G143650 (barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696)


Basic Information

Item Value
gene id G143650
gene name barhl1b,barhl1,LOC107556939,LOC100712077,LOC102792687,LOC107708351,LOC107595696
gene type unknown
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 3701429 ~ 3704397 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU212191
TTAgcacatttataaaagtaattctCCTTGCTTAAAGACCACCCTCCCCCGCACATCCAGCGGTTTTAAGAGTTTTCAAGAAGTTAAGCACACCGGGGTGGGGGGGCACGAACGAAAATCATCTGGAGTTACGAGAATCATTACTTCACAAATCATTATTCTCAATATACAGCTTCACCAGAAAGAATGACAAGATATTTCAACGGCTTTATACAGAGTTATTGCACAATGCCTGGGCGAACACTTTGCGCGCCGTCTCCTTTCAGACGCCTTATTGATCGCACGTGATCTGAAACGAGGACTTGGCGTTTTCCCGTCGACATCAAAGTGACACTGCTGGCAGTTGCGCGGGAATATAGAAACgaaaaaagcagcacaaaaaTAATCGATTGATAATCGATTAATAATCCATCTCGTCCGATCCACCTGTTCAGGCGTAGCACTCCGCGCCATTCAACTGTTTGTCAAACAGAAAGGCGACGCTTCTTCATTTAAAGTTGCTTTTTTCAGTCTGTAGACGTGTCGGGTTTTAATGTGCTGCTCAAGTCAGTCTCACCTGTTAACTTAAGGCTTGGAAATATgatacaaaaagagaaaaatcgaGATCTGTCTTTcgacataaaacaaaatattcttaTTTACACCTCTTTTCCTTTGTACATTTTAGAGGGTCACTACAAAGCCCGCGATTTATGACCTGGATTTCATCTCAggataattaaatatgaatctaCCATTTAAATATTCTTTGCGTCAGGGGATGCACCAACAATTAACAACCGTAATATCGactagttaaaataataataataataataataataataataataataataataataataataataatttgcaaaaCGAAATGTCCCTGTAGAATCAAGTCCCGTTATTAGTGCGTTCAGTATATAAcggtctgtgtttgtttcctccagatttaacatttaaggtaaataaaaaatataaacataagttacaaaaaaagataagtaaaataaatatttaaataaagtttaaaaatgtctctAATCACTTTTGCGTCCGTTTGTTTTTGTGGCTTCGTAAAATTTCTCGAATATTTTGTCACcagaaaaacaaatttttgtttttttttttttttttttttttttttttttttgtgatggtgGAGTTCAAAGCTGCCATGTACTGCAAACGAGTCCGAATCGCGCCGTTCATCGCGGTGGTGTCGGTCTGGGTAACACACCGGAGAGGGGGGGCAGAGGCGGCGGCGGCTCGTTGGCGCCCTGGAGACCGTGCAGAAGAATCCGGGGAACGAGAGGACGCTGCAGCGCCGGCGGGGGCGCCGAAGGTCCCCTGTATAAGTAGAGCGCCGCTCCGGGGTCCAGGTTCGACACCAGGCTTTGAGGGTAGAAATACGGCGAAGGGAACATCCTTTGCAGCGCGGAATAGTTTCCAGCCTCCGCTAACAATTCCAGTCCGACCGCCGTTTGCCTCTTCCACTtggtcctttttttttccccCCTCCTGTTCTGGTACCAGGTTTTGACCTGCGTGTCGGTCAGGTTGAGAGAGGCTGCCAGCTCCATCCTGTCCTGCACGCTCAGATACTTCTGACGCTCGAAACTGCGCTCCAGCTGGGCGAGCTGATGGTCAGTGAAGGCGGTCCGCGCTTTCCGTGGCTTCTTCAGGCGAACCTGCGGGCTGTCTCTGCTGCTCGAGATCTCCCTGTCGCCCTCCTCCTTCACTGAAACATCACATTGAACGAAAGGGCACTGGTTATCGCGAGTTAGTTAGCCCAAGCGTTTCAGCAGACCCTGCTTTGGCAAGTTATCACTAGTTCTGGTGTCAAAGGTTTCCGCGCGTCCTCTGATGGTCCCGCGCGCGCGCTTGTAACCCTGTCAtgcatttttcagattt
>TU212192
TTAgcacatttataaaagtaattctCCTTGCTTAAAGACCACCCTCCCCCGCACATCCAGCGGTTTTAAGAGTTTTCAAGAAGTTAAGCACACCGGGGTGGGGGGGCACGAACGAAAATCATCTGGAGTTACGAGAATCATTACTTCACAAATCATTATTCTCAATATACAGCTTCACCAGAAAGAATGACAAGATATTTCAACGGCTTTATACAGAGTTATTGCACAATGCCTGGGCGAACACTTTGCGCGCCGTCTCCTTTCAGACGCCTTATTGATCGCACGTGATCTGAAACGAGGACTTGGCGTTTTCCCGTCGACATCAAAGTGACACTGCTGGCAGTTGCGCGGGAATATAGAAACgaaaaaagcagcacaaaaaTAATCGATTGATAATCGATTAATAATCCATCTCGTCCGATCCACCTGTTCAGGCGTAGCACTCCGCGCCATTCAACTGTTTGTCAAACAGAAAGGCGACGCTTCTTCATTTAAAGTTGCTTTTTTCAGTCTGTAGACGTGTCGGGTTTTAATGTGCTGCTCAAGTCAGTCTCACCTGTTAACTTAAGGCTTGGAAATATgatacaaaaagagaaaaatcgaGATCTGTCTTTcgacataaaacaaaatattcttaTTTACACCTCTTTTCCTTTGTACATTTTAGAGGGTCACTACAAAGCCCGCGATTTATGACCTGGATTTCATCTCAggataattaaatatgaatctaCCATTTAAATATTCTTTGCGTCAGGGGATGCACCAACAATTAACAACCGTAATATCGactagttaaaataataataataataataataataatttgcaaaaCGAAATGTCCCTGTAGAATCAAGTCCCGTTATTAGTGCGTTCAGTATATAAcggtctgtgtttgtttcctccagatttaacatttaaggtaaataaaaaatataaacataagttacaaaaaaagataagtaaaataaatatttaaataaagtttaaaaatgtctctAATCACTTTTGCGTCCGTTTGTTTTTGTGGCTTCGTAAAATTTCTCGAATATTTTGTCACcagaaaaacaaatttttgtttttttttttttttttttttttttttttttttgtgatggtgGAGTTCAAAGCTGCCATGTACTGCAAACGAGTCCGAATCGCGCCGTTCATCGCGGTGGTGTCGGTCTGGGTAACACACCGGAGAGGGGGGGCAGAGGCGGCGGCGGCTCGTTGGCGCCCTGGAGACCGTGCAGAAGAATCCGGGGAACGAGAGGACGCTGCAGCGCCGGCGGGGGCGCCGAAGGTCCCCTGTATAAGTAGAGCGCCGCTCCGGGGTCCAGGTTCGACACCAGGCTTTGAGGGTAGAAATACGGCGAAGGGAACATCCTTTGCAGCGCGGAATAGTTTCCAGCCTCCGCTAACAATTCCAGTCCGACCGCCGTTTGCCTCTTCCACTtggtcctttttttttccccCCTCCTGTTCTGGTACCAGGTTTTGACCTGCGTGTCGGTCAGGTTGAGAGAGGCTGCCAGCTCCATCCTGTCCTGCACGCTCAGATACTTCTGACGCTCGAAACTGCGCTCCAGCTGGGCGAGCTGATGGTCAGTGAAGGCGGTCCGCGCTTTCCGTGGCTTCTTCAGGCGAACCTGCGGGCTGTCTCTGCTGCTCGAGATCTCCCTGTCGCCCTCCTCCTTCACTGAAACATCACATTGAACGAAAGGGCACTGGTTATCGCGAGTTAGTTAGCCCAAGCGTTTCAGCAGACCCTGCTTTGGCAAGTTATCACTAGTTCTGGTGTCAAAGGTTTCCGCGCGTCCTCTGATGGTCCCGCGCGCGCGCTTGTAACCCTGTCAtgcatttttcagattt
>TU212193
TTAgcacatttataaaagtaattctCCTTGCTTAAAGACCACCCTCCCCCGCACATCCAGCGGTTTTAAGAGTTTTCAAGAAGTTAAGCACACCGGGGTGGGGGGGCACGAACGAAAATCATCTGGAGTTACGAGAATCATTACTTCACAAATCATTATTCTCAATATACAGCTTCACCAGAAAGAATGACAAGATATTTCAACGGCTTTATACAGAGTTATTGCACAATGCCTGGGCGAACACTTTGCGCGCCGTCTCCTTTCAGACGCCTTATTGATCGCACGTGATCTGAAACGAGGACTTGGCGTTTTCCCGTCGACATCAAAGTGACACTGCTGGCAGTTGCGCGGGAATATAGAAACgaaaaaagcagcacaaaaaTAATCGATTGATAATCGATTAATAATCCATCTCGTCCGATCCACCTGTTCAGGCGTAGCACTCCGCGCCATTCAACTGTTTGTCAAACAGAAAGGCGACGCTTCTTCATTTAAAGTTGCTTTTTTCAGTCTGTAGACGTGTCGGGTTTTAATGTGCTGCTCAAGTCAGTCTCACCTGTTAACTTAAGGCTTGGAAATATgatacaaaaagagaaaaatcgaGATCTGTCTTTcgacataaaacaaaatattcttaTTTACACCTCTTTTCCTTTGTACATTTTAGAGGGTCACTACAAAGCCCGCGATTTATGACCTGGATTTCATCTCAggataattaaatatgaatctaCCATTTAAATATTCTTTGCGTCAGGGGATGCACCAACAATTAACAACCGTAATATCGactagttaaaataataataataataataataataatttgcaaaaCGAAATGTCCCTGTAGAATCAAGTCCCGTTATTAGTGCGTTCAGTATATAAcggtctgtgtttgtttcctccagatttaacatttaaggtaaataaaaaatataaacataagttacaaaaaaagataagtaaaataaatatttaaataaagtttaaaaatgtctctAATCACTTTTGCGTCCGTTTGTTTTTGTGGCTTCGTAAAATTTCTCGAATATTTTGTCACcagaaaaacaaatttttgtttttttttttttttttttttttttttttttttgtgatggtgGAGTTCAAAGCTGCCATGTACTGCAAACGAGTCCGAATCGCGCCGTTCATCGCGGTGGTGTCGGTCTGGGTAACACACCGGAGAGGGGGGGCAGAGGCGGCGGCGGCTCGTTGGCGCCCTGGAGACCGTGCAGAAGAATCCGGGGAACGAGAGGACGCTGCAGCGCCGGCGGGGGCGCCGAAGGTCCCCTGTATAAGTAGAGCGCCGCTCCGGGGTCCAGGTTCGACACCAGGCTTTGAGGGTAGAAATACGGCGAAGGGAACATCCTTTGCAGCGCGGAATAGTTTCCAGCCTCCGCTAACAATTCCAGTCCGACCGCCGTTTGCCTCTTCCACTtggtcctttttttttccccccaagaCGAAAAAGAATGATGttagtatataaaaattaaaattgcaattattcTACGACTAGTGTTTTATGTTCTGATcgtaaaagcaaaaagaaaaaaaaaaatcatctagtGTGTGTGCTGTCTAACATGCTTATTCCCAAGCGAAAGAGTTCAGAGAAATAACAACTCAATCCTCCGTTACTTTGCCTtctgtttataattatttgcataaaaatcattttttaaccCCACAATGTGGTTTACGTTAAGATGGGACATCGTTAGAGCTTTGTCACTTTATAATTAAAGATCAAAATAGTCCCATTGCTCGTTTCCTTCATATTGCAATTCGTACAgcctaattaatattttacgtGTAAGTGACAAAGCTCTGATGATGTACTAGTTTGACGTAAATAATACTGGATTGTGACATTAACTGTGCGGATGATATAAACAACATAGTTACACACATAGTGTAAAAAGCAGGCAGCAAATGTTACAgatatttcagtaattttgtttCATGGAGGACGCATGCAACATTCgtaaataaaatgctgtatactccttataattatttttttattttgccacaAAATTAGATGCTGCGAACACAGCtagaaaatatgcaaataaaccacttttaaatgcagtatTGCTATGCACGGCAAAAATGAACTTATAAAATGACATGGATGCACAGAATATCTGCCATTTCATTTCTGCAATTTCCCCCCCTTATTTAATGCCGCTGGGATGTACTCAAGCATTTGTTTCCAGCTGACCACATGCTCACCTCCTGTTCTGGTACCAGGTTTTGACCTGCGTGTCGGTCAGGTTGAGAGAGGCTGCCAGCTCCATCCTGTCCTGCACGCTCAGATACTTCTGACGCTCGAAACTGCGCTCCAGCTGGGCGAGCTGATGGTCAGTGAAGGCGGTCCGCGCTTTCCGTGGCTTCTTCAGGCGAACCTGCGGGCTGTCTCTGCTGCTCGAGATCTCCCTGTCGCCCTCCTCCTTCACTGAAACATCACATTGAACGAAAGGGCACTGGTTATCGCGAGTTAGTTAGCCCAAGCGTTTCAGCAGACCCTGCTTTGGCAAGTTATCACTAGTTCTGGTGTCAAAGGTTTCCGCGCGTCCTCTGATGGTCCCGCGCGCGCGCTTGTAACCCTGTCAtgcatttttcagattt

Function

symbol description
barhl1b Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in brain; neural plate; and retina. Orthologous to human BARHL1 (BarH like homeobox 1).
barhl1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including negative regulation of neuron apoptotic process; nervous system development; and sensory perception of sound. Predicted to be part of chromatin. Predicted to be active in nucleus. Biomarker of Alzheimer's disease; high grade glioma; and triple-receptor negative breast cancer.

NR:

description
PREDICTED: barH-like 1 homeobox protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212191 False 1902 TUCP 0.44 2 3701429 3704397
TU212192 False 1872 TUCP 0.45 3 3701429 3704397
TU212193 True 2652 TUCP 0.42 3 3701429 3704397

Neighbor

gene id symbol gene type direction distance location
tsc1b tsc1,tsc1b,LOC107595695,LOC107556942 coding upstream 67254 3617039 ~ 3634175 (+)
trnam-cau_115 NA coding upstream 86198 3615160 ~ 3615231 (+)
bcr bcr,LOC107595694,LOC107679847,LOC107556943,LOC105889081,LOC105014833,LOC106566295 coding upstream 98949 3544243 ~ 3602480 (+)
atp2a2b atp2a2b,atp2a2,LOC107708347,LOC107556944,LOC108444117 coding upstream 158691 3514033 ~ 3542738 (+)
arpc3 arpc3,LOC107737855,LOC107707141 coding upstream 195842 3503222 ~ 3505587 (+)
stom stom,LOC107741953,LOC107556938,LOC107708355 coding downstream 32984 3737381 ~ 3748407 (+)
rxraa rxraa,rxra,LOC107708356,LOC107679846,LOC107556936,LOC107686886,LOC107573462 coding downstream 82362 3786759 ~ 3918707 (+)
brd3a LOC107708359,LOC107686882,LOC107573464,LOC107741956 coding downstream 232981 3937378 ~ 3945807 (+)
vav2 vav2,LOC107661185,LOC107722824,LOC107684912 coding downstream 242669 3947066 ~ 4074419 (+)
stx2a LOC107708345,LOC107565383,LOC107661188,LOC107566207,LOC107722811,LOC107684913 coding downstream 398509 4102906 ~ 4106152 (+)
G143638 NA non-coding upstream 91379 3608919 ~ 3610050 (+)
G143590 NA non-coding upstream 208842 3488511 ~ 3492587 (+)
LOC122326852 NA non-coding upstream 364740 3336261 ~ 3336689 (+)
G143578 NA non-coding upstream 385956 3315177 ~ 3315473 (+)
G143509 NA non-coding upstream 763812 2930262 ~ 2937617 (+)
G143656 NA non-coding downstream 47202 3751599 ~ 3752198 (+)
LOC122326834 NA non-coding downstream 58935 3763332 ~ 3769556 (+)
G143664 NA non-coding downstream 99061 3803458 ~ 3803769 (+)
LOC122326258 NA non-coding downstream 215336 3919733 ~ 3921719 (+)
G143717 NA non-coding downstream 371130 4075527 ~ 4086526 (+)
LOC122326950 ehmt2,LOC107661424,LOC107739706,LOC107706570,LOC107566632,LOC107751678,LOC107694038,LOC107694747,LOC107557450 other upstream 381416 3297990 ~ 3320013 (+)
gnrh2 LOC107595723 other upstream 871073 2829114 ~ 2830356 (+)
G143321 LOC107739705,LOC107661415,LOC107736881,LOC107692311,LOC107548771 other upstream 1464234 2233659 ~ 2237195 (+)
stxbp1a stxbp1a,stxbp1,LOC107661518,LOC107736879,LOC108437460 other upstream 1644750 2030104 ~ 2056679 (+)
LOC122326311 NA other upstream 2472374 1227998 ~ 1229055 (+)
G143725 si:ch73-287m6.1,LOC107565381,LOC107708362 other downstream 402404 4106801 ~ 4213772 (+)
G143726 si:dkey-112m2.1,LOC107661187,LOC107708339,LOC107565378,LOC107684910,LOC107566201,LOC108437247 other downstream 428039 4132436 ~ 4386212 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other downstream 807529 4511926 ~ 4524180 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other downstream 1000760 4705157 ~ 4709441 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other downstream 1026206 4730603 ~ 4745266 (+)

Expression


Co-expression Network