G143354 (LOC107595722,LOC107662860,LOC107739708,LOC107548798)


Basic Information

Item Value
gene id G143354
gene name LOC107595722,LOC107662860,LOC107739708,LOC107548798
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2399072 ~ 2400069 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU211734
TGTCAACTCCAGTCAGGTTCTAATGTGATTGATTGGTGTATGATAATTTAATGCAACACATCAAATTTGCAAATCATGTGTCATAAAACATTCCTTTCAGTAGATGAGTATAAAACATGATTTgcagacaaaaataacaattacaacAAGATAAAGTGCCatctatttaacatttaaaacaattattaattttccaAAAGTGTGTTATTTAAGCTCATGGGCATCTTTCCCTTCTTCCAGCATGCATGTGATGGCCATTACGCAGGTCACGGCATATGGGTCACAGTTGGCGGCAGGACGGCGGTCCTCAAAGTAACCACATTTGTCCTGACCCACCTGACGAGGGATACGGATGCTGGCTCCGCGGTTAGCAACACCGGCTGAGAAATCGTGGATGCTGGAGGTCTCGTGGCGACCCGTGAGGCGACGTTTGTTATCTTCTCCACCGTGCGGGTCGTAGGCTTGAATGTGCTCTTTGTGACGCTTGCTCAGTTTCTCGATGTCTTTCTATGacttgtgagtgtgtgcgtgactCAGTACATACTCAATTCCTCCTTGTTCTCTCATTTGCACGGTGCTCACATTAACGTGGCAGCCGGTTCCGTTCCAATCCCCTGTCATGGGTTTTGGGTCCAGGGTGGCCACCACTCCAAAGTCTTCGCACACCCTGTGGAGCAGGAACCGTGCCATCCATAGCTGATCTCCCATCTCTATTCCTTCACATGGACCCACCTGGAACTCCCACTGCAGAGAGAGCAAATTATCCAGACTGGCCATCCATAACATGATGTCTAA

Function

NR:

description
PREDICTED: glutamine synthetase-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211734 True 795 lncRNA 0.47 2 2399072 2400069

Neighbor

gene id symbol gene type direction distance location
LOC122326937 NA coding upstream 111784 2280581 ~ 2287288 (+)
slc31a2 LOC107661547 coding upstream 400025 1995787 ~ 1999047 (+)
LOC122326700 NA coding upstream 445846 1949736 ~ 1953226 (+)
zgc:113162 LOC107692271,LOC107584524,LOC107661621,LOC107736869 coding upstream 549587 1830684 ~ 1849485 (+)
LOC122326489 camkk2,LOC107739694,LOC107736868,LOC108437385 coding upstream 568920 1809407 ~ 1830152 (+)
LOC122326565 LOC107579035 coding downstream 218166 2618235 ~ 2627353 (+)
LOC122326563 LOC107579035,LOC107736917 coding downstream 231027 2631096 ~ 2656760 (+)
smarcb1b smarcb1b,smarcb1,LOC107661349,LOC107736887 coding downstream 344818 2744887 ~ 2752853 (+)
chchd10 chchd10,LOC107736936,LOC107692329,LOC107737885,LOC107662830 coding downstream 382279 2782348 ~ 2784025 (+)
ddt ddt,LOC107736937,LOC107662822,LOC107737884,LOC107692330 coding downstream 384404 2784473 ~ 2786135 (+)
G143340 NA non-coding upstream 60602 2336781 ~ 2338470 (+)
G143339 NA non-coding upstream 63281 2335259 ~ 2335791 (+)
G143315 NA non-coding upstream 217470 2181072 ~ 2181602 (+)
G143290 NA non-coding upstream 326411 2072174 ~ 2072661 (+)
LOC122326018 NA non-coding upstream 414982 1981923 ~ 1984090 (+)
G143356 NA non-coding downstream 2678 2402747 ~ 2404090 (+)
G143349 NA non-coding downstream 26420 2426489 ~ 2490200 (+)
G143385 NA non-coding downstream 87334 2487403 ~ 2543307 (+)
G143465 NA non-coding downstream 400661 2800730 ~ 2801348 (+)
G143491 NA non-coding downstream 462703 2862772 ~ 2863017 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other upstream 161877 2233659 ~ 2237195 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other upstream 342393 2030104 ~ 2056679 (+)
LOC122326311 NA other upstream 1170017 1227998 ~ 1229055 (+)
glrx glrx,LOC107661879,LOC107665229 other upstream 1242930 1153104 ~ 1156142 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 1343147 1050838 ~ 1055925 (+)
gnrh2 LOC107595723 other downstream 429045 2829114 ~ 2830356 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other downstream 897921 3297990 ~ 3320013 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other downstream 1301360 3701429 ~ 3704397 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other downstream 1706732 4106801 ~ 4213772 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other downstream 1732367 4132436 ~ 4386212 (+)

Expression


Co-expression Network