC_006783
gene name mycla
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 35904335 ~ 35908275 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013056
GCCTCCGGTGGGCGTGGCCACGCGGTGCTCTCGCACACAAAGACGCAGATCTGGCGCGAAAGCACTTTTACCGGCAGCGGGCTGGGGGAGGGTGCGGCTCCACTGCACCACGCGGATCGATCGTTGCTGCCGTTGTAACAGGACACCCGCTTTATATCCGCGAGGAAGAAAAGGAAAACTTTTCTTGTTGTTCAGGTTAAACGGCTGTGAAACAGACTGCTGGAGTAGCGCGCGCTATTGTTTCGCGAGAGCGCGTGTACCGGAGTTCTACCGGACGCTGCGCTTCTTTGTTCTGTTCTGCGCGTCCCGTAGACTCTCCCTGGACTTTGCAGGTCTGCGACCCCATGATATTCGTGTAGTAGTACATGGTCTGAAGCGATGCCTGGAGTCAACACCCAAACACTGTACGGCTGGGACATGGAGCACTACTTTTACGACGAGATGGACACCGAGGAGGACTTCTTTAAGTCTACGGCGCCGAGTGAGGATATATGGAAGAAATTCGAGCTGCTTCCCACCCCGCCCATGTCGCCCTCAAGGACGCTGGATGGGGACTGGTTATTCCCGATACCCGGGGACCGGCTTGGGTGGGCGCCGCCGAAGGTGTTAACGTGTGATGAGGAGTATGAGGGGCTTCACAAGTTCGACCCACTGGACATTTTTGGGAATCTGGGTTCAATTGTTATCAAAGACTGCATGTGGAGTGGACTTTCCACGAGTCACCGGCTGGAGAAGGTTGCGCATGGAGAGCGAGCACCGGTGGCCGCTCTGATCCAGAACTCGACCGCACAGAAAGCTGCCCGTGCCGCATCGGGCACGCCCGTGACAGGGAGCCAGGCGGCACAGTGCGTAAGCCCCGCCGCAGTCCTGGAGCTCCCCGTCCCGCATAAGAAAGTGGCTGCTGGCTCCTCCGGTTCAGAGTGTCGCTCAGATTCATCCGATgacgatgaggatgatgatgagatTGATGTTGTGACTGTGGACAACCGGCCCAAACGTGGCCGTCCTCCGAGTCGCCGGACGCCGGTTACCATTACAGTCAGTGCTGATCCATTTGGACCATGTCCCAAACGCTTCCACGTTTCTCTACATCGGCAACAACACAACTATGCCGCTCCTTCCCCTGACACGGACCCTGAGGATGACTTCGAGATTGAGCCTGTAAGCAAACGACCGCGTCTGGAGTCTTCATCTGCTCCCTCGTCTCCACTTTCCTCACCCGCCACTTCAGACTCTGAGGACTCCACTGAGCAGCGGCGCAACTTCTTGGAGAGAAAGCGGAGAGATGACCTTCGCTCCAGGTTTCAGGCGCTCCGTGAGGAGATTCCTGGTCTGTCCGGATCATCAAAGACCTCGAAGGTGGCGATTTTGACGCAGGCAACTGATTACTTACTTCAGTTGCACTCATCTCAGCGGCGCCAAGCTCAGGAGAAGAGAAAACTCAAAGCCAAACAGCAGCAGCTTCTCCGCAGGATCAGTGCGCTGCAGAACTCTTGAAAAACATCCAGTTTAACTTGGCTAATCTTATATTTCCAAAGCTCATTACATGGACAAGGAAACTTGTTTGTCATTCGCAGAAATGACACTTGAAACACTGCAGGGAGATCTTTAAAAAATCGCATTCATTTCTGGCCTTCTTGTGaggatctgtgtgtttgtgtgcgcgcgcgtgttaTTCTGTAGACTTGAAAACATGAATTTTTGTATGAGATGAtgacaaatgtgcacatgcaatGCCTTTATAAACCTCAGTGGACAGCGGCGATACAGAGGAAGCTGTAATATTGACAAATTTACCTCCATAGAAAGAAGGGTGGGTGGTGTTTGTATGCATGTTGGGTGTGTAGGGGTGCGTGAGGGGAGCATGGTGTTTGAACACATGTAAAAAGTCTGAAGTGTCTTGTTCATAATTTGATCTGTACAAAATGTGATGTAAATACTGTATTCAGAGGACTTCATCCTCCTGTATCTACTCGACTGCACAGAGATTCTATTTTGGTAAAGAATAAAGCATCTAAAATG
>TCONS_00013057
GTTGGAGTAACGCATTCACATCACATGCGACCGTTTCTCTGTCGTTCAGTCAGCAGGGGTTAACTGCTGTTAGTGTTGATAAACTATTTTGCCTAGATAGACCAATCTCAACCGTTATGCATGTGCACTACAGATATGTGCATTTAATGCAGATATTCGTGTAGTAGTACATGGTCTGAAGCGATGCCTGGAGTCAACACCCAAACACTGTACGGCTGGGACATGGAGCACTACTTTTACGACGAGATGGACACCGAGGAGGACTTCTTTAAGTCTACGGCGCCGAGTGAGGATATATGGAAGAAATTCGAGCTGCTTCCCACCCCGCCCATGTCGCCCTCAAGGACGCTGGATGGGGACTGGTTATTCCCGATACCCGGGGACCGGCTTGGGTGGGCGCCGCCGAAGGTGTTAACGTGTGATGAGGAGTATGAGGGGCTTCACAAGTTCGACCCACTGGACATTTTTGGGAATCTGGGTTCAATTGTTATCAAAGACTGCATGTGGAGTGGACTTTCCACGAGTCACCGGCTGGAGAAGGTTGCGCATGGAGAGCGAGCACCGGTGGCCGCTCTGATCCAGAACTCGACCGCACAG

Function

symbol description
mycla Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including axial mesoderm; nervous system; pectoral fin bud; presumptive neural retina; and shield. Orthologous to human MYCL (MYCL proto-oncogene, bHLH transcription factor).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2439 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in several structures, including axial mesoderm; nervous system; pectoral fin bud; presumptive neural retina; and shield. Orthologous to human MYCL (MYCL proto-oncogene, bHLH transcription factor).

Ensembl:

ensembl_id ENSDARG00000006003

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013056 False 2022 mRNA 0.52 3 35904335 35908275
TCONS_00013057 True 597 mRNA 0.52 2 35906948 35907768

Neighbor

gene id symbol gene type direction distance location
XLOC_006782 tacc3 coding downstream 12030 35880573 ~ 35892305 (-)
XLOC_006781 map3k4 coding downstream 59374 35787873 ~ 35844961 (-)
XLOC_006780 erlec1 coding downstream 139307 35750690 ~ 35765028 (-)
XLOC_006779 BX663524.1 coding downstream 311958 35592242 ~ 35592377 (-)
XLOC_006778 memo1 coding downstream 376638 35510893 ~ 35527697 (-)
XLOC_006784 NA coding upstream 16767 35925042 ~ 35925484 (-)
XLOC_006785 BX510990.1 coding upstream 54075 35962350 ~ 35962466 (-)
XLOC_006786 zgc:153911 coding upstream 66087 35974362 ~ 35976986 (-)
XLOC_006787 si:ch211-67f13.8 coding upstream 75722 35983997 ~ 35984530 (-)
XLOC_006788 si:ch211-67f13.8 coding upstream 76346 35984621 ~ 35985772 (-)
XLOC_006471 BX537274.2 misc downstream 25639430 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 35078110 825904 ~ 826225 (-)
XLOC_006775 CU138575.1 non-coding downstream 533651 35370569 ~ 35370684 (-)
XLOC_006774 NA non-coding downstream 614898 35205297 ~ 35289437 (-)
XLOC_006773 CR932983.2 non-coding downstream 709576 35182994 ~ 35194759 (-)
XLOC_006769 BX649403.2 non-coding downstream 1260054 34644150 ~ 34644281 (-)
XLOC_006797 CR361558.1 non-coding upstream 490985 36399260 ~ 36399375 (-)
XLOC_006804 BX927407.1 non-coding upstream 679495 36587770 ~ 36612159 (-)
XLOC_006814 NA non-coding upstream 1087358 36995633 ~ 36997760 (-)

Expression


Co-expression Network