stxbp1a (stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460)


Basic Information

Item Value
gene id stxbp1a
gene name stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2030104 ~ 2056679 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU211536
GCATTTAAGATTTTACATTAACACAGAATTTCTAATTGGTGGATTTGTGCAACCTGCACAATTTTGTCCAAGCATGAGGTCTATTAGAGATGAACAATGCATCAGAAGGACCTCTATGGAATTAATTTGCGGAATGACTTTTTTAAGTCGATTGAAGGAGGCCTGACATTTATTGAGTCTTCCATCACTGATTCGTCCAGCCAGAGCttccaaaaaaatcattttctttgtcGGGGTTCTAGGACGATATTTCTGAAACATCAAGATCTACAGATGGTGGAAATGGTTTTTAACCCTCTTTTGTCCCCATAAAGATTAACGGTGGTGAAAGAACGTGAGGTGCGGTGTGAGATTCATTCTGAGCGTGAAGCCACCTTTGTTCCTCCGCAGGTTCTACTCACACGCTCACCCCAACCAAATTTCTAATGGACCTGCATGCACCCGACTCCGAGAATCCACTAGGGTGTCCTTTGAGGACCCTGACCCCTCAGacgagtgagagagagaaagagaggaagggTGGGAGAGAGAAATCACACTCTGACAAAGTTCGACCCATATCACCGGCCCCACCCAGCTTCTGGACGCTCTCAAGGCCATGAACAAACCCGACGAGGAGCAGACAAGCTAAAATCACAACTTCCTCCTCCCCAACCCCATCGCCCAGTTACCCTCTCCCTCCCTTCATCCGTCGCCCTGTAAATCGCACCCGCTCCTATATAAATTGTGTATGCATCTTGcttgagagaaaaagaaaaaaaaaaaaaggtgattgGTGACAAGTTAAAAAGAATATtctataaatttatatatatttaaatatatatataatgttgaaataaaagaatCATTGCAAGTATTCTTCTGTTTTACAATGGATGCAAATGATTAGACTGTCAAACTGAGTTttcattttgccatttaaaaaccTGAAAGTACCAAATGTAATATTGTATGTTATGGAACCTGCTAGAATGCGTAAATGGTAGATCACTCTTTGCGTTTGTTCCTTATTTAActtggtgtgtgttttttcttttctttctgttatttGAATGGTTTAAAAGTGGTTGGGGGAGGGACTGGTTTGTATGCAAATAGACCAGTGAGGCAAAACGATGCATATCACTTCCTACGCTGAAGGCTAAGCTGCCGCCCAGTCGAGATGCTTGGGTTTAATTGTTGTCTCATTTTAGATGTGCATGCCATGGACGCTACTATGTGGCCATTTTGACATGTTTTCAAAcgcaagtaaaaaataaatacaaaaaacatgttaagaACGAAACAATGAGCATCTTCTGGGACTCCAGTGATGAAGAGGAAGGAGGCCAAAGGAGTAACAGATCAAAGCCTCAAGCCGTAAACGTGAAAGAGACACTGTACATAGATAGCGGACGTCACCCCTCCTTCAATCGCGATTCCCGGGAGCGTTTACTCTCCATCTCCTTTTCTTTTCACGTCTCCTTCTACAGAGACCTCATGATTTAGTGTGAAGAAGGCCGTTGCTTGCAGATGTTTAAGGAATTCAAAAAAAAGGGCCAGTTGTATTTCAGTATTGTATCTCGTCTTATCATTGGTTAGTAAACAATGTTTAACCGGGACATGCACTGAGTAGCGTGTTGTTGTATGCcatatgttactgttttttcGTCTCACTGTTGACTGGTGAAAATTTCTGACTGTGAAGTAGTAAAACTTTCCTTTGCCAATGTGAAGCCACTGTGTTTGTGACGTATTAGCTGTAGCTGTAGTGAtaaactggggaaaaaaaaaataataggtaAAATCTATCTTTCGTTTGTCCGTCCGATAGTTTCTTTCTGGTGCAATGTTATATCTTCCACTGGTGAATGGCTTTGCAACGAAACGCAACCCCCCTTTTTAATGTTTGGGTTTCAGTTTCCTCTTTACTCTGTTCTGGCAGAAAGGTTGTATATTGCACTACGCgttttctgtgatgcaaacGCTTCTATggttctctctcttcttttaaACGATTACCTTCATTTGGGTTTGCTGTTGTATAGCTGTGTCGACTGGATtgatttctattctatttatttttcagagaatATCAATAAATAAGAACGTAGTCTGTCTTAAACCTGTTGATCTTACTGGGATTCTATGTTTGCGAGTGTTGAAGCACAAACTAAAGTATACTTCATGTGTACCGATGTACTAAGGCTGTCTAATAAATTGGCTTCCATTACAAATATGCA
>XM_043221760.1
TGAAGTCACGGAGGGATTCACTTTCCGCGATTCAGTGCCTGCGCCCTCAGCCTCTGGCAGACGCGCTACGTTTAACGGCGCCCGGTGGCGCGAGCGCACGCGAGGGAGGGGCGGTTACGCAGTGACGAATCTCCGCAGTCAGCTGCTGTGAGTGCGCAGCACCGCTCTGCCAGAGACAGCaaagaggaggagagggaggAGAAGAAGATACAGCACACGGGCGAACACTCAGGAGCATCATGGCACCAATTGGATTAAAGGCGGTCGTTGGCGAAAAGATTATGAATGATGTCATCAAGAAGGTGAAGAAGAAGGGAGAGTGGAAGGCTTTGATTGTGGACCAGCTCAGCATGAGGATGCTGTCCTCTTGCTGCAAAATGACTGATATCATGACAGAGGCATCACCAGTAATTGTTGAAGACATTAATAAGCGAAGAGAGCCTCTCCCGTCACTGGAGGCCATTTACCTGATCACCCCTACTGAGAAGTCCGTGCAGACTCTCGTCAATGACTTCAAAGATCCCCATTCAGCGAAATATAAAGCGGCTCATGTGTTCTTCACTGACTcttGCCCGGCCCTGTTTAATGATGTGGTGAAGAGCCGTGCCTCCAAAACCATTAAAACCCTAACTGAGATCAACATCGCCTTCCTGCCCTATGAGTCCCAGgTGTTCTCTTTGGACAACCCTGATGCCTTCCAGAGTTTCTACAGCCCTCataagacacagctgaagaacCCTGTGATGGAGCGGTTGGCAGAGCAGCTGGCAACGCTGTGTGCCACACTGAAGGAGTACCCTGCCGTCCGATACCGAGGTGAGTATAAAGATAACGCCACTCTGGCTCAGTTGCTTCAGGACAAACTGGACGCCTACAAGGCAGATGATCCCACAATGGGGGAGGGTCCAGACAAGGCTCGCTCTCAGCTCATTATTCTGGACCGAGGTTTCGACCCAGTCTCTCCTGTCCTGCACGAGCTCACCTTTCAGGCTATGGCCTATGACCTGCTGCCCATCGAGAACGATGTCTACAAGTCTGAGACCAGTGGAATAGGAGACTCTCGTGAGAAGGAAGTGCTGCTGCATGAAGACGATGACCTCTGGGTGGCACTACGGCACAAACATATTGCTGAGGTCTCACAGGAGGTGACACGTTCCCTGAAGGAGTTTTCTGCTAGTAAACGGATGAATACTGGAGAGAAGACCACCATGAGGGATCTGTCTCAAATGCTAAAGAAGATGCCGCAGTACCAGAAAGAGCTCAGCAAGTACTCAACCCATCTGCAGTTGGCCGAGGACTGCATGAAGCACTACCAGGGAACCGTGGACAAGCTGTGCCGTGTAGAACAGGATCTCGCTATGGGAACAGACGCTGAGGGCGAAAAGATTAAAGACCCCATGAGGGCCATCGTGCCAATCTTGCTGGATGCCAACGTCAGCACCTACGACAAGATCCGCATCATCCTGCTCTACATTTTCCTCAAGAACGGGATCACAGAGGAGAACCATAACAAGCTGATTCAACACGCCCAGATCCCTCCTGAGGACAGTGAGATCATCACCAATATGGCTCATCTGGGCGTCCCAATCATCACGGATTCTACTCTCCGCAGAGGCAAGAAGCTGGATCGTAAGGAGCGTGTGAGCGAGCAGACCTATCAGCTTTCTCGCTGGACCCCACTCATCAAGGACATCATAGAGGATGCTATCGATGACAAGCTGGACACCAAACATTATCCGTACATCTCAACACGCTCGTCCTCTTCCTTCAGCACTTCTGCAGTCAGTGCTCGATATGGCCACTGGCACAAGAACAAAACCCCTGGAGAGTACCGTACGGGCCCTCGCATCATGGTCTTCATTATTTTGGGCGCGTCCTTTAGCGAGATGCGCTGTGCCTATGAGGTCACACAGGCTAATGGCAAATGGGAGGCCATCATTGGTTCGACCCATATCACCGGCCCCACCCAGCTTCTGGACGCTCTCAAGGCCATGAACAAACCCGACGAGGAGCAGACAAGCTAAAATCACAACTTCCTCCTCCCCAACCCCATCGCCCAGTTACCCTCTCCCTCCCTTCATCCGTCGCCCTGTAAATCGCACCCGCTCCTATATAAATTGTGTATGCATCTTGcttgagagaaaaagaaaaaaaaaaaaaggtgattgGTGACAAGTTAAAAAGAATATtctataaatttatatatatttaaatatatatataatgttgaaataaaagaatCATTGCAAGTATTCTTCTGTTTTACAATGGATGCAAATGATTAGACTGTCAAACTGAGTTttcattttgccatttaaaaaccTGAAAGTACCAAATGTAATATTGTATGTTATGGAACCTGCTAGAATGCGTAAATGGTAGATCACTCTTTGCGTTTGTTCCTTATTTAActtggtgtgtgttttttcttttctttctgttatttGAATGGTTTAAAAGTGGTTGGGGGAGGGACTGGTTTGTATGCAAATAGACCAGTGAGGCAAAACGATGCATATCACTTCCTACGCTGAAGGCTAAGCTGCCGCCCAGTCGAGATGCTTGGGTTTAATTGTTGTCTCATTTTAGATGTGCATGCCATGGACGCTACTATGTGGCCATTTTGACATGTTTTCAAAcgcaagtaaaaaataaatacaaaaaacatgttaagaACGAAACAATGAGCATCTTCTGGGACTCCAGTGATGAAGAGGAAGGAGGCCAAAGGAGTAACAGATCAAAGCCTCAAGCCGTAAACGTGAAAGAGACACTGTACATAGATAGCGGACGTCACCCCTCCTTCAATCGCGATTCCCGGGAGCGTTTACTCTCCATCTCCTTTTCTTTTCACGTCTCCTTCTACAGAGACCTCATGATTTAGTGTGAAGAAGGCCGTTGCTTGCAGATGTTTAAGGAATTCAAAAAAAAGGGCCAGTTGTATTTCAGTATTGTATCTCGTCTTATCATTGGTTAGTAAACAATGTTTAACCGGGACATGCACTGAGTAGCGTGTTGTTGTATGCcatatgttactgttttttcGTCTCACTGTTGACTGGTGAAAATTTCTGACTGTGAAGTAGTAAAACTTTCCTTTGCCAATGTGAAGCCACTGTGTTTGTGACGTATTAGCTGTAGCTGTAGTGAtaaactggggaaaaaaaaaataataggtaAAATCTATCTTTCGTTTGTCCGTCCGATAGTTTCTTTCTGGTGCAATGTTATATCTTCCACTGGTGAATGGCTTTGCAACGAAACGCAACCCCCCTTTTTAATGTTTGGGTTTCAGTTTCCTCTTTACTCTGTTCTGGCAGAAAGGTTGTATATTGCACTACGCgttttctgtgatgcaaacGCTTCTATggttctctctcttcttttaaACGATTACCTTCATTTGGGTTTGCTGTTGTATAGCTGTGTCGACTGGATtgatttctattctatttatttttcagagaatATCAATAAATAAGAACGTAGTCTGTCTTAAACCTGTTGATCTTACTGGGATTCTATGTTTGCGAGTGTTGAAGCACAAACTAAAGTATACTTCATGTGTACCGATGTACTAAGGCTGTCTAATAAATTGGCTTCCATTACAAA

Function

symbol description
stxbp1a Predicted to enable syntaxin-1 binding activity. Predicted to be involved in intracellular protein transport; neurotransmitter secretion; and vesicle docking involved in exocytosis. Predicted to act upstream of or within protein transport. Predicted to be active in plasma membrane and secretory granule. Is expressed in nervous system. Human ortholog(s) of this gene implicated in West syndrome and developmental and epileptic encephalopathy 4. Orthologous to human STXBP1 (syntaxin binding protein 1).
stxbp1 Enables syntaxin-1 binding activity. Involved in several processes, including SNARE complex assembly; platelet aggregation; and regulation of acrosomal vesicle exocytosis. Located in several cellular components, including cytosol; nucleoplasm; and platelet alpha granule. Implicated in West syndrome and developmental and epileptic encephalopathy 4.

NR:

description
syntaxin-binding protein 1 isoform X1

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process

KEGG:

id description
K15292 STXBP1, MUNC18-1; syntaxin-binding protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU211536 False 2225 lncRNA 0.40 2 2051632 2056679
XM_043221760.1 True 3612 mRNA 0.46 24 2030104 2056673

Neighbor

gene id symbol gene type direction distance location
slc31a2 LOC107661547 coding upstream 31057 1995787 ~ 1999047 (+)
LOC122326700 NA coding upstream 76878 1949736 ~ 1953226 (+)
zgc:113162 LOC107692271,LOC107584524,LOC107661621,LOC107736869 coding upstream 180619 1830684 ~ 1849485 (+)
LOC122326489 camkk2,LOC107739694,LOC107736868,LOC108437385 coding upstream 199952 1809407 ~ 1830152 (+)
snrpd3l snrpd3,smd3,LOC105014836,LOC106563120 coding upstream 221265 1807195 ~ 1808839 (+)
LOC122326937 NA coding downstream 223902 2280581 ~ 2287288 (+)
LOC122326565 LOC107579035 coding downstream 561556 2618235 ~ 2627353 (+)
LOC122326563 LOC107579035,LOC107736917 coding downstream 574417 2631096 ~ 2656760 (+)
smarcb1b smarcb1b,smarcb1,LOC107661349,LOC107736887 coding downstream 688208 2744887 ~ 2752853 (+)
chchd10 chchd10,LOC107736936,LOC107692329,LOC107737885,LOC107662830 coding downstream 725669 2782348 ~ 2784025 (+)
LOC122326018 NA non-coding upstream 46014 1981923 ~ 1984090 (+)
G143149 NA non-coding upstream 67084 1839332 ~ 1963020 (+)
G143153 NA non-coding upstream 85601 1873761 ~ 1944503 (+)
G143155 NA non-coding upstream 146574 1877671 ~ 1883530 (+)
G143144 NA non-coding upstream 265009 1764761 ~ 1765095 (+)
G143290 NA non-coding downstream 15495 2072174 ~ 2072661 (+)
G143315 NA non-coding downstream 124393 2181072 ~ 2181602 (+)
G143339 NA non-coding downstream 278580 2335259 ~ 2335791 (+)
G143340 NA non-coding downstream 280102 2336781 ~ 2338470 (+)
G143354 LOC107595722,LOC107662860,LOC107739708,LOC107548798 non-coding downstream 342393 2399072 ~ 2400069 (+)
LOC122326311 NA other upstream 801049 1227998 ~ 1229055 (+)
glrx glrx,LOC107661879,LOC107665229 other upstream 873962 1153104 ~ 1156142 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 974179 1050838 ~ 1055925 (+)
alpk2 LOC107600938,LOC107662700 other upstream 1223998 735722 ~ 806106 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other downstream 176980 2233659 ~ 2237195 (+)
gnrh2 LOC107595723 other downstream 772435 2829114 ~ 2830356 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other downstream 1241311 3297990 ~ 3320013 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other downstream 1644750 3701429 ~ 3704397 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other downstream 2050122 4106801 ~ 4213772 (+)

Expression


Co-expression Network