G144081 (LOC107708509)


Basic Information

Item Value
gene id G144081
gene name LOC107708509
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5538200 ~ 5539464 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU212867
TGTAATGGTTACATCACTTTATTTGAATATCGTTGTGACGTAATGCAAATATTGCTTTGGTTATGAGATTGAGAGTTCACGCTTTACTACattgaatggaaaaaagtgaacaaaaatgACCTATAATCTATTCACAGTTTATTGTGAAGTACATTGTTTATGAGCTTAGATATTTACATTGTACATAATACAGTATCTACACACATACTGTAAGCAATGAAAAAAGTACATAACCATGTGCCTTATGATTcaaattctatatttttgaaaatacattttccaaaagagcgttttcacagtgatgccatagaagaaacattttaaattcccCAAACCACACTTAAACAGTAAATAGTTCATAAAAGAACGATTTTTATTGGAGTGAAGAATTATTTCAAGctataaagcacatttttttcccaaatggAACGGCTCCAttgatgttaaaggttcttaataaagaacctttatttttaagtgttatgTACATCACAgtgtaaacaacaacaacaacaacaacaacaacaaacttatGGCAAATCACCTCTAGAAGTCACAGTCAGAAATCTGTCATAAGCATAAAAATCAAACCTCAACCTAAAACGACTACTGGtctacaatgaaaaaaaaaataacatttgatgaaaaaatCCTTGTGTAATGCAACATATTATATGATTTTAACAATCAAAACAAGATCCCTACAGAACAAACAGCAATTTGTACAGTCTTGAACATTTCAGCTGTGGTCACCCTTAGTTTGAAATAGGAGCGAACAAAGAGTCTCATATAGGCAGCCTAggtcatttgttttatattggaCTACACTGTACATGGTAAACAAACCAGAACAATTACACATATATGCTGCCAGGGTTTTCAATGTGCATTATATAAACCAGTAATTATATACACCAATAATAGTTCAGTGTCCTCCTAATTACTGTATAGCGGTGATTTTGCTTTGCTCCCAGTATTCTCGTAAACAGTCTTCACTTTGGGGCTGGCAGTGTACTGCGGTCGACACGAGGACGCTGTCACACATAGTGTTCTCTATGGTTGATGTAAACTTGGTCTGCCCCGTTCTGATGACATATCCACTCCTGATAGGACAGTGAATGGTGAGTGGGACTCTGGAGGTCTCTGCGAGCCACTCTACCTGGCACCCGTTCAGCCAATTCGTATCGCCTCTCCATCCGACGAGCCTGAGTGACAcaacagatttaaaatatattagtatgCAGGTACGTACTCAATGAAAAAGC

Function

NR:

description
PREDICTED: nectin-3-like protein isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212867 True 1265 lncRNA 0.36 1 5538200 5539464

Neighbor

gene id symbol gene type direction distance location
rtn2b rtn2,rtn2b,LOC107706456,LOC107703556,LOC107708513 coding upstream 7997 5524580 ~ 5530203 (+)
LOC122326433 LOC107589295,LOC107681110,LOC107706452,LOC107703460,LOC107591721 coding upstream 38607 5489878 ~ 5499593 (+)
itpkca itpkca,LOC107706518,LOC107589262,LOC107681162,LOC107703557,LOC107591683,LOC107708494 coding upstream 48438 5482487 ~ 5489762 (+)
ccdc61 ccdc61,LOC107681161,LOC107706517,LOC107589261 coding upstream 56419 5475234 ~ 5481781 (+)
lifrb NA coding upstream 63791 5466514 ~ 5474409 (+)
b9d2 b9d2,LOC107589303,LOC107706523,LOC107681120,LOC107573061,LOC107703500 coding downstream 84419 5623883 ~ 5626040 (+)
tgfb1b LOC107681095,LOC107706521,LOC107589304,LOC107703499,LOC107754964,LOC107573058 coding downstream 87544 5627008 ~ 5631309 (+)
LOC122326807 LOC107742230,LOC107703498,LOC107573064,LOC107735684 coding downstream 106978 5646442 ~ 5647335 (+)
LOC122326971 or125-7,LOC107573644,LOC107719003,LOC107703451 coding downstream 112845 5652309 ~ 5653238 (+)
or62b3 LOC107719021,LOC107703497,LOC107573649 coding downstream 122260 5661724 ~ 5662650 (+)
G143990 LOC107589256,LOC107706512,LOC107681141,LOC107708519 non-coding upstream 163278 5366192 ~ 5374922 (+)
G144007 NA non-coding upstream 209795 5327230 ~ 5328405 (+)
G143937 NA non-coding upstream 386311 5151557 ~ 5151889 (+)
LOC122326722 NA non-coding upstream 423916 5111482 ~ 5114284 (+)
G143926 slc26a1,LOC107589247,LOC107706495,LOC107681097 non-coding upstream 431974 5103857 ~ 5106226 (+)
G144126 cbr1l,LOC107706524,LOC107573060,LOC107681174,LOC792137,LOC107589305 non-coding downstream 92577 5632041 ~ 5632851 (+)
G144129 NA non-coding downstream 145364 5684828 ~ 5685097 (+)
G144130 NA non-coding downstream 166076 5705540 ~ 5706835 (+)
LOC122326140 NA non-coding downstream 253400 5792864 ~ 5794604 (+)
G144157 nkx6.1,nkx6-1,LOC107703597,LOC107700773,LOC107706438,LOC107722812 non-coding downstream 390305 5929769 ~ 5930885 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other upstream 20264 5502033 ~ 5517936 (+)
G144077 NA other upstream 27454 5508665 ~ 5510746 (+)
sdhaf1 sdhaf1 other upstream 29807 5506546 ~ 5508393 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other upstream 31767 5501103 ~ 5506433 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other upstream 510154 4947584 ~ 5028046 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other downstream 192976 5732440 ~ 5735137 (+)
LOC122326918 LOC107706529,LOC107548159,LOC107681093,LOC107719017,LOC107573856,LOC107703552 other downstream 196449 5735913 ~ 5741905 (+)
LOC122326980 tnksa,LOC107706493,LOC107681059,LOC107589272,LOC107708542,LOC107703465,LOC103369208 other downstream 255298 5794762 ~ 5799702 (+)
G144152 NA other downstream 308477 5847941 ~ 5849053 (+)
G144330 NA other downstream 994636 6534100 ~ 6535794 (+)

Expression


Co-expression Network