G143149


Basic Information

Item Value
gene id G143149
gene name NA
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 1839332 ~ 1963020 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU211478
ttttgttccacCACCTTCTGCCTGCAAACGCTTTCCGTATCTCCAGTATAAGTAATTGTGGGATATTTTCTACCCACCCGAATTCTTTgccaaaatAACATGAAGCCTTGTTAAAAAAGTACATCTAGCAGAAAAAGATGCTTATAAAGATTCCTAACAAGACCCGAAagagaaatgattttaaaagggAGGTGACATAAAAAGCAAGTGAGTGAAAACTAACACCAGTCTTGAAGAATAAAGATGTGGTGTAAAGAAACCGCACTGAAAGGCCGGTCTGAGTTTCCACTGAGAGTTTGTGGTGCGTGGTGAGTCGAGATATGTGCATCTGAgtaaaagaaaaaccttttaacCACTGCtgtcttttacttttatttacctGATTGACTACACACCGCCGCTTCTTCGGTATCTTTAGAGTTTGGGTGTTTTTCTCACTTTGTTCCGAGGACAGATTTTCCAGGAAAAACAGAgtcatgtgtatttttttcatttgtgtgtggTGTAACAGATGCAGCTTCACCCTATGGAGGAATGCTTTTAGGCGTGTTAGACCTATTCTAAAAgtatgcaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtccaggtcACTTGTGATTTCTCTGGGAGTGTAAGGTGGAGTCGTCAAACAGTGGGTTTTTCACCTCCATCTCT

Function

GO:

id name namespace
GO:0032400 melanosome localization biological_process
GO:0051875 pigment granule localization biological_process
GO:0043473 pigmentation biological_process
GO:0033059 cellular pigmentation biological_process
GO:0051640 organelle localization biological_process
GO:0051648 vesicle localization biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211478 True 678 lncRNA 0.41 3 1839332 1963020

Neighbor

gene id symbol gene type direction distance location
LOC122326489 camkk2,LOC107739694,LOC107736868,LOC108437385 coding upstream 9180 1809407 ~ 1830152 (+)
snrpd3l snrpd3,smd3,LOC105014836,LOC106563120 coding upstream 30493 1807195 ~ 1808839 (+)
adora2ab adora2ab,LOC107736926,LOC107600912,LOC107675636,LOC107584529,LOC107739748,LOC107661642 coding upstream 34420 1796942 ~ 1804912 (+)
specc1lb specc1lb,LOC107662600,LOC107600876,LOC107675626,LOC107736902,LOC107584528 coding upstream 44690 1771331 ~ 1794642 (+)
sptan1 sptan1,spna2,LOC107675629 coding upstream 77627 1733733 ~ 1761705 (+)
slc31a2 LOC107661547 coding downstream 32767 1995787 ~ 1999047 (+)
LOC122326937 NA coding downstream 317561 2280581 ~ 2287288 (+)
LOC122326565 LOC107579035 coding downstream 655215 2618235 ~ 2627353 (+)
LOC122326563 LOC107579035,LOC107736917 coding downstream 668076 2631096 ~ 2656760 (+)
smarcb1b smarcb1b,smarcb1,LOC107661349,LOC107736887 coding downstream 781867 2744887 ~ 2752853 (+)
G143144 NA non-coding upstream 74237 1764761 ~ 1765095 (+)
G143140 NA non-coding upstream 75589 1763476 ~ 1763743 (+)
G143139 wdr34,LOC107736865,LOC107584613 non-coding upstream 76495 1762382 ~ 1762837 (+)
G142977 LOC107662880 non-coding upstream 592523 1215590 ~ 1246809 (+)
G142943 NA non-coding upstream 603177 1229548 ~ 1236155 (+)
LOC122326018 NA non-coding downstream 18903 1981923 ~ 1984090 (+)
G143290 NA non-coding downstream 109154 2072174 ~ 2072661 (+)
G143315 NA non-coding downstream 218052 2181072 ~ 2181602 (+)
G143339 NA non-coding downstream 372239 2335259 ~ 2335791 (+)
G143340 NA non-coding downstream 373761 2336781 ~ 2338470 (+)
LOC122326311 NA other upstream 610277 1227998 ~ 1229055 (+)
glrx glrx,LOC107661879,LOC107665229 other upstream 683190 1153104 ~ 1156142 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 783407 1050838 ~ 1055925 (+)
alpk2 LOC107600938,LOC107662700 other upstream 1033226 735722 ~ 806106 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other downstream 67084 2030104 ~ 2056679 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other downstream 270639 2233659 ~ 2237195 (+)
gnrh2 LOC107595723 other downstream 866094 2829114 ~ 2830356 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other downstream 1334970 3297990 ~ 3320013 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other downstream 1738409 3701429 ~ 3704397 (+)

Expression


Co-expression Network