neu3.1 (neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159)


Basic Information

Item Value
gene id neu3.1
gene name neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5732440 ~ 5735137 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU212943
GCAGTCTGCACTCCGCAGTGGAGGAAGCTGGAGACGGAGAGCTGCAGTACACAGCACTGTATGAAACATTTGAACGAAATATTTGAAGTTATACGGAACGCGAAGTGGTTCATGGCGTCAAAAAGCCACCCGGGTCCCCTGCACGCTCTGCCTGCACGAACAGCATTATTCCAACAGAAAGATGGGAAAACATACAGGATTCCTGCTTTAATCTACATCAGTGATGGTCAGACTTTCCTTGCATTTGCTGAAGAGCGCAGCACTCCATGTGACAGTGATGCAAAAGTGCTGGTCATGAGGAGAGGAACACTGCAAAATGGATCACttcaatggtCTCCTGTTCAGACGCTCTATTCTGCTTGTTTGCCGGATCATCGCACCATGAATCCTTGTCCAGTCTACGAGAGGAAATCCAAAACCATATATCTTTTCTTTGTCTGCATATTAGGCAATACCACAGAGTATCACCAGATTGTTACGGGTAAAAACCAAGCACGGTTGTGTTACGTCACTAGTGCAGATTATGGCCAAAACTGGAGCAAAATAACCGATTTAACGAATAGCGTTATTGGAGATGAGATCTGCGACTGGGCTACTTTTGCAGTTGGACCAGGACATGGTATTCAGATGAAAAGTGGAAGACTGATCATTCCAGCATATGTTTATTACATACACTGTAGGTGTTTTCCTTTTCGTTTTCCACTCATAGTCAGGCCTCATGCTTTATCGTTCCATAGTGATGACTGTGGTGTCACCTGGCAGATGGGAGGAAAAATCACAATGAAATCCTGCGAATGTGAGATGGCTGAGATCATAGACCACGCTGATGGGAGCCATTT
>TU212944
GCAGTCTGCACTCCGCAGTGGAGGAAGCTGGAGACGGAGAGCTGCAGTACACAGCACTGTATGAAACATTTGAACGAAATATTTGAAGTTATACGGAACGCGAAGTGGTTGTATGTATGCATGGCGTCAAAAAGCCACCCGGGTCCCCTGCACGCTCTGCCTGCACGAACAGCATTATTCCAACAGAAAGATGGGAAAACATACAGGATTCCTGCTTTAATCTACATCAGTGATGGTCAGACTTTCCTTGCATTTGCTGAAGAGCGCAGCACTCCATGTGACAGTGATGCAAAAGTGCTGGTCATGAGGAGAGGAACACTGCAAAATGGATCACttcaatggtCTCCTGTTCAGACGCTCTATTCTGCTTGTTTGCCGGATCATCGCACCATGAATCCTTGTCCAGTCTACGAGAGGAAATCCAAAACCATATATCTTTTCTTTGTCTGCATATTAGGCAATACCACAGAGTATCACCAGATTGTTACGGGTAAAAACCAAGCACGGTTGTGTTACGTCACTAGTGCAGATTATGGCCAAAACTGGAGCAAAATAACCGATTTAACGAATAGCGTTATTGGAGATGAGATCTGCGACTGGGCTACTTTTGCAGTTGGACCAGGACATGGTATTCAGATGAAAAGTGGAAGACTGATCATTCCAGCATATGTTTATTACATACACTGTAGGTGTTTTCCTTTTCGTTTTCCACTCATAGTCAGGCCTCATGCTTTATCGTTCCATAGTGATGACTGTGGTGTCACCTGGCAGATGGGAGGAAAAATCACAATGAAATCCTGCGAATGTGAGATGGCTGAGATCATAGACCACGCTGATGGGAGCCATTT
>XM_043220893.1
ACTCCGCAGTGGAGGAAGCTGGAGACGGAGAGCTGCAGTACACAGCACTGTATGAAACATTTGAACGAAATATTTGAAGTTATACGGAACGCGAAGTGGTTGTATGTATGCATGGCGTCAAAAAGCCACCCGGGTCCCCTGCACGCTCTGCCTGCACGAACAGCATTATTCCAACAGAAAGATGGGAAAACATACAGGATTCCTGCTTTAATCTACATCAGTGATGGTCAGACTTTCCTTGCATTTGCTGAAGAGCGCAGCACTCCATGTGACAGTGATGCAAAAGTGCTGGTCATGAGGAGAGGAACACTGCAAAATGGATCACttcaatggtCTCCTGTTCAGACGCTCTATTCTGCTTGTTTGCCGGATCATCGCACCATGAATCCTTGTCCAGTCTACGAGAGGAAATCCAAAACCATATATCTTTTCTTTGTCTGCATATTAGGCAATACCACAGAGTATCACCAGATTGTTACGGGTAAAAACCAAGCACGGTTGTGTTACGTCACTAGTGCAGATTATGGCCAAAACTGGAGCAAAATAACCGATTTAACGAATAGCGTTATTGGAGATGAGATCTGCGACTGGGCTACTTTTGCAGTTGGACCAGGACATGGTATTCAGATGAAAAGTGGAAGACTGATCATTCCAGCATATGTTTATTACATACACTGTAGGTGTTTTCCTTTTCGTTTTCCACTCATAGTCAGGCCTCATGCTTTATCGTTCCATAGTGATGACTGTGGTGTCACCTGGCAGATGGGAGGAAAAATCACAATGAAATCCTGCGAATGTGAGATGGCTGAGATCATAGACCACGCTGATGGGAGCCATTTGTACTGCAACGCTCAGAGTACTTGTGGCCACAGAGTGGAGGCCTTAAGTGAGAGCAGCGGGGCAGCTTTTGACAATCCTTATGTTGCTCAGAAACTCGTGGAGCCCTATCATGGCTGCCAGGGTAGCGTGTTGAGCTTCCCTGCGCCCGAGCCAtcggaggaagaggagaagagcGCAAATGACTGCTTGACTCGGTCAGACACAAAAACATGGTTACTCTATTCCCATCCAACTGATAATAAGAAAAGGAAGGACCTTGGAGTTTACTTGAATAAATCGCCCTTGAAAACGTCTGGTTGGGGCCAACCGTGGATCATCTATAAGGGTCCCAGCGGATATTCAGATTTGACTCGGTGTGAGGAGCGATTTGCCTGCCTCATGGAGTGTGGAGAGAAAAGTGAGCTTGAGGAAATAGCCTTCGTGGAATTTAAACTCAGTGACTTCTTGTGCACCTGAAATGGTGAAAGTACTTTCCTGGCACGTTTTACAGGATTGGTTcaccacaaaatgaaatattgttcATCTTCAGACCTTCCAAGATATAAattatgagtttgttttttcatttgaccaaattttggagaaatgtagcttGATATCAGTTTGTTCACCAGTGGATCCttcggtgaatgggtgccatcagaatgacaGACAGCTGATTAATCAGATGTCACGATAAATAAAGTAATCCATTCCACTCCAGTCCATTATCTTGTGACatgaaaagctgtgtttgtaataaacaaatacttCATTAAGatgtatttaactttaaaatattgaatcagTCCTCTTTACTGAGAAATTTACTTGCACCTTTTACAAGAACAGTTCTAAATAAtgaactattaaatatatatatatatatatatatatatatata

Function

symbol description
neu3.1 Enables exo-alpha-sialidase activity. Acts upstream of or within ganglioside metabolic process. Located in endoplasmic reticulum. Is expressed in several structures, including digestive system; gill; heart; integument; and pleuroperitoneal region. Orthologous to human NEU3 (neuraminidase 3).

NR:

description
sialidase-3

GO:

id name namespace
GO:0001573 ganglioside metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
K12357 NEU2_3_4; sialidase-2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
TU212943 False 839 TUCP 0.45 3 5732440 5734253
TU212944 False 848 TUCP 0.45 3 5732440 5734253
XM_043220893.1 True 1723 mRNA 0.43 3 5732449 5735137

Neighbor

gene id symbol gene type direction distance location
pold3 pold3,LOC107706527,LOC107548157,LOC107719019,LOC107573853 coding upstream 19596 5707122 ~ 5712844 (+)
LOC122326977 LOC107703495,LOC107718999,LOC107703444 coding upstream 30030 5701472 ~ 5702410 (+)
or61a1 LOC107703446 coding upstream 34095 5697407 ~ 5698345 (+)
LOC122326976 LOC107719001,LOC107703447,LOC107719002,LOC107573645,LOC107703448 coding upstream 36529 5694961 ~ 5695911 (+)
LOC122326975 or125-1,LOC107719002,LOC107573645,LOC107703448,LOC107719001,LOC107703447 coding upstream 45301 5686198 ~ 5687139 (+)
LOC122326891 rpl17,LOC107722835,LOC107700774,LOC107703598 coding downstream 187854 5922991 ~ 5925662 (+)
LOC122327012 NA coding downstream 188283 5923420 ~ 5923495 (+)
LOC122327009 NA coding downstream 189152 5924289 ~ 5924361 (+)
LOC122327007 NA coding downstream 190329 5925466 ~ 5925527 (+)
LOC122326530 LOC107548171,LOC107706536,LOC107703536,LOC107718968,LOC107551635 coding downstream 282287 6017424 ~ 6035864 (+)
G144130 NA non-coding upstream 25605 5705540 ~ 5706835 (+)
G144129 NA non-coding upstream 47343 5684828 ~ 5685097 (+)
G144126 cbr1l,LOC107706524,LOC107573060,LOC107681174,LOC792137,LOC107589305 non-coding upstream 99589 5632041 ~ 5632851 (+)
G144081 LOC107708509 non-coding upstream 192976 5538200 ~ 5539464 (+)
G143990 LOC107589256,LOC107706512,LOC107681141,LOC107708519 non-coding upstream 357518 5366192 ~ 5374922 (+)
LOC122326140 NA non-coding downstream 57727 5792864 ~ 5794604 (+)
G144157 nkx6.1,nkx6-1,LOC107703597,LOC107700773,LOC107706438,LOC107722812 non-coding downstream 194632 5929769 ~ 5930885 (+)
G144212 NA non-coding downstream 327287 6062424 ~ 6062680 (+)
G144308 LOC107706534,LOC107548126,LOC107681195,LOC107703486,LOC107719012,LOC107551634 non-coding downstream 727513 6462650 ~ 6462933 (+)
G144317 LOC107703481,LOC107551613 non-coding downstream 762564 6497701 ~ 6537141 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other upstream 214504 5502033 ~ 5517936 (+)
G144077 NA other upstream 221694 5508665 ~ 5510746 (+)
sdhaf1 sdhaf1 other upstream 224047 5506546 ~ 5508393 (+)
qpctlb qpctl,qpctlb,LOC107706454,LOC107703555,LOC107708501,LOC107591735 other upstream 226007 5501103 ~ 5506433 (+)
tnksa tnksa,tnks,LOC107706493,LOC107681059,LOC107591704,LOC108279024,LOC108436993 other upstream 704394 4947584 ~ 5028046 (+)
LOC122326918 LOC107706529,LOC107548159,LOC107681093,LOC107719017,LOC107573856,LOC107703552 other downstream 776 5735913 ~ 5741905 (+)
LOC122326980 tnksa,LOC107706493,LOC107681059,LOC107589272,LOC107708542,LOC107703465,LOC103369208 other downstream 59625 5794762 ~ 5799702 (+)
G144152 NA other downstream 112804 5847941 ~ 5849053 (+)
G144330 NA other downstream 798963 6534100 ~ 6535794 (+)
cfap300 si:rp71-1p14.7,cunh11orf70,LOC107731447,LOC107548131,LOC107681129 other downstream 847609 6582746 ~ 6585034 (+)

Expression


Co-expression Network