XLOC_006786 (zgc:153911)



Basic Information


Item Value
gene id XLOC_006786
gene name zgc:153911
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information


Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 35974362 ~ 35976986 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence


>TCONS_00013059
CGGGATCGGACCTCTGCTGTTGATCAGCTCGGCTTCACCCACATACAACTAAACAAAATCActgagttttttgttttgtttctggtaaTAGTGATTCAGGAGTGTTAAAGGATTTACTTCTTTCCTGCGGTCGTGGATTGTGATATGAACTTGAAGGTGTTCTGCTTTTTTTTCCTACTTCTTGAAGCCTCCTGTTTCATTGAATTTGAGATCTCTGTTCCCCGAAGTCCTGTCATTGGGTTTTACGGTGAGGAGCTGATCCTCCCTTGCACATTCCCTGTGGATTCTTCGTGGGATCTGAGCAGCACTGTTATCACATGGCAGCGAGGGCTGGATGTAGTTCACAGCTTCTACTACAGTCGGGATCAGCTGGACCGGCAGAATCCTCATTATGTCAGCCGCACCAGTCTGTTCATTCAGGAGATGCAGCGAGGAAACGCCTCTCTCAAACTGGACAAAGTGACTCAGAGGGATGCCGGTGTTTACACCTGCTCCATCAGCACAAACTCCGGCAGCCAGAAGAAGAGCTTTGCTGTAAATATTGCAGCGCTCTACTCTGAGCCTCGTCTGCAGTTCTCCATGTTGACGGATGGAGTCAATCTGCTGGTGACGTCAGATGGAGGATACCCTTCTCCAACACTGCAGTGGCTGATGGAGAACTCAGACATCACCAACCAGACTCAAACACACCTCAGACAGGACACAAGCACAGGACTTTACATCGTGTCCAGCTGGATAAAACTCTCTGACGTCTCAAATTCATCTTTGACATTTATTCTGCACAACAAACCGCTGGGGCAAGACATCAGAAGAGAGATCCAGCTTTCGTCAGatAAAATTGAAAAACAAGAAGAGAACAGATGCTCTGAATGCTTCATTTTGATCCCAGTTGCTCTGCTGCTGCTCGCGATGGTTTTATTGTTTGTATTCTTTatcaaaagaagaagaaaagcagAAAAGAGCAAACAAAGTTCCTCCAGTGAAACTAAAAGTCTGAGTGAAAATGTATGATTATGATGgttatgctgtttttttaatgatGATCATTTCCAGGACAGAATttagtattatatttattgttacatGGTTCAAGTTATTTTAAACCagtttttaacaaataaacactttatttgtgcTGTGATGATCCTTTCATGTTAAATACCATTTCAATGCATTATTCCACTGATCTTTATGTCAGATATCTGGTGTGTTTGTCACAGCTAAACTAACCAAATCTTCCTAGGTGCTAAACACTTTTAACAGAGCTAAAAATTTCATAAACAGAATTTGTCAGTCATATCATATTATGATGCACTGCTGATGTCCTGCTTAACAAGCATTATGTTTGAGACCATTTCCATTAGTGTTATACATTTTACTCTTGACTTTATGCactaaacagtatttttttacacACACCTGCTGGCAGGATCTTGTTGCTCCACAGTAACATTTTACAACgatatttattaaattagtttCTCTCTAAAAATGGAATTTGATTTGAATTCATGTAATTTATAACATGTAATTTTATACTGTGAACTAGTGTGTTAGTAGTACTTATGTTTGACTATGGGACCACTGTGTGCTGTTTAATATTTCAATTGTTTACATTTGCCTCCGTATCAAGTGAcatgtttactcatgtgatgctgaaataaaatatacatttgtataatA

Function


symbol description
zgc:153911 Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane.

GO:

id name namespace
GO:0001817 regulation of cytokine production biological_process
GO:0050776 regulation of immune response biological_process
GO:0050852 T cell receptor signaling pathway biological_process
GO:0009897 external side of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005102 signaling receptor binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061013-174 Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in external side of plasma membrane.

Ensembl:

ensembl_id ENSDARG00000002509

RNA


RNA id representative length rna type GC content exon number start site end site
TCONS_00013059 True 1683 mRNA 0.40 4 35974362 35976986

Neighbor


gene id symbol gene type direction distance location
XLOC_006785 BX510990.1 coding downstream 11896 35962350 ~ 35962466 (-)
XLOC_006784 NA coding downstream 48878 35925042 ~ 35925484 (-)
XLOC_006783 mycla coding downstream 66087 35904335 ~ 35908275 (-)
XLOC_006782 tacc3 coding downstream 82057 35880573 ~ 35892305 (-)
XLOC_006781 map3k4 coding downstream 129401 35787873 ~ 35844961 (-)
XLOC_006787 si:ch211-67f13.8 coding upstream 7011 35983997 ~ 35984530 (-)
XLOC_006788 si:ch211-67f13.8 coding upstream 7635 35984621 ~ 35985772 (-)
XLOC_006789 si:dkey-157l19.2 coding upstream 18252 35995238 ~ 36034582 (-)
XLOC_006790 lgmn coding upstream 60984 36037970 ~ 36050327 (-)
XLOC_006791 pcnx1 coding upstream 76999 36053985 ~ 36134401 (-)
XLOC_006471 BX537274.2 misc downstream 25709457 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 35148137 825904 ~ 826225 (-)
XLOC_006779 BX663524.1 non-coding downstream 381985 35592242 ~ 35592377 (-)
XLOC_006775 CU138575.1 non-coding downstream 603678 35370569 ~ 35370684 (-)
XLOC_006774 NA non-coding downstream 684925 35205297 ~ 35289437 (-)
XLOC_006797 CR361558.1 non-coding upstream 422274 36399260 ~ 36399375 (-)
XLOC_006804 BX927407.1 non-coding upstream 610784 36587770 ~ 36612159 (-)
XLOC_006814 NA non-coding upstream 1018647 36995633 ~ 36997760 (-)
XLOC_006815 NA non-coding upstream 1032826 37009812 ~ 37012236 (-)
XLOC_006817 NA non-coding upstream 1133226 37110212 ~ 37110536 (-)

Expression



Co-expression Network