trnat-ugu_52


Basic Information

Item Value
gene id trnat-ugu_52
gene name NA
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056718.1
NCBI id CM032087.1
chromosome length 27616869
location 4449383 ~ 4449455 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>unassigned_transcript_2443
GGCTCCATAGCTCAGTGGTTAGAGCACTGGTCTTGTAAACCAGGGGTCGCGAGTTCGATCCTCGCTGGGGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_2443 True 73 tRNA 0.59 1 4449383 4449455

Neighbor

gene id symbol gene type direction distance location
tshr LOC107728338,LOC107549347,LOC107657214,LOC107681439,LOC107742823,LOC107569215 coding downstream 902179 3537873 ~ 3547204 (-)
LOC122324861 rhob,LOC107730407,LOC107704819,LOC107569216,LOC107549346,LOC107657220,LOC105907285,LOC103025336,LOC106607565 coding downstream 975978 3471994 ~ 3473405 (-)
LOC122324803 rev3l,LOC107675651,LOC107705450,LOC107712405,LOC107676701 coding downstream 1228834 3196313 ~ 3220549 (-)
LOC122324357 tshr,LOC107657214,LOC107728338,LOC107569215,LOC107681439,LOC107549347,LOC107742823 coding downstream 1270101 3132081 ~ 3179282 (-)
rev3l rev3l,LOC107675651,LOC107705450,LOC107712405,LOC107676701,LOC107569208 coding downstream 1600758 2787139 ~ 2848625 (-)
tmem242 tmem242,LOC107560201,LOC107678668,LOC107679673,LOC107555301 coding upstream 219224 4668679 ~ 4674148 (-)
lgals8a lgals8a,LOC107747965,LOC107678666,LOC107560204,LOC107679690 coding upstream 246059 4695514 ~ 4705308 (-)
bcl11bb LOC107742200,LOC107678676,LOC107679682,LOC107560207,LOC107555305 coding upstream 399924 4849379 ~ 4881627 (-)
LOC122324970 cldn20,LOC107560197,LOC107678665,LOC107555306,LOC107679668,LOC107742202 coding upstream 468352 4917807 ~ 4928160 (-)
LOC122324969 tiam2,LOC107560208,LOC107678678,LOC107742216 coding upstream 479407 4928862 ~ 4966781 (-)
G136012 NA non-coding downstream 3180 4445773 ~ 4446203 (-)
G135975 NA non-coding downstream 13392 4098935 ~ 4435991 (-)
trnat-ugu_51 NA non-coding downstream 150828 4298483 ~ 4298555 (-)
G135980 NA non-coding downstream 177694 4271296 ~ 4271689 (-)
G135978 NA non-coding downstream 181804 4266524 ~ 4267579 (-)
G136069 NA non-coding upstream 287094 4736549 ~ 4736806 (-)
G136175 NA non-coding upstream 568906 5018361 ~ 5018866 (-)
G136176 NA non-coding upstream 584144 5033599 ~ 5033804 (-)
G136180 NA non-coding upstream 641845 5091300 ~ 5097061 (-)
G136188 NA non-coding upstream 662718 5112173 ~ 5119766 (-)
LOC122325550 NA other downstream 474125 3968763 ~ 3975258 (-)
nrxn3b nrxn3b,LOC107747953,LOC108410406,LOC106571678,LOC102203786,LOC101486071,LOC105017684 other downstream 579317 3638289 ~ 3870066 (-)
cep170bb LOC107670249,LOC107715684,LOC107714793,LOC107550527 other downstream 1691953 2740552 ~ 2757430 (-)
G135548 NA other downstream 2084559 2364053 ~ 2364824 (-)
G135527 LOC107731523,LOC107660498,LOC107575177,LOC107657216,LOC107549340,LOC107730404 other downstream 2435856 2005549 ~ 2013527 (-)
LOC122324820 ccdc85cb,LOC107678669,LOC107747948,LOC107572128,LOC107555299,LOC107740595,LOC107751728,LOC107668618,LOC105902331 other upstream 114901 4564356 ~ 4582097 (-)
si:ch73-111k22.3 LOC107742221 other upstream 561926 5011381 ~ 5012580 (-)
selenol sell,LOC107679675,LOC107558766,LOC107742218,LOC107742854 other upstream 575351 5024806 ~ 5029567 (-)
LOC122324433 LOC107727350,LOC107558762,LOC101885478,LOC106571404,LOC103026919,LOC106607809,LOC105897019 other upstream 711751 5161206 ~ 5360069 (-)
LOC122324832 enpp1,LOC107745282,LOC107685780,LOC107562320,LOC107733306 other upstream 1141883 5591338 ~ 5598666 (-)

Expression


Co-expression Network