G142954


Basic Information

Item Value
gene id G142954
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1090243 ~ 1102107 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU211177
AATAAGCCCATAGTCCAATCAAATCCAACTGGCGGATGGTGTCTACCTGTGGAGTAACTTGAGAAGGTCCTTTTTGAGTGGTGGTGACTCCTCCACCGCCTGCAGCTCCTGCAGCAGATGCTCCTGAAGGAGCTGCTGGGGTTGCAGGTGTGGTGCCAGGTTTGACAGTCACAGCTGCCGCAGACGATTGCGTAGATCCTTTCTACAATGCAGATGTGACAATGGCAATCATGTTTAGAGCACCGCAGCTCAACTGCACCAAAATAGTCTCGCAGAACACTTTTGCTGGACAGATATTTATTTGCATAGGAACATGAATGTGacctttattttttcagatataGAACCTGATAACTTAGTAGTTTCGGGACCATTAATGATCACACAAACAGCAGTTAACAGCAAGCAAATCAAAAGCAACTCCAGCTGTAACTAGATTCAGGAAAGTGAGTCATAGGGCAGACACTCCTCATGGGAGACACCATGTCCTGCCACAACCAAATATCCCAACATGCTCTGTCCAAAGGCAGCAGATAACCAcgagaaaaatgaaaagaacatttatGTTAACAATTAAAGTCTCAATAAGCAAACAACAAAGTCCTCTAAGAGTCcatacaaatacaaaagaaGTATATAAAGACTTCTTTGTCTTCattgctgtgattttttttttcctgtcctcTCATAGATTTAATGGTGCTGGTTGTTAAATCGAGCCTCTTGACAACCAGACACAACACAATGCATACTGTGGCAGCAACTTTTGCACTGCCGAGAGGCCTTCcgcttttcttcagtttttcagtCCACAAAAAGCCTGTATCtcatattatttcaaataagttATTGCATGATGTCCCATGACTACtggagcataaaaaaattaagcattaaaaatgtatttagttctTCAGATGAAAGATCTTGCAACTGAGCATATCTAAAATTCCctgatatttcagaaaaaaagaggaactcTGTGGAGGAATCAGCTCTTAATAAACGATCAATTCATGCTACACATTATATGCAgatatttaaagtcattttcatAGTTAAGAATATAGACTTGAGATCAGAAGACAAAGTAGCTTTCGACATTTTTCATtaatgtgctttaaatgttctttCACATAAACTTTatgtaaaacaatgaaatgtgAAATACTTTTCCTAGTTCTCTATTCATATACGAAACCACaccatataaaaacacagcagcaaaATAGGCACCTGAATACTTTCAAGAAGGAAAAAGCAGATGACTATCTACATCCGTTGGAGACGCGATGGGTCGATAAAGCTGTAGAGTGCAATATAAACCTCTATGTGTAATATCTTTCCATCAGACAAATAACTAGGATAATGTGAATAAATGGAGTTGAAAAAGggaacatttgaaaaaaaaagaaggatttTACCTCATATTGCGCAGGTTTCGCTGTGGAGACCTGAGATGTTGTGGTGGGTGTGACCTGCTGAGACTTATATCCAGTAAGAGACACCTGTTGCTCTACAGCGACGTCCTGCAGGGCCGGTTGGTCCCGCGTGCCGCGGATCCAGCTGAAGATCTGGCCCATGTCTATCGGTGCTGAGTGTGTGACGCCGTCTCTGTGGCTCTGCTGTGTCTGCTGTCTGAGCTACAGCATGTTCCAGGCACAGGGAGCAGGGGGAGGAGCCAGGGGAGTGGTTAGGGCCAGT

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048468 cell development biological_process
GO:0022607 cellular component assembly biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0014866 skeletal myofibril assembly biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0006996 organelle organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0070925 organelle assembly biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0016043 cellular component organization biological_process

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU211177 True 1704 lncRNA 0.42 2 1090243 1102107

Neighbor

gene id symbol gene type direction distance location
cd8a NA coding upstream 13107 1074249 ~ 1077136 (+)
cd8b LOC107754642,LOC107665224,LOC107600931,LOC107739674,LOC107662663 coding upstream 21880 1064842 ~ 1068363 (+)
zmat1 krcc1,LOC107600930,LOC107662001,LOC107739673,LOC107584622 coding upstream 27103 1056331 ~ 1063140 (+)
grin1a grin1a,LOC107662014,LOC107754622,LOC108435476,LOC108278500,LOC107600932 coding upstream 42232 1023624 ~ 1048011 (+)
zgc:92275 zgc:92275,LOC107662064,LOC107754619,LOC107665231,LOC107739715,LOC105902521,LOC105024189,LOC106565467 coding upstream 74943 1005795 ~ 1015300 (+)
pcsk1 LOC107739678,LOC107661910,LOC107600928,LOC107665244 coding downstream 14484 1116591 ~ 1131625 (+)
ell2 ell2,LOC107739680,LOC107665220,LOC107600927,LOC107754629 coding downstream 37138 1139245 ~ 1152504 (+)
nudt2 nudt2,LOC107739745,LOC107661859,LOC107600925,LOC107579639,LOC107584670,LOC107754633,LOC107665228 coding downstream 78348 1180455 ~ 1184070 (+)
ubap1 ubap1,LOC107661828,LOC107739682,LOC107754631,LOC107665242 coding downstream 90292 1192399 ~ 1199773 (+)
dcaf12 dcaf12,LOC107661821,LOC107739683,LOC107600922,LOC107754635,LOC107584538,LOC107665237 coding downstream 101287 1203394 ~ 1212789 (+)
G142933 NA non-coding upstream 6970 1082167 ~ 1083273 (+)
LOC122326171 NA non-coding upstream 8942 1048378 ~ 1081301 (+)
G142941 NA non-coding upstream 16202 1072268 ~ 1074041 (+)
G142866 NA non-coding upstream 173280 916621 ~ 916963 (+)
G142832 NA non-coding upstream 278186 759275 ~ 812057 (+)
G142963 NA non-coding downstream 3378 1105485 ~ 1105817 (+)
G142964 NA non-coding downstream 4639 1106746 ~ 1106952 (+)
G142965 rfesd,LOC107661841,LOC107600903,LOC107735162 non-coding downstream 6215 1108322 ~ 1178639 (+)
G142952 NA non-coding downstream 98629 1200736 ~ 1201244 (+)
G142950 NA non-coding downstream 99269 1201376 ~ 1202423 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 34318 1050838 ~ 1055925 (+)
alpk2 LOC107600938,LOC107662700 other upstream 284137 735722 ~ 806106 (+)
glrx glrx,LOC107661879,LOC107665229 other downstream 50997 1153104 ~ 1156142 (+)
LOC122326311 NA other downstream 125891 1227998 ~ 1229055 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other downstream 927997 2030104 ~ 2056679 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other downstream 1131552 2233659 ~ 2237195 (+)
gnrh2 LOC107595723 other downstream 1727007 2829114 ~ 2830356 (+)

Expression


Co-expression Network