G142965 (rfesd,LOC107661841,LOC107600903,LOC107735162)


Basic Information

Item Value
gene id G142965
gene name rfesd,LOC107661841,LOC107600903,LOC107735162
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1108322 ~ 1178639 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU211191
tatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacaattgtttacatttttgcagattttaggcttttattttgcaaaaccTACCAAACGGAGCTGATAGACAGGCATCACTGTGAATCATAAAGATGAAGAGAGATCCTGGCACCGTCTCAGAAAAGGTCTATGATATTATTTTGATTCATGATGTCAAATCGCAGTTTTATTCATGCCGACTCACTCTGAAATCATCAATCTTAATATATGCAGTTCCCTTAGGATCCCTGAAGCTCTCATCTCACTGGTGCTGCCACACTAAACGTCTTCATCTGCATTCACGTCTGCTTCTCCATCCTCCGACTCCTGTGCTTTTCTGAGTTCTGCCCTGCCCTTCTCGGTCTGATAATAGTCTGACTCAATCCACCCAGGGCAGTTGGACAACGTCACAAAGATGTCTTCGTCTACTTCTGTCACTTTGTGCACTCTCTGCTTTATGCCTTTGGAATACCACCGCGGAGTAGGGACTTTTTCTGCGGGGTTGCTGGCCTTGTATAACCCCTCACCTTCTGCCAGAGTGATCTTATACTTGTGCTTTGGGCACACAATACAGAGCTTGTTGTTGATTTCC

Function

symbol description
rfesd Predicted to enable 2 iron, 2 sulfur cluster binding activity and metal ion binding activity. Orthologous to human RFESD (Rieske Fe-S domain containing).

NR:

description
PREDICTED: Rieske domain-containing protein-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211191 True 630 lncRNA 0.40 2 1108322 1178639

Neighbor

gene id symbol gene type direction distance location
cd8a NA coding upstream 31186 1074249 ~ 1077136 (+)
cd8b LOC107754642,LOC107665224,LOC107600931,LOC107739674,LOC107662663 coding upstream 39959 1064842 ~ 1068363 (+)
zmat1 krcc1,LOC107600930,LOC107662001,LOC107739673,LOC107584622 coding upstream 45182 1056331 ~ 1063140 (+)
grin1a grin1a,LOC107662014,LOC107754622,LOC108435476,LOC108278500,LOC107600932 coding upstream 60311 1023624 ~ 1048011 (+)
zgc:92275 zgc:92275,LOC107662064,LOC107754619,LOC107665231,LOC107739715,LOC105902521,LOC105024189,LOC106565467 coding upstream 93022 1005795 ~ 1015300 (+)
nudt2 nudt2,LOC107739745,LOC107661859,LOC107600925,LOC107579639,LOC107584670,LOC107754633,LOC107665228 coding downstream 1816 1180455 ~ 1184070 (+)
ubap1 ubap1,LOC107661828,LOC107739682,LOC107754631,LOC107665242 coding downstream 13760 1192399 ~ 1199773 (+)
dcaf12 dcaf12,LOC107661821,LOC107739683,LOC107600922,LOC107754635,LOC107584538,LOC107665237 coding downstream 24755 1203394 ~ 1212789 (+)
ubap2a ubap2a,ubap2,LOC107665236,LOC107661806 coding downstream 35261 1213900 ~ 1227997 (+)
mlnl mlnl coding downstream 59816 1238455 ~ 1241794 (+)
G142964 NA non-coding upstream 1370 1106746 ~ 1106952 (+)
G142963 NA non-coding upstream 2505 1105485 ~ 1105817 (+)
G142954 NA non-coding upstream 6215 1090243 ~ 1102107 (+)
G142933 NA non-coding upstream 25049 1082167 ~ 1083273 (+)
LOC122326171 NA non-coding upstream 27021 1048378 ~ 1081301 (+)
G142952 NA non-coding downstream 22097 1200736 ~ 1201244 (+)
G142950 NA non-coding downstream 22737 1201376 ~ 1202423 (+)
G142977 LOC107662880 non-coding downstream 36951 1215590 ~ 1246809 (+)
G142943 NA non-coding downstream 50909 1229548 ~ 1236155 (+)
G143139 wdr34,LOC107736865,LOC107584613 non-coding downstream 583743 1762382 ~ 1762837 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 52397 1050838 ~ 1055925 (+)
alpk2 LOC107600938,LOC107662700 other upstream 302216 735722 ~ 806106 (+)
LOC122326311 NA other downstream 49359 1227998 ~ 1229055 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other downstream 851465 2030104 ~ 2056679 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other downstream 1055020 2233659 ~ 2237195 (+)
gnrh2 LOC107595723 other downstream 1650475 2829114 ~ 2830356 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other downstream 2119351 3297990 ~ 3320013 (+)

Expression


Co-expression Network