gnrh2 (LOC107595723)


Basic Information

Item Value
gene id gnrh2
gene name LOC107595723
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 2829114 ~ 2830356 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU211940
GGCAGACGTATCTCAGAAGCTCACTGAAGCGTTCGCAAGGCAAAGGAGACCATATCAGGATTACCAAGACCAGGACTTCAGAGTAGAGAAACTACTAAAGAAGATCCTTCAAGAGGAGACGTGCCAGTAGATACAAGTTATGGTGCACATCTGCAGGCTGTTTGTGGTGATGGGGATGTTGCTGTGTCTAAGTGCCCAGTTTGCCAGCTCTCAGCACTGGTCTCACGGCTGGTATCCCGGAGGAAAGCGAGAGATAGACGTTTACGATACCTCAGAGGTTTCAGAGGAAATTAAACTCTGCGAGGCAGGAAAGTGCAGCTACCTGAGACCCAAGGGAAGAAACATTCTCAAGACAATACtgCTGGATGCCCTCATACGGGATTTCCAAAAGAGAAAGTGACACCAAGATGACTCAACAGCCTGTGTCCAAAGAAAAAACCTTTTCCAGCAAACACATTCGGCCTGCATTTCCatctaaattattatatatatatataattattttgttattctgtgattttattttttacttttttgtacgTTCTGCATTGTGTTCTGTTCTCATAACCGATGTGAGTGAACCTTTACTGCCGGCACTATGTAACCATTTGCAGCAGTTCATACAATAAAGgctttattttggtattttg
>XM_043221449.1
GGCAGACGTATCTCAGAAGCTCACTGAAGCGTTCGCAAGGCAAAGGAGACCATATCAGGATTACCAAGACCAGGACTTCAGAGTAGAGAAACTACTAAAGAAGATCCTTCAAGAGGAGACGTGCCAGTAGATACAAGTTATGGTGCACATCTGCAGGCTGTTTGTGGTGATGGGGATGTTGCTGTGTCTAAGTGCCCAGTTTGCCAGCTCTCAGCACTGGTCTCACGGCTGGTATCCCGGAGGAAAGCGAGAGATAGACGTTTACGATACCTCAGAGGTTTCAGAGGAAATTAAACTCTGCGAGGCAGGAAAGTGCAGCTACCTGAGACCCAAGGGAAGAAACATTCTCAAGACAATACtgCTGGATGCCCTCATACGGGATTTCCAAAAGAGAAAGTGACACCAAGATGACTCAACAGCCTGTGTCCAAAGAAAAAACCTTTTCCAGCAAACACATTCGGCCTGCATTTCCatctaaattattatatatatatataattattttgttattctgtgattttattttttacttttttgtacgTTCTGCATTGTGTTCTGTTCTCATAACCGATGTGAGTGAACCTTTACTGCCGGCACTATGTAACCATTTGCAGCAGTTCATACAATAAAGgctttattttggtattttg
>XM_043221450.1
GGCAGACGTATCTCAGAAGCTCACTGAAGCGTTCGCAAGGCAAAGGAGACCATATCAGGATTACCAAGACCAGGACTTCAGAGTAGAGAAACTACTAAAGAAGATCCTTCAAGAGGAGACGTGCCAGTAGATACAAGGTCTCTGTTCTCTTCCCTCAGTTATGGTGCACATCTGCAGGCTGTTTGTGGTGATGGGGATGTTGCTGTGTCTAAGTGCCCAGTTTGCCAGCTCTCAGCACTGGTCTCACGGCTGGTATCCCGGAGGAAAGCGAGAGATAGACGTTTACGATACCTCAGAGGTTTCAGAGGAAATTAAACTCTGCGAGGCAGGAAAGTGCAGCTACCTGAGACCCAAGGGAAGAAACATTCTCAAGACAATACtgCTGGATGCCCTCATACGGGATTTCCAAAAGAGAAAGTGACACCAAGATGACTCAACAGCCTGTGTCCAAAGAAAAAACCTTTTCCAGCAAACACATTCGGCCTGCATTTCCatctaaattattatatatatatataattattttgttattctgtgattttattttttacttttttgtacgTTCTGCATTGTGTTCTGTTCTCATAACCGATGTGAGTGAACCTTTACTGCCGGCACTATGTAACCATTTGCAGCAGTTCATACAATAAAGgctttattttggtattttg

Function

NR:

description
progonadoliberin-2

GO:

id name namespace
GO:0043010 camera-type eye development biological_process
GO:0007420 brain development biological_process
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211940 False 650 lncRNA 0.43 4 2829114 2830356
XM_043221449.1 False 650 mRNA 0.43 4 2829114 2830356
XM_043221450.1 True 671 mRNA 0.43 4 2829114 2830356

Neighbor

gene id symbol gene type direction distance location
ptpra ptpra,LOC107736890,LOC107737868 coding upstream 2205 2802146 ~ 2826909 (+)
idh3b idh3b,LOC107737870,LOC107736889,LOC107548787 coding upstream 28614 2793688 ~ 2800500 (+)
p2rx4a p2rx4,p2rx4a,LOC107737869 coding upstream 35569 2789507 ~ 2793545 (+)
gstt1b LOC107548781,LOC107661340,LOC107595683,LOC107737872 coding upstream 40021 2786644 ~ 2789093 (+)
ddt ddt,LOC107736937,LOC107662822,LOC107737884,LOC107692330 coding upstream 42979 2784473 ~ 2786135 (+)
gcnt4b.2 LOC107737880,LOC107595710,LOC107662521,LOC107733381,LOC107692321,LOC107736920,LOC107548763,LOC107692322 coding downstream 1395 2831751 ~ 2837249 (+)
LOC122326157 LOC107736921,LOC107595711,LOC107548780,LOC107737879,LOC107692322,LOC107733381,LOC107548763,LOC107595710 coding downstream 12349 2842705 ~ 2845216 (+)
fam169ab fam169ab,LOC107692296,LOC107548785,LOC107736892,LOC107737867,LOC107661277 coding downstream 15424 2845780 ~ 2861350 (+)
trnaa-ugc_120 NA coding downstream 116496 2946852 ~ 2946923 (+)
LOC122326345 NA coding downstream 124423 2954779 ~ 2956580 (+)
G143465 NA non-coding upstream 27766 2800730 ~ 2801348 (+)
G143385 NA non-coding upstream 285807 2487403 ~ 2543307 (+)
G143349 NA non-coding upstream 338914 2426489 ~ 2490200 (+)
G143356 NA non-coding upstream 425024 2402747 ~ 2404090 (+)
G143354 LOC107595722,LOC107662860,LOC107739708,LOC107548798 non-coding upstream 429045 2399072 ~ 2400069 (+)
G143491 NA non-coding downstream 32416 2862772 ~ 2863017 (+)
G143509 NA non-coding downstream 99906 2930262 ~ 2937617 (+)
G143578 NA non-coding downstream 484821 3315177 ~ 3315473 (+)
LOC122326852 NA non-coding downstream 505905 3336261 ~ 3336689 (+)
G143590 NA non-coding downstream 658155 3488511 ~ 3492587 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other upstream 591919 2233659 ~ 2237195 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other upstream 772435 2030104 ~ 2056679 (+)
LOC122326311 NA other upstream 1600059 1227998 ~ 1229055 (+)
glrx glrx,LOC107661879,LOC107665229 other upstream 1672972 1153104 ~ 1156142 (+)
entpd2b entpd2b,LOC107662923,LOC107580497,LOC107736658 other upstream 1773189 1050838 ~ 1055925 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other downstream 467634 3297990 ~ 3320013 (+)
G143650 barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696 other downstream 871073 3701429 ~ 3704397 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other downstream 1276445 4106801 ~ 4213772 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other downstream 1302080 4132436 ~ 4386212 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other downstream 1681570 4511926 ~ 4524180 (+)

Expression


Co-expression Network