CI01000001_12280407_12327837


Basic Information

Item Value
gene id CI01000001_12280407_12327837
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 12278771 ~ 12327954 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_12280407_12327837.mRNA
GTATAAACAAGTCAAACATTCAAATATTGACCTTCACTAATTTATCCCTGGCACTGCTGCATGCTGATCCCTACAACACAGTGTTTCTGTAATCAATCAGGCTGGGCTCAGGCTTTATTTCTGCTACTGGCTGCGAAGAAAGTGGATGGCTGTCTAGAGCCCTATACTAGTGGTTCTCAACTGGGGGGTCATGACCTTTTCCAACTCGATACATTGTTGGGCCTACCATAGTAATTTTAACATATTTCAATGTTTGATTTCACAGACATTTTTTGTATGCTTTTGTAAAATAAACAATTTTTGGTACATTCTTGGGTCAGATTTTACGTTAAAATTTGGGTCCTGAAGCAAAACCAATTGAGAAAACCACAGCCTTAGGCTACTATCCTCTTCTCTTCCCACTGTTCTGTATGATTGCCTGTTGAATCTGTGTGAACCGTTGTTAGCCTGGCTGGCTCTTTCTAAAAGACATGATGATATCTTTACCCATGCAGCAAAGACGTCACAGGGAGAAGCTGATTAACTGCTCCACTGCCCAAGAAGCTCAACTTTAGCAAAGCTCTTTCAGAGATCTGAGAAGTGAGAAGTTAACCCTTTGAGAGAGTGTTTTTTCTATTATCTCTGAGAATACGACTAGACTCCTTCAAGGACTTCAGAATTCAGAGCTGATCTCGAATTGCTAAAACTGCCAGTTTCCATAGCCACTTTTCCATCGTTGGGCCAAACCGTTCTCGTTGCTTAACCATTCCGATCCGTGCTGATCCGGCCCAGCTGATTTCGATATGGTTTCATTTTCCAATGTGGGGCTGATAATGGAGCTCTTTGGAATGTTTCGGTCTTTGCCTTGGTAATGCAAGAGTTTACAGATGGAATGAGATGTATGTAGTGACCACATTATGGAGGATGATCAGATATTTCTTTTAATTTTATAATTAACTTGTGTTTACTTTGCTCAAATAGCACACTTGGGCAGCTACAGAGAAACTGGCTGCCAGGCAACAGACAAGTGACCAATCCTGAGTGACGACATCACTACACACATTCTACTAGCATGGTTCAACATGGATAGCCAACTGTGCTGAGAATTCCGGGCTGAGAACAATTTGTAATTGTGCCGTTCAGAACCAAGCTAAAATGGAAATATAATTGGAACTGTTTCTCAACATTCTAAGACCCGTTCGGGCCGACCGTAGAAAAGTGGCTCATGCGTCCAGTACTAAGGGTGAATATTACGCGAAAACAGATTTCTATTAATTTGTGAGTGGCTTTCCTGTGTAAAATCAATTAAAATGTAAAATCATAAATTGACAGGGAGTCATTTCTTCAATTCTCAATTTTCAGAACTGTCCAACCCAGCCCCCAAGTTGCTGGGCCCTTCTGTAACAACACTTTATGGAATATTATTTTGCTTTTGTTTTTTTTGTTTTTAAAAAAAAAAAAAAAAAAAATAACCCTAAGAACAAGCAATAGTAATAGTGATGCTTGCCTTCATCAAATGTGCAACAGCAATTACAATGAATGATTATTACCATACGAGCTATGAGCTCTCGTCATAGAAATTCTCATTGCTCAGGTGGCCCATCGTTGTCCAGAGCATTGCGCGGGACAGAATGAAAGCAAAGCGATAAAGAGAGAAATGAGGACTCAAGTGCAGGGCCTTTGGGATGGAGCTGTCCCCTCTGGACTGCTTGAATGGCAGGCTGCACTCAGTCCTCCCCATGCTGCTCCATTTGCTAGGATATACTCTGATTTTACATCCGAGTCCCCAGAGCAGCAGGAATCCAAAAGAGCCTGGCCTGTTCGAGTTAGAATAGCACTTTTGCCACTAATGACAACCGTCGGCCCTCAGACCCTCCACAAAGGAAAGCACAACACTACATCAGCAACTTTTACTCAAAGCCATTCCTCACACGGGACCAATGAGGTGACCCCCGTCACCGTGCTCATGGTGCGTACGGACTGGGCTAATCATTCAGTTTTAATCACCAGGATATTCGCTCTTATCCGCTCTCTCTCTCACCCATCAGCCCCTCTGCCTGGCTTGGCCTCTGCCAAGCACATTCCCACTTTACAACTGTTCTTCCAGATTCCAGATAAATATCACCCTTTTATCAAGCAGATATGCTTTTCTTTTTGCTCTGTTTATTCATTAATATTCAAACTACCCACACGATATAAAATACGATTGCAGCACAATATCATGGCTGCATGTGAAGCCGTTGGACCTCATCAATCAGGGTTCAAGAGGTCACTATCGATTTCATCTTTTGGCACCGAAACAGTAAACAATATAAAACCACAGTTAAACATCTACAATGAGAGATCCCGAGCTCTCTGTAAACAGATCCACTCTGGCCGTCTGCACGGCTCCGCTATCCATCTCTCCATCTCTGGCGGAGTCAGGCGTCTTTTCAAACAAGGACCTCCTGTTGCGTCTGGCCCCTGCCTGCTGCTCGGAATACGTGACTCACCTGCCTCCACCTTGCATCCTGTTGATACGCTAGAGATGATGGAGACGCCCTACTCGTGCCCTCCTCCAGCTGTGCTCCAGATGTGTGGAGGAGAGGAGGGAATCCGGAAACTGGCCCATGCTGAGCAGAGGCGGTTCTGGGACAGAGAGGGGCAGTGTGGTGCAGTGATCACATCAAGTGAACCCTGGGGGCTCAGTGGGGGAGTGAAACTCCCAAACGAGGCAGGAAAGAGGAAGCACACCAAACCAAATCTGCCACCCCTCTGCGATTTACCATCAGATGCTGGAAAAATAATCACAAATAAAGAAGAAGAGGGAAATCTTCTCTTCTGTGTTTCTGTAAATAACATCAGAGAGCTGATTTCTTCAGCTGGAGGGATGTGGGAGAAGGAACTGATGTTATTGTGTGTGAATCAGGGTAAACAGGAGACAAAATCGGTTGTGGAAGGTGATAAAGTGAAACGAGTGAACGAGAAAGAGCACATGCAATGGGTAGAACACTGGCCCAGGTGCTGTCGTGCCCTAAATCAATGGCATCCACTCCTAGAGCATGCTGTCCTGCTGCCGGTGACTTGTGAGTGGTTACTCGCAAAGCTCCTTGGAACATACCCAGGTCTTATTTTCCTATCATTCTCCTTACGTAACACAAAGACAACACCCTCAGTCTGGCTTCCCATCCACTCTCTTTCAGATGGAGCAGGACTGATCGTTTCCAGCTCCACTGTGCCAGGAGAGAGCCTGCTGGTTAACCTTTTTGCTCTCTGCCCATTGGCACATGGACAAATGGGTGTGAGTGGCTCTTGCCCAGGGGGCCAGTGGGTGGCATGGTTGCCCTTGGTCAGGCCCCAGGCTTGGCAGCTCTTTTATGGGGCATTGTGTCCTCTCAGGCTTGGGCCCTTTCTCTACACTGGCGGTGCTGCTGTAGGTTTTAATCAAAGCTGTGTCTTTTGGAGTGCTCTGCTGGGAGCTGTGCTGGAGTGGATGCTGGGACAGGAAGAAGGGAGGAGTAGCAAAACAGTGAGAAACACAGTGAAAGAGAAAAAGAGAGGCGTATTGCATGAGGCCATGAGAGTGGCAGACTACAATGTCATTGCAGGTCATCAGATGAGAGACACTTATTGTTTGATAGTTATGATGGGACAAACAGTCAGCGTGGTCGCCATGGCAACCTCTGTCCTGCCTAAATCTAAACCATTTGCATCAGCAGCATCATTGACGCTGGATAAGTGGCACTCCATTACACCTCAAATCCACCACTGCTGGCCTGGCTTACAGCCAATAAAGTCTATAGACAGTCTATTTAAAAATACACAAATCCTACTCTTGTGGGATCTGGGAACATGTAGATTCACCAGAGCTGCTTCAGACCCCAGGTCAGTAACTCTACGGTGTAATCCTGTCACAGTTGGCAGTAGAGCCATCCCTCGGGGTACCAGGGTGCCAAGACTGGCAGTGCCCACACAGAGAACGCTAGAGCTGGCGATAGCCTGCAGGTGCTGTCTGAGAGATAGCGCCGTTCTGATTAACGTTCTGCCCTCCTGTCATCAGGGCCAGAGGGAAAGAGAGAAGGACGAGAGGAACAGGCTGTGGAATATGACCATGGAGAAGTCCTCCTTGGGCAGCCCAAATGAGGAGCAGGAATGGCACTCGCAGCCGACTCTGCGTTATGGCTCCTCTGCGCACGCCCCGCCACGGCCATTCAATACTCATGATGCTCGGTGCCGCGCCCTCTTTCAAAGCTTTTGGCCACCAACCTGCCGACTCAACAGAAAGCAGTGGGACGTGGAGTACCCTGTAAACAGTGCATCAGTCAGACTGCCTTTGTTTGACTATCAGAGTGCTAGACAAGCAGCCCACTGCCTCTGCCCTCTGTCCCCGCTTTGTGCTGAGATCATGATAAAGAGACAGTGCGACTGTGAAGGTCACACTAAGATGGAGTCAAATCCAGCAAAATCTCTCCTTAACAGCATTTACCTTTCGAATAACATCAAGGCAGGGCCGAAACTTCAATGGGCCTTACCATGGATAACAAAGGAGCCATGTTTAGGTGTTAATAAGAAACCATGTCAGGCTTCAACAAAGCCACCTCGTGTCACAGATATCTGCAGGAGCAGAGATGTGAGGTGGAAACTAGATGTCCCTAGGCTGGAGAAGAGGGACAAAAAGAGGAATATGCTTCTAATACATCATCCGATCTCATTTACAGATCATTTACCTGCAGTGGGTTTCAGCCATGTATTTCATCATATCCAAAGGACATGGTGGTGGCTACACCTGTTTAGCTCCAGCAATGCGCACAGGCAATGTTGCAAAGCCTTATCATATTCTATTTCTTTCATTTTTCTTTTTGCATTCCCTTTGCCAGGCTAAAAAGGATGACAAATAGTCTAAATAAACCAGATTTGCATTTCCTGAAGGAAATACCTGTACATGCAAAGTAGCACAAGAATAGTGTTGAGGTTTTTTTAAATAAGCTTTTGGTTTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_12280407_12327837.mRNA True 4957 mRNA 0.46 18 12278771 12327954

Neighbor

gene id symbol gene type direction distance location
CI01000001_12088244_12091260 NA coding upstream 187277 12088167 ~ 12091494 (+)
CI01000001_12058281_12060612 NA coding upstream 217510 12057755 ~ 12061261 (+)
CI01000001_12006266_12048809 DVL1A, DVL1B, DVL1 coding upstream 229726 12005928 ~ 12049045 (+)
CI01000001_11994138_12003906 NA coding upstream 274671 11994138 ~ 12004100 (+)
CI01000001_11990189_11991073 AURKAIP1 coding upstream 287576 11988077 ~ 11991195 (+)
CI01000001_12486765_12495297 DCJ11, DNAJC11A, DNAJC11 coding downstream 157592 12485546 ~ 12495518 (+)
CI01000001_12503839_12514653 ASXL1 coding downstream 175574 12503528 ~ 12515328 (+)
CI01000001_12556923_12557900 NPBWR2 coding downstream 228229 12556183 ~ 12558099 (+)
CI01000001_12568625_12571184 NA coding downstream 240580 12568534 ~ 12571943 (+)
CI01000001_12580225_12599311 NA coding downstream 252020 12579974 ~ 12599587 (+)
G19548 NA non-coding upstream 134629 12143620 ~ 12144142 (+)
G19473 NA non-coding upstream 223173 12054928 ~ 12055598 (+)
G19512 NA non-coding upstream 286396 11992032 ~ 11992375 (+)
G19469 NA non-coding upstream 311402 11907617 ~ 11967369 (+)
G19490 NA non-coding upstream 390261 11888104 ~ 11888510 (+)
G19673 NA non-coding downstream 194719 12522673 ~ 12538554 (+)
G19697 NA non-coding downstream 217996 12545950 ~ 12546380 (+)
G19702 NA non-coding downstream 224073 12552027 ~ 12552458 (+)
G19704 NA non-coding downstream 227145 12555099 ~ 12555464 (+)
G19717 NA non-coding downstream 249251 12577205 ~ 12577419 (+)
G19395 NA other upstream 596954 11681322 ~ 11681817 (+)
G19314 NA other upstream 720098 11501194 ~ 11558673 (+)
G19039 NA other upstream 1424788 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 1738925 10538388 ~ 10539846 (+)
G18937 NA other upstream 1802382 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 1185450 13514115 ~ 13517063 (+)

Expression


Co-expression Network