trnap-ugg_54


Basic Information

Item Value
gene id trnap-ugg_54
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 2161223 ~ 2161293 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_2405
ggctcgttggtctaggggtatgattctcgctttgggtgcgagaggtcccggttcaaatcccggacgagccc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_2405 True 71 tRNA 0.61 1 2161223 2161293

Neighbor

gene id symbol gene type direction distance location
trnaf-gaa_117 NA coding downstream 235 2160917 ~ 2160988 (-)
trnaq-cug_67 NA coding downstream 397 2160755 ~ 2160826 (-)
trnai-aau_110 NA coding downstream 1452 2159699 ~ 2159771 (-)
trnaf-gaa_116 NA coding downstream 1607 2159545 ~ 2159616 (-)
trnaq-cug_66 NA coding downstream 1769 2159383 ~ 2159454 (-)
trnaq-cug_68 NA coding upstream 823 2162116 ~ 2162187 (-)
trnai-aau_111 NA coding upstream 1138 2162431 ~ 2162503 (-)
trnaq-cug_69 NA coding upstream 2175 2163468 ~ 2163539 (-)
trnap-ugg_55 NA coding upstream 2641 2163934 ~ 2164005 (-)
trnaq-cug_70 NA coding upstream 3535 2164828 ~ 2164899 (-)
G135542 NA non-coding downstream 60982 2099996 ~ 2100241 (-)
G135480 NA non-coding downstream 283101 1877914 ~ 1878122 (-)
G135435 NA non-coding downstream 408276 1752733 ~ 1752947 (-)
G135434 NA non-coding downstream 408767 1752156 ~ 1752456 (-)
G135433 NA non-coding downstream 411420 1749595 ~ 1749803 (-)
G135546 NA non-coding upstream 197185 2358478 ~ 2358691 (-)
G135627 NA non-coding upstream 415839 2577132 ~ 2577488 (-)
G135629 NA non-coding upstream 417976 2579269 ~ 2579702 (-)
G135658 marcks,LOC107709525,LOC107676707,LOC107570520,LOC107715691,LOC107670244 non-coding upstream 482888 2644181 ~ 2647081 (-)
G135674 LOC107715685,LOC107670242,LOC107714794 non-coding upstream 571310 2732603 ~ 2737889 (-)
G135527 LOC107731523,LOC107660498,LOC107575177,LOC107657216,LOC107549340,LOC107730404 other downstream 147696 2005549 ~ 2013527 (-)
myo6a myo6a,myo6,LOC107660505,LOC107707325,LOC107680308 other downstream 284931 1840128 ~ 1876292 (-)
pnrc1 pnrc1,LOC107731511,LOC107660527 other downstream 500687 1655096 ~ 1660536 (-)
pcmt pcmt,pcmt1,LOC107660522,LOC107742992,LOC107550534 other downstream 589524 1546487 ~ 1571699 (-)
G135279 NA other downstream 1050362 1110425 ~ 1110861 (-)
G135548 NA other upstream 202760 2364053 ~ 2364824 (-)
cep170bb LOC107670249,LOC107715684,LOC107714793,LOC107550527 other upstream 579259 2740552 ~ 2757430 (-)
nrxn3b nrxn3b,LOC107747953,LOC108410406,LOC106571678,LOC102203786,LOC101486071,LOC105017684 other upstream 1476996 3638289 ~ 3870066 (-)
LOC122325550 NA other upstream 1807470 3968763 ~ 3975258 (-)
LOC122324820 ccdc85cb,LOC107678669,LOC107747948,LOC107572128,LOC107555299,LOC107740595,LOC107751728,LOC107668618,LOC105902331 other upstream 2403063 4564356 ~ 4582097 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnap-ugg-46 NA coding NC_048579.1 CM023233.2 41281506 ~ 41281576 (+)
striped catfish (Pangasianodon hypophthalmus) trnap-ugg_12 NA coding NC_047606.1 CM018552.1 4914316 ~ 4914386 (-)
mexican tetra (Astyanax mexicanus) trnap-ugg_12 NA coding NC_035919.1 CM008322.1 10219216 ~ 10219284 (+)
mexican tetra (Astyanax mexicanus) trnap-ugg_44 NA misc NW_019171833.1 APWO02001431.1 31209 ~ 31279 (+)