CI01000001_12814416_12815426 (IRAK1BP1)


Basic Information

Item Value
gene id CI01000001_12814416_12815426
gene name IRAK1BP1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 12814336 ~ 12815444 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_12814416_12815426.mRNA
GTATAAAAAGCGACTACAACAACATTTCCCGACATGCACTGAACAAGTTGCCATAGCGCCACGTTGGTTTACCAACAAATATGGCGCACAGCCCGTCTCGTGTCTTTGCTGCAGTTTCAACGACTGCTGGTGATGTTTACCGAGACGAAAACGAGTCGGTGTTCAATCGGGGCCGCAAGCAAACACCTTTACACACTCAAAGCAACGTAAGAGTGGTTCAGGTGACGGGCTGTGCGGAGTTATCGTGTCCTCCGGACCGCGCGACCGTTACAATCAGCGTCAAAAACAGTAAAGAAAATGTTAACGACGTGACTAACAGCGTTACGCGAAGACTGGAATACATACTACAGACTGCAAGACAACATGATGTCAAGGAGGAAAACATCACTGTGGCCAAGCATTTACAAAGAGAGGAGGAGCTCTTCCACATGCAAGCCGAGGTGCTTCTTGTGTTTTCAGACTTTGAGAAGATGCAGAGTGCACGCTCAGTTTTGATTGAAAAACTAGACAAAAGCGTGTGTGTTGGTGACCCTTACTACAGTCACAGTGCTGAAAGCCTCAATTTGTTAAGGCGGCGAGTATGTTTGGAAGCTGTGGACAACGCTCGGCTAAAAGCCAGTGAGGCGTGTGGCATTCTGGGACAAGCTCTGGGACGCCCGCTGCTTGTACGCGAGGAGGAATCACAAGAGTGGACCAGCGGCCAGCATGAAGTCACTGGCTCTCCTCTAACACTACATCAGAGGACTGGGGTTACATTAGTCTCTGCCTCGTCACGTGTGTTTGTGACCTTTGAATTGCGACCAAAGGACAGCAACAGGAGGAAATTTTGAAGTTTTTGTTTAGCAATA

Function

symbol description
irak1bp1 Predicted to be involved in I-kappaB kinase/NF-kappaB signaling. Predicted to act upstream of or within immune response. Predicted to be located in cytoplasm; membrane; and nucleus. Predicted to be integral component of membrane. Orthologous to human IRAK1BP1 (interleukin 1 receptor associated kinase 1 binding protein 1).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_12814416_12815426.mRNA True 848 mRNA 0.49 4 12814336 12815444

Neighbor

gene id symbol gene type direction distance location
CI01000001_12718151_12726821 TBX18 coding upstream 87002 12717924 ~ 12727334 (+)
CI01000001_12657571_12666609 NA coding upstream 146957 12657571 ~ 12667379 (+)
CI01000001_12633655_12648702 NA coding upstream 165220 12633198 ~ 12649116 (+)
CI01000001_12602382_12613489 CABLES2A coding upstream 200398 12601961 ~ 12613938 (+)
CI01000001_12580225_12599311 NA coding upstream 214749 12579974 ~ 12599587 (+)
CI01000001_12873759_12874041 NA coding downstream 58315 12873448 ~ 12874215 (+)
CI01000001_12912442_12919516 SH3BGRL2 coding downstream 96170 12911614 ~ 12919991 (+)
CI01000001_12926362_12928572 RPS12, RGD1561102, RPS12-PS2, RPS12P4, GM4925, RPS12.S coding downstream 109970 12925414 ~ 12928579 (+)
CI01000001_12991367_12993048 NA coding downstream 175832 12991276 ~ 12993443 (+)
CI01000001_13002416_13005974 NA coding downstream 186770 13002214 ~ 13006033 (+)
G19783 NA non-coding upstream 3625 12799634 ~ 12810711 (+)
G19756 NA non-coding upstream 68028 12745990 ~ 12746308 (+)
G19718 NA non-coding upstream 236411 12577514 ~ 12577925 (+)
G19717 NA non-coding upstream 236917 12577205 ~ 12577419 (+)
G19704 NA non-coding upstream 258872 12555099 ~ 12555464 (+)
G19792 NA non-coding downstream 6162 12821606 ~ 12826051 (+)
G19796 NA non-coding downstream 16464 12831908 ~ 12835161 (+)
G19769 NA non-coding downstream 59366 12874810 ~ 12877091 (+)
G19813 NA non-coding downstream 68339 12883783 ~ 12883989 (+)
G19758 NA non-coding downstream 105561 12921005 ~ 12924201 (+)
G19395 NA other upstream 1132519 11681322 ~ 11681817 (+)
G19314 NA other upstream 1255663 11501194 ~ 11558673 (+)
G19039 NA other upstream 1960353 10850924 ~ 10853983 (+)
CI01000001_10538498_10539667 RPS26 other upstream 2274490 10538388 ~ 10539846 (+)
G18937 NA other upstream 2337947 10474984 ~ 10476389 (+)
CI01000001_13514115_13517063 NA other downstream 697960 13514115 ~ 13517063 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location