CI01000001_11994138_12003906


Basic Information

Item Value
gene id CI01000001_11994138_12003906
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 11994138 ~ 12004100 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_11994138_12003906.mRNA
TCTGCACTGCCTTGATCTTACCATGTGCCTGGGCACAAAACAGCATGCCGAGTGTGGTTGTGGAGGCGAGGAACCTTACTGTTCCAGCAGGGTCAGACGTCGTTCTGCCGTGTCATAACCAGCGGATGGTTTGGAGGCAGGATCGCCTGCGGGACCGCCAGCGCGTCGTGCACTGGGACCTGATCCGGAACCAACCCGATTACACTGTGGAGCGCATTTTAGATATGTTCTCAGGGGGGACAGAGCGCTTGTACAATGACTACAACAGGGGCCGAATTACTATTTCAAAAGATGCCTTCAGCGATGGAAACTTCTCACTAGTTATCAATAACGTGGATGTGAATGATAAAGGTATCTATACCTGCAACCTACATCACCACTATTGCAAAGTCCACCAGTCCATTCAAATCCAGCTCAACATCACTAAATCACCTCGAAAGGAAAAGCGTGTCTGGGAGGGCGATAAAACCGTGTTTGTGGTTTTGGTGGGGAAGAGCGTGGTGCTTCCCTGTGTGAACCGCAGACAATTGTGGACGGACAGTCAGAGGGACGAGGGCCAGCAGCAGGTGGTCCACTGGGACTGGCAGGCTCCTGGAGTCACCCGTGACCGAGCAGACCGCCTCGTCGACATGTACGCTTCCGGAGAGAATCGGCAATACGGGCCGCTCTTTCTCCGGAATAAGATGAACATCTCAAGAGATGCCTTCTCCATTGGGGATTTCTCCCTGAGCGTCCATAACATTCAGCCCTCTGATAAAGGCCTGTATTCCTGCCACCTTCACCATCACTACTGTGGCCTACATGAAAGACGAATCTTCAGGGTGATCGTCGGGCCTTCTGTCCAGCCCTTGCCTCCAGCGCGCTCCTCTACTGAAGCACCGAAAACTCCTTCTCATCCTGTCCTGCCTGCTGATAACACACCTGTTAACAGCTCCAAAGAAATAATGTCCAGCAAAGATAAGGGCCATACCTGCCTGCTCATTGTATGTGGAGGAATCCAACGACTGACTAACATTTTCTTAGCAGCAGTGAAAGCAGCTAAAAATACAAACAGGGTGGAAGCACCTCACGTCCTCAATGTAATCCTGCCTGAGAATCAAACTCATCTCCTGCACCAAGTGGGCTACATCCTGGCAATCTTCCTGCTGCTTCTCTTAATGCTCATTGGCATCATCATGACCACGAGGCACTGCAAAAAGAAAGGGCTTGAATTTGAGGTTCGAAGGTCTGAGCGGACGTCCATTGAGCTCGATGCCACAGAACTGCAACCCTACAATCAGGAAGACTTGCGACTGGACTACAAGAACAACATAATGAAAGAAAGGGCAGAGGCAAACAACTATCCCTCTCCAAAAGTTATTGATCTTGACAGAGGAATTTTGAGTCCTCTTGACCAGGACTTTTTTGGTCCATTGTCTTTTTTCATTCTGTTTCACAGCATTATGTAGAGGGCACAATTGCAGTTTATTTGCTTTTGCAATATGAGCATTTTTCAATTGTCATCATTTTTCCAGCTATTTCCTTGGTCAGTAATTCTCATTTACATACAGTATGTTATGAAGCATTTATGCAGTAGTTTTTATTTGATCTGGAGTGTACATTTATCTTTAAAGTTTGTATAGAGGACCAATGTACAAATACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_11994138_12003906.mRNA True 1642 mRNA 0.48 10 11994138 12004100

Neighbor

gene id symbol gene type direction distance location
CI01000001_11990189_11991073 AURKAIP1 coding upstream 2943 11988077 ~ 11991195 (+)
CI01000001_11898621_11898914 NA coding upstream 93950 11898297 ~ 11900188 (+)
CI01000001_11809724_11812692 LZIC coding upstream 180694 11809427 ~ 11813444 (+)
CI01000001_11756218_11760009 NA coding upstream 232641 11756161 ~ 11761497 (+)
CI01000001_11656975_11660666 TARDBPL, TARDBP coding upstream 332272 11656029 ~ 11661866 (+)
CI01000001_12006266_12048809 DVL1A, DVL1B, DVL1 coding downstream 1828 12005928 ~ 12049045 (+)
CI01000001_12058281_12060612 NA coding downstream 53655 12057755 ~ 12061261 (+)
CI01000001_12088244_12091260 NA coding downstream 84067 12088167 ~ 12091494 (+)
CI01000001_12280407_12327837 NA coding downstream 274671 12278771 ~ 12327954 (+)
CI01000001_12486765_12495297 DCJ11, DNAJC11A, DNAJC11 coding downstream 481446 12485546 ~ 12495518 (+)
G19512 NA non-coding upstream 1763 11992032 ~ 11992375 (+)
G19469 NA non-coding upstream 26769 11907617 ~ 11967369 (+)
G19490 NA non-coding upstream 105628 11888104 ~ 11888510 (+)
G19489 NA non-coding upstream 106255 11887468 ~ 11887883 (+)
G19488 NA non-coding upstream 106937 11886948 ~ 11887201 (+)
G19473 NA non-coding downstream 50828 12054928 ~ 12055598 (+)
G19538 NA non-coding downstream 105463 12109563 ~ 12481405 (+)
G19548 NA non-coding downstream 139520 12143620 ~ 12144142 (+)
G19621 NA non-coding downstream 300913 12305013 ~ 12369030 (+)
G19673 NA non-coding downstream 518573 12522673 ~ 12538554 (+)
G19395 NA other upstream 312321 11681322 ~ 11681817 (+)
G19314 NA other upstream 435465 11501194 ~ 11558673 (+)
G19039 NA other upstream 1140155 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 1454292 10538388 ~ 10539846 (+)
G18937 NA other upstream 1517749 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 1509304 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021769 mxra8b coding NC_007134.7 CM002907.2 29889089 ~ 29906163 (+)