CI01000001_11898621_11898914


Basic Information

Item Value
gene id CI01000001_11898621_11898914
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11898297 ~ 11900188 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_11898621_11898914.mRNA
GGATAAAAAAAAAAATTAACATCCAAATGGCACATCATCTCAAAAAATAGTAAATTGTAAAAGACTCCGCTGTATAGGCAGTAAACGTGATGCAAACCAAATAAAACCAAACTGTGATGATGAAAATGAGACTGATCCTGAGTATTGTGACTACTAAACCATCAACAGCATGCCTTTGATCCTGTATCGTCTTAGGCTTGCATAACGCTTGCGTAACGGCCCGATCATGATGAGGAGGGGTCAAGACAAGCACAAAGGTTTGTAACAACTGACAGGCTGCTCTCAAAATCTCCACTGTTAAAGTGCATTTAAGCGGAAGGAAGGATGGACGAAAATGTCCCTCTCCATCTTCTGCCTGCCTTCGTTACGATCGCGCCACTCCCTGCGACGCACGCTGTGTCACGGGAGCGCAAGACAACGCGCCGCAGACGTCAGAGCCCCCATGGGCCGTCACCTAGCAACAGCTCAGAATCAGATTGCATCACAATCCAGCAGGCAGAAAACACCTATGAACAAACAGCAGCTGTCTGCCTCCCCGAATCACTGCCTCTCTCCAATACTGCCCTGTTTAACCTCCAACCACAGTCCTGGGAGGAATACACTCACCGTAATCCATGATCATATCACAAAACACCTGTGGTCCATGATACTGAAGTGACAGTGCTTTAATTGCGAAGGTGACATCTCTGATGCGAACAGCTTCATTAGACTAAATGTGTAGAACACGCTCTAATTTTATAAACAAGACTTAATGGCGCAATCAGTCATTTTTACCTCACTAAAAAGTTGCACATAAATAAAAATGAACAGAATTAAAAAAAAAAAAAAAAAAAAAAAAAAAATGATCTCAGTAAATGGAGGATAATGATGAAAATATATACACTACCAGTCAAAAGTTTGGAAACATTACTATTTTTAATGTTTTTGAACGAAGTCTCTTATGCTCATTAAGGCTGCATTTATTTCATAATAAATACAGAAAAAACAATAATATTGTGAAATATTATTACAATTTAAAATTATGGTTTTTTATTTTAATATATTTTAAAATATAATTTATTTTTGTGATCAAAGCTGAATTGTCAGCATCATTACTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTGTAATATGCTGATTTATTATCAATGTTGGAAACAGTTGTGCTGCTTAATATTATTTTATAACCTGTGATAATTTTTCAGGATTCTTTCATGAATAAAAAGTTAAAAAATATCAGCATTTATTTAAAATAGAAATCTTTTGTAACAATATACACTACCGTTCAAAAGTTTGGGGTCAGTAATTTTTTTTCTTTCTTTTTTTTTTGAAATAAATTAATACTACGGATGTGTTAAATTGATAAAAAGTGATAGTAAAGATTTATATTGTTAGAAAAGATTTATATTTTAAATAAATGCTGTTCTTTTTAACCTTTTATTCATCAAAGAATCCTGAAAAAGTAATCACAGGTTATAAAATAATATTAAGCAGCACAACTGTTTCCAACATTGATAATAAATCAGCATATTACAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGATCACAGAAATAAATAATATTTTAAAGTATATTAAAATAGAAAACCATAATTTTAAATTGTAATAATATTTCACAATATTATTGTTTTTTCTGTATTTATTATGAAATAAATGCAGCATTAATGAGCATAAGAGACTTTGTTCAAAAACATTAAAAATAGTAATGTTTCCAAACTTTTGACCGGTAGTGTAAATAAAAGCTGTTTTATGGTGTGGGTTACCTCTCAATGTAAAAAAATAATAATACTAAAACTGAAATAACTACATAAACTAAAGTAGAAAGCTAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_11898621_11898914.mRNA True 1892 mRNA 0.33 1 11898297 11900188

Neighbor

gene id symbol gene type direction distance location
CI01000001_11809724_11812692 LZIC coding upstream 84853 11809427 ~ 11813444 (+)
CI01000001_11756218_11760009 NA coding upstream 136800 11756161 ~ 11761497 (+)
CI01000001_11656975_11660666 TARDBPL, TARDBP coding upstream 236431 11656029 ~ 11661866 (+)
CI01000001_11440491_11445508 NA coding upstream 452757 11439979 ~ 11445540 (+)
CI01000001_11431153_11431434 NA coding upstream 466710 11429876 ~ 11431587 (+)
CI01000001_11990189_11991073 AURKAIP1 coding downstream 87889 11988077 ~ 11991195 (+)
CI01000001_11994138_12003906 NA coding downstream 93950 11994138 ~ 12004100 (+)
CI01000001_12006266_12048809 DVL1A, DVL1B, DVL1 coding downstream 105740 12005928 ~ 12049045 (+)
CI01000001_12058281_12060612 NA coding downstream 157567 12057755 ~ 12061261 (+)
CI01000001_12088244_12091260 NA coding downstream 187979 12088167 ~ 12091494 (+)
G19490 NA non-coding upstream 9787 11888104 ~ 11888510 (+)
G19489 NA non-coding upstream 10414 11887468 ~ 11887883 (+)
G19488 NA non-coding upstream 11096 11886948 ~ 11887201 (+)
G19438 NA non-coding upstream 22045 11852354 ~ 11876252 (+)
G19435 NA non-coding upstream 67174 11830532 ~ 11831123 (+)
G19469 NA non-coding downstream 7429 11907617 ~ 11967369 (+)
G19512 NA non-coding downstream 91844 11992032 ~ 11992375 (+)
G19473 NA non-coding downstream 154740 12054928 ~ 12055598 (+)
G19538 NA non-coding downstream 209375 12109563 ~ 12481405 (+)
G19548 NA non-coding downstream 243432 12143620 ~ 12144142 (+)
G19395 NA other upstream 216480 11681322 ~ 11681817 (+)
G19314 NA other upstream 339624 11501194 ~ 11558673 (+)
G19039 NA other upstream 1044314 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 1358451 10538388 ~ 10539846 (+)
G18937 NA other upstream 1421908 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 1613216 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G11085 NA non-coding NC_053112.1 CM020909.1 39046412 ~ 39086916 (+)