G143990 (LOC107589256,LOC107706512,LOC107681141,LOC107708519)


Basic Information

Item Value
gene id G143990
gene name LOC107589256,LOC107706512,LOC107681141,LOC107708519
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5366192 ~ 5374922 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU212722
GCTCTTGTCCGCCAGGGGGCTGATGCTGTTGTTGTTGACAGTCTGTTTAGGGTAGGCCTTGTCATTATTCATGGTGACCGAAGGAGGACTGGTCACCCCCGGAATGTCAGGGAGGCAGCAGGGCGGCGTGCGGGCCAGAGGGGAGCTGCGACAGTCCAGGAGGAACTTTCGGTCATAGATGATCCGAGTGCCTATATTTTagtaatcaaatcaatattatCTTACGGGAAGGAAACAGTCCTGCAACGGGCAAATGTTGACCGACAAGCCTGTGAAAACACGGAGGCCAGCCAGGTGTGTTCAGTAAGTGCCATCTTAGTATTGTGGGTTACGTTCGATCCAAACACGTCTAAACATGTTCCTACGTTGCGGTTTACAACATTCAAGAGTTGCATCATTAAAAGCTGAGCCTTGTAAAGCGTCAATGCTCGATACACCCCcccattacattttctttatcagaacagaAAAGCACATGCCACCAGGCTGAAATGAAGTAGTGAGAACATGCTATCAGCTTTCCTTCTATCAGCCCCGTTGAACCTACTGTGAACCGTCAAACAATCATCCTTGACCTACATTCACTCAGTGAGGAAAAGCCAGTGAGTGCATTGTGGTGCAGAAAACAGCTCGAAACGGAGCCCATTGGTTTATGCATAGAAATCATGCATGATATTGCTCTTGGAAATTTTAGTCATCATCACGGCTCATCTGATCATCTACACAAACAGCGATCGATAAACTATTTACAACAAGAATAGCCCTTACGCACTAGAAAAGCAGAAGTGGACTTTTACAATGGGAAACCAACAGAGTCACATGCCTCGAGAGGCGTCACGTCCTCTTTTTGTCAACTGTTTACAAATTTTGTCAGCTGACAAAGCCTAcataaaagtaattacaaaaGACATGCGAATGTTTCTATTTTCTATGAGAGACAGCtataaaaaaggtattttttccccttaaatttaaataaaaaagtgacaaTTTCATTAATATCATGAACAGTATCACATCACCACACCAGCCTTTCCAAAATAAACTTGAAGGTCGTTCAAGGCCACAGTCAGTAATTTTTAGTGTCGTAAATGAAACGTTCACAACTTTTAAATGACCAAAGACGCCTGTAAAGAATTTTTTAGAAcgtatcatttttaaatttcatatttgagtCAACCAATTCCTATTTCTCCTGTACGTTTCaagcatattttaacattatttctgCCGTTCCGACGTCCGAGAAGACCGGCAGAACATTGTCAAGCAAAGCAGATAATGCCGACTGCAGCCAAGTCAGTAAAACAATGTTCTTCTCGTCGTGACGATAAAATTCTTGGTTTATGACCCTTCGCATGTACAGTTAAAAGCAAACAATACAAGACAGGCGGGCTGCAGCGTTATGAGCACGCGCACCGCGCTCTGTCAGGCACAAAGACAATGCGAGCGGAGATGCATCGCTATGTCGCggtcaaaacaaaaacaacgcATGCCCCGCGACAGCTGCGAATGCCCCCAAACGACTCGTTCGTGACATTTACCTCCAGGAGTCGTGCTAAAAAGGGTCCCTCCGGGCGTCGTGGAGTAATCGTGAGGCATGTGGGCCGCATCGTTGATTGTGACTCGTCTGGTGGTCGGGATTGCCTGACTGGTGGTCTTCTGACTGCCCATGGACATTTTCAACACTAGTGCGATCACAAATTCAGCCAGCTGCCTTAATCAAATAGTGTCTCTGCACCTTGGagcaaaagaatgaaagagTTGAGCTCGAatttaacaggaaaaaaaacgaatatgTCAGCAGCAGTTCGGTATCAAGATTTTTTCTATAATCATTTACCTTGTCCGTTTGTGGCAAACTTGactacatacaaaaataaataatactaaatatttgaGCCGGTAATACGCTTcattcacacacgcacactcgcAAACTAGCTAAAATGCTAGCCTTCTCCGTGACCACgttttctctctcactccctcATGCACACACCACGCACTCAACAAAACACGAGCAGGAAAGGGCTATTTAAAACGGAGCATTGGTGCGGGGGCGCCCCCGCTGGTGTGCGGCGGTATTACAACAGCgcgatgggaaatgtagtttttttacGCGAGTTGTTTGCGTTACACTGATTTCTTTACTTGCCATTGGTGTGTACCTTAATGGCAACATCTCCACCgaaaatccttttttttgtaaggaaaaatacctttttattaaataccaCACATTCTGTGAAAATGTTAGAAAATTTTAGtcagaaagaggaaaaaaatattaaatgtgctGTACACATAAACGTAATACTGGATAtaaaaaatgatgacaattttgcCAACATCATAAGATTCCCTGACAATGCTGCCATCCTGTAGTCTCcattcattctttattttacGTCAATAGTATGagatttataaatgcatatgatCAGTGATATTTGGCACATTCtcttacacacgcacacagtgtCACAATATGTCACatctttctttattaatttttgtaaatgatcTGAGCTGGTGTGCAGGGTAAATGATCTATACATATCTTCATATCAGAATGAATCTGAATAAAAGGCTTGTATACATATCCAATGTTCGTATTTCCTCTCTCcgttacaataaaaaaaaggaaatgaaaacatgTTCAAATAGCTACAAAGCCTCTACATTCCCCATGACATGGGCATGTATGTATTACTGGATTCTAACTAATAGACTTAAAGTACATCCATAACAACTCTAATAAGGGTGCATAGCATtctaattaaatatactttgtcatatatttatacatatattctttattaaaaacatctttttctgTGCATGTGCGCAGTTGCATTCCTTAGTACAGAGTAATATGATATTGCGTTTATATTGTCATTAATCCATTCTAAAGGAGTATAGGTGAAGTCTATTTTTGCAACAGTTAAACATTGTACATAAACTCTTTTTCAATACATAATGATTGCGACGTTAAATTGTTTTGTTCctcaaacaaaccaaaaaataattaaataaataaatataaattaattcgTTAAAAACATTTCCCCCACCACTGTTTTCAGGAATTTTACGTCTCAGTTAACTATTACAGCAGCGATACAATATTGAACATGTATCCACGTCCTTCATGCTGAGGTCACTTCCCTTTCCCGCTTCCCAACACCCCTGATATTCCTTATACTCCTTTGAGTGGATGTTGAATTTTACCGTTACACGTGTATTAACTAGAATGATGAAAGTGAAATCATCTGTCAACATAAACCTGAGTGAACTGTAGAAAACAATATACAGTGAAGGCAAAACTCATGAGGGTTTTAATGCGAAGGGACGTGCGCGGTCTCACAAAGCGCACAGTTGCATGAAATCAACAAAAACACTAGGATCTGAttagacattttctttttaaatatgaaagtaCAATCATTGTCATTCGTCCAATTGTCCATGCATtccataaatctttttttttttgttgtttgtttttctcgtTTGGAGCAtaagttcatttattcatacactcactcattcattcgCTCAGTGACATCCCTCAACTTAAACTACACAAATGTGTGAGCCAGTATATCACGGTGTGCTCGTGACTATGTAAGCTACTGTGCTGTGATTAAATGCTGAGCACCGTACCTGATTTTCATTATGCTTGCCAGCTGTTCAAAGAAACCTTGTCCATTAAAGTGAAACGGCTACCTTTCAGTGAACTCGAGTTGGCATGTAGGTCGCGTAATTGCATACGGTGTGAGATACTCATGCATGCTGTTATATCTCTTGAATCGTATACGTCTTACAAATGCTACTAAAATGTCGGgttaatacagtatatactgaACACACAAGCACTCGTAGACGGAAAaacacgcgcacgcacgcacaccgACGACAACGCAGTATTCCAACTGTTGCAGCACGTTTGATATTATTGCTTTGGTAGACTATACTTTGAAGagttttgtgtatgtttggGCTCTTTcgtagttaaaaaaataacaccaactaaaaaaaaacacatgcaaatgacGCTAATAGGGAACCGGTTACATGAATAGAAGTAGTTTAAGCTTCCCATAGTTACCATATAACCTCGTTGGTGCGTGTTGGTAAAAGTGAGACATTTGAAGCCAAAAAGTGAGACAGACAGTTGTGAGTTCACAGTTCAGGGGTCAATTTTAAGGTGGACTTTCACAGTGCTGTCTGTATATTTATCGGTCTATTTTTAACTGTACATCCAAATGAAAACGAAcgaacagagagaaaaagaataaTCGTTTAAAACGCTTCCTATTTCTTCCGAAATCCCAAACATTACAAAGGCAGTTACTCAGAGATAGTCCCCAAGCCCCACACGTCACAGCTacaatcgtttttttttccaccggCACAGCttgattaataaatagaaaaaaaaaaaaaaaaacgggccGAGTGCGGGCCCAAGAGAACAGCATGAAAAGCAGTGTTAACCAGCATGCAATGCTACATTAGTCTGAAATCGGTCCGACAATGCGGTTTTAGTCGAGCAGCTGAGCTACAAATGTTGATGAATGGATGGTCGGTAGGTCAGAGGTTAGAGTTGTGAACTGTCAAACAGAGAAAGCACATGCCCTCCTTAGGTTGCCATTTTGGGTGTTACGTACAAAGCTACACTATCCtgcaacaaataaatcaatctgttttttttttttaaacaggggGGCTAGAAATTCAAAACGAGAGATATAAAAGTAAAAGGTGGCTGACAGTTCAAAAGAACACGGATACGCTTCACAAAATGGAAATAAACGAACGCGGACGCTCACAAGCGGGAGAGCACAGTGGCTTGTTGTCATTCCCATGGCAAACACCAAATGAGCTCTGACCGATCCAGAAAAAAAGCTCAGTACCAAGCCAGAAGCGAGTACACATGCGTTAGATAccgacacacacgcacacacaccgaCGCACATTCACGTAGCATTAGAGTGCATATATCACATTGAATAACAGGATAAAGGGCCTGTGGGAAATGACGTGACGGGCTTAGCGTCCACTATGCTGCTGTGTAATGACAATCaatttgacaaaataaagaaCTGTTGCTTTTTTTGGGCTGTTGTTTTCCCAAGACCCTTTGTTTCAAGAGTCTCTCGTTTTCAAGATCAAAAGGTCCAAaggtttttttccctccccGCTGCCAGTCCTGGAACGGCCCTTTACCTCGTACCCCTTCAGTTTTTTAGATAATGACAGCTCATAGGTCATGCACCAGCAGTCAGTCATGCGTTTACAGTTGACAGGAAGcacttttgttgctttttttggtGGTTTTCTTCACGTTTTGTAGAAAAAGTTCATGCCCTATGCTAGttgtatgtttcttttttcttctgttaaaaatgttacaaaactaCAGGTAGAGAACTCCATCTCCTTGTTGTTTTCCGGTGGCGCTCCATAGTTGTTTGACTGTAGGATTTGGGCGCGATGTATTGTTCTTTTgctgcatgttttgttttttttttccatcatcgTCCTATCTCCCAGTCGTGCGTAGGTGAAAGATGGTTTGGCAGTGGATGTTCGACCCTGGAAGAGCAATCCTTTGTGAACAAATAGCTCCTTCACTCTGGCTAAAACATAAAACCGATGGACGAATCACTCAAGTTTAGCAAAGCTAGCCTGCCCCATGGGTTTAAAGTTGTTCTTATGTAATTCTCTAATCATTTTACCAGTCCCGGGCCGTACCTTCAGgacagtttgtgtttgtttcagtgcTTTACTCTCCGTAGACTGGAGTGCTTCACGGTCTGGACATCCCTTTTCACATCCATGCCCTTGTTCACAACATTCCCATGCTCATCGGTAAACTGCTCTTCATGTAGATGATCACTGGCAAGATCTATCGGATCATCCTTCTGCAAGCAGGGAATAATGGTTGGATTAATTATCATTGCCAATTAATTGAGGTCAAGACTGTGCCCAAAATCATGTTCTTTGCTCAGACTGGACAGGCCCAGGGGACACACCTGTGCCTTCCGTCTGTCCTGGTCCCATGCCCGTAATTCCCCCTCCTGATGGGAGAAGCCCAGCCCTTTATCAAAGGGCTGAGTGCCTAGCAGACGCCCCCGCAGGACCTCCGAATGGCCTGTATCACATACCGGTGTAAGAAGGGCCTCCTGTGCTACACGTGACTGATTGTGGTCCGGGGACGATGACATCATGGCCTCCATGGTCTGCCTCGCTTTGGGTTGGGACCAGCTGTGGAGGGAGTCTTTCTCCTGCGAGTAAGGTTGGAAGGCACCGCCGCTGAGCCTGTGAACGAGGGACGGACAAAGACGGTGTACAAGTTGTCTGTCTAAAGGtccatttaaaattttcaatAATGGTTCTAATTCTGCAAAAATAGCGAAGACCACACCACAACATAACGTGGGAACGCAATCCATACCTGTCCCCATTGTGTTCAAGGGCTCGAGTCAGTCCGGTTCTCTCGCACAACTGAGCGTAGAGCTGTTGCCCTGTAAGAACAGAAAACTTTTCCTCTGAACTTGCCCCTTTTCCACCCTTTCCTCCTCCTCTAGCTACACCTGTCAAACTGCCGCCCGCAGCCGCCGCTGCCACCTCTGTCCTCTTGCCCTCCGACCTCTGACCTCCAGCCTGCCCGTTATAGTTGGCCTTTGGGACGGCGCCACTGGCCCATGCCTTTTCTGCACTTGTAGACACCGGCTCGTGCTGTATGTCATCTTCCTCaatctcctcttcctcctcctcttcctccagctCCATAATGGAGCCGCTTGCCCCGCTGGCTCCGCTGCTGGGCCTCCCCAAACTGCTGCAGGGCAGGCTCAACGTGTTAGCCTCAGAGTCATCCGCACGGCTGCTACCATCCAGAGACGAGTCTTCCACGGTCACCAGGGACGGACTGACCCCCGCTGGCCATACCTGCACATCCGACATCTCCATCATAGTGTCCTCCTCAGTGGTGGCGATGGGCGCACACTCCAGACTCGACACCTCCTGCCAGTAGGGCTCGACGCCCAGCGGAGAGGGCAGGCTGTACTGCATAGAAGCGGGGGAGAGCAGCTCCTCCTGCACCAGCCCGTAACCTGAGGGATGGCCAGACAAGAAAGGCAACGCTAACACCACACAGACACAGTGGGGGTACGTGGGGAGTTTTGACCCTCTCCGAAAGGTCATGCAGAACACAGTGCTCTGGGTGCAAAGTCTGTCGATATATAAGTGAACATAGGTGCTTTAACGCAAAGCATTAACATAGTAACAGGGCCACAGAAAGTTCATTCTGCAGTGAGAGATTGGGTTCACTCAAAAAGCGCAATCCACTTTCAAAGTaacttttaaaggaatattctgggGGTTTTCAGCCTGAAGGTATTTGAAACTAAGTTTGCATTTACATTgttgttttacaaaaacaaagagttttttcttttggaaataGACTCACTTTCAAAATCcactagagttaaacagttgagttttacggTTTTCTAATCAATTCAGCCTATCTAAATATCTGTctgtagcacttttagctgcagcttagcgtAAATCACTAAATAGACCATTAGCATCATGCTCCAAAAGAGTTTCAAGATGTTTCGAATTTTTTGAATTGTATCatcaaaggtcagcagcaaagatATTGGTTAAAAATGGGATTGAATAGATAACagatatttgtgttatttatatacatttttattgcaggTTTTCAttgcactgtttttatttattgtgaggaatactgaatctgtttttgtgcaCGTGAGGTGAGTAAATGCATGATTAGAACTATAGAAATCATCATgtttacacattacacacaacaTGGGGTCAGGAGAGCTGTCAGTGAATAAGTGGGAAAACAAAGTCATTTGTGttacttat

Function

NR:

description
PREDICTED: ankyrin-1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212722 True 7929 lncRNA 0.43 2 5366192 5374922

Neighbor

gene id symbol gene type direction distance location
ndr1 ndr1,LOC107706449,LOC107681142,LOC107589292,LOC107708517,LOC107591687 coding upstream 1151 5361958 ~ 5365041 (+)
htr1ab htr1ab,htr1a,LOC107589255,LOC107703504,LOC107681135,LOC107706510,LOC107708525,LOC107591737 coding upstream 26054 5338356 ~ 5340138 (+)
c7b c7,c7b,LOC107681132,LOC107706508,LOC107703570 coding upstream 44095 5315013 ~ 5322097 (+)
LOC122326643 oxct1b,LOC107703571,LOC107591691,LOC107681133,LOC108439614,LOC107711896 coding upstream 51783 5308926 ~ 5314409 (+)
LOC122326646 gadd45gb.1,LOC107591738,LOC107589289,LOC107706448,LOC107708506,LOC107681111 coding upstream 75162 5289647 ~ 5291030 (+)
rictorb rictor,rictorb,LOC107681152,LOC107589259,LOC107703559 coding downstream 68189 5443111 ~ 5466387 (+)
lifrb NA coding downstream 91592 5466514 ~ 5474409 (+)
ccdc61 ccdc61,LOC107681161,LOC107706517,LOC107589261 coding downstream 100312 5475234 ~ 5481781 (+)
itpkca itpkca,LOC107706518,LOC107589262,LOC107681162,LOC107703557,LOC107591683,LOC107708494 coding downstream 107565 5482487 ~ 5489762 (+)
LOC122326433 LOC107589295,LOC107681110,LOC107706452,LOC107703460,LOC107591721 coding downstream 114956 5489878 ~ 5499593 (+)
G144007 NA non-coding upstream 37787 5327230 ~ 5328405 (+)
G143937 NA non-coding upstream 214303 5151557 ~ 5151889 (+)
LOC122326722 NA non-coding upstream 251908 5111482 ~ 5114284 (+)
G143926 slc26a1,LOC107589247,LOC107706495,LOC107681097 non-coding upstream 259966 5103857 ~ 5106226 (+)
LOC122326250 NA non-coding upstream 290589 5070327 ~ 5075603 (+)
G144081 LOC107708509 non-coding downstream 163278 5538200 ~ 5539464 (+)
G144126 cbr1l,LOC107706524,LOC107573060,LOC107681174,LOC792137,LOC107589305 non-coding downstream 257119 5632041 ~ 5632851 (+)
G144129 NA non-coding downstream 309906 5684828 ~ 5685097 (+)
G144130 NA non-coding downstream 330618 5705540 ~ 5706835 (+)
LOC122326140 NA non-coding downstream 417942 5792864 ~ 5794604 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other upstream 338146 4947584 ~ 5028046 (+)
fybb LOC107706487,LOC107681167,LOC107589243 other upstream 454376 4899490 ~ 4911816 (+)
slc45a2 slc45a2,LOC107589269,LOC107681104,LOC107591731 other upstream 620926 4730603 ~ 4745266 (+)
btc LOC107706483,LOC107681194,LOC107722828,LOC107703511 other upstream 656751 4705157 ~ 4709441 (+)
si:ch211-222n4.2 LOC107722820,LOC107591717,LOC107685267,LOC107589267,LOC107706417 other upstream 842012 4511926 ~ 4524180 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other downstream 126181 5501103 ~ 5506433 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other downstream 127111 5502033 ~ 5517936 (+)
sdhaf1 sdhaf1 other downstream 131624 5506546 ~ 5508393 (+)
G144077 NA other downstream 133743 5508665 ~ 5510746 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other downstream 357518 5732440 ~ 5735137 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G44794 NA non-coding CI01000006 null 7162480 ~ 7164707 (+)
bowfin (Amia calva) G40846 NA non-coding CM030125.1 CM030125.1 13986950 ~ 13988088 (+)