G144157 (nkx6.1,nkx6-1,LOC107703597,LOC107700773,LOC107706438,LOC107722812)


Basic Information

Item Value
gene id G144157
gene name nkx6.1,nkx6-1,LOC107703597,LOC107700773,LOC107706438,LOC107722812
gene type non-coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 5929769 ~ 5930885 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU212969
CAGAGAGCCAGGTCAAGGTGTGGTTTCAAAACCGAAGAACAAAATGGAGAAAACGGCACGCGGCCGAAATGGCCTCGGCGAAGAAGAAACAAGATTCGGAGACCGAGAGGCTGAAAGGGGCTTCGGAAAACgaagacgacgacgacgacTACAACAAACCCCTGGACCCAAACTCGGACGATGAGAAAATAACGCAGctgctgaaaaaacacaaaccgaACTCGGCTCTTATCATTCACACGTCGGAAAACGAGAGCTCGTAAAACGGAAACGGCGAACGGTCCGTCCGGTTCTTCGAGAAGTGTCAAAATATAATGTaggctgctgttttttttccaccgaGTCCGAGCTCTGGTTTGAGAGGAAGGATGCGAATCAGAGGAATATGCACTATTGGTGGAGCCGAGCG

Function

symbol description
nkx6.1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within cell fate commitment; enteroendocrine cell differentiation; and spinal cord motor neuron differentiation. Predicted to be active in nucleus. Is expressed in several structures, including DEL; endoderm; nervous system; neural tube; and pancreatic system. Orthologous to human NKX6-1 (NK6 homeobox 1).
nkx6-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in several processes, including detection of glucose; positive regulation of type B pancreatic cell development; and regulation of transcription, DNA-templated. Predicted to act upstream of or within several processes, including neurogenesis; regulation of axon extension; and regulation of neuron migration. Located in extracellular exosome.

NR:

description
homeobox protein Nkx-6.1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU212969 True 409 lncRNA 0.50 2 5929769 5930885

Neighbor

gene id symbol gene type direction distance location
LOC122326891 rpl17,LOC107722835,LOC107700774,LOC107703598 coding upstream 4107 5922991 ~ 5925662 (+)
LOC122327007 NA coding upstream 4242 5925466 ~ 5925527 (+)
LOC122327009 NA coding upstream 5408 5924289 ~ 5924361 (+)
LOC122327012 NA coding upstream 6274 5923420 ~ 5923495 (+)
pold3 pold3,LOC107706527,LOC107548157,LOC107719019,LOC107573853 coding upstream 216925 5707122 ~ 5712844 (+)
LOC122326530 LOC107548171,LOC107706536,LOC107703536,LOC107718968,LOC107551635 coding downstream 86539 6017424 ~ 6035864 (+)
LOC122326982 neu3.1,LOC107706460,LOC107718989,LOC107681103,LOC107703553,LOC107548159 coding downstream 110460 6041345 ~ 6043815 (+)
LOC122326403 LOC107706529,LOC107548159,LOC107681093,LOC107719017,LOC107573856,LOC107703552 coding downstream 113251 6044136 ~ 6047775 (+)
LOC122326404 neu3.3,LOC107719016,LOC107703493 coding downstream 119963 6050848 ~ 6058624 (+)
gria4b gria4b,LOC107548160,LOC107718985,LOC107706429,LOC108440167,LOC108279362 coding downstream 166591 6097476 ~ 6258252 (+)
LOC122326140 NA non-coding upstream 135165 5792864 ~ 5794604 (+)
G144130 NA non-coding upstream 222934 5705540 ~ 5706835 (+)
G144129 NA non-coding upstream 244672 5684828 ~ 5685097 (+)
G144126 cbr1l,LOC107706524,LOC107573060,LOC107681174,LOC792137,LOC107589305 non-coding upstream 296918 5632041 ~ 5632851 (+)
G144081 LOC107708509 non-coding upstream 390305 5538200 ~ 5539464 (+)
G144212 NA non-coding downstream 131539 6062424 ~ 6062680 (+)
G144308 LOC107706534,LOC107548126,LOC107681195,LOC107703486,LOC107719012,LOC107551634 non-coding downstream 531765 6462650 ~ 6462933 (+)
G144317 LOC107703481,LOC107551613 non-coding downstream 566816 6497701 ~ 6537141 (+)
G144329 NA non-coding downstream 601155 6532040 ~ 6533579 (+)
G144347 LOC107731449,LOC107681146 non-coding downstream 674596 6605481 ~ 6606030 (+)
G144152 NA other upstream 80716 5847941 ~ 5849053 (+)
LOC122326980 tnksa,LOC107706493,LOC107681059,LOC107589272,LOC107708542,LOC107703465,LOC103369208 other upstream 130067 5794762 ~ 5799702 (+)
LOC122326918 LOC107706529,LOC107548159,LOC107681093,LOC107719017,LOC107573856,LOC107703552 other upstream 187864 5735913 ~ 5741905 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other upstream 194632 5732440 ~ 5735137 (+)
kcnk12l LOC107589263,LOC107708511,LOC107703554,LOC107591682,LOC107681176 other upstream 411833 5502033 ~ 5517936 (+)
G144330 NA other downstream 603215 6534100 ~ 6535794 (+)
cfap300 si:rp71-1p14.7,cunh11orf70,LOC107731447,LOC107548131,LOC107681129 other downstream 651861 6582746 ~ 6585034 (+)
anapc13 anapc13,anc13,LOC107756075,LOC107693524,LOC107561055 other downstream 1976579 7907464 ~ 7909027 (+)
LOC122326775 si:dkey-183i3.9,LOC107715278,LOC107669329 other downstream 2276918 8207803 ~ 8211125 (+)
si:dkey-183i3.6 NA other downstream 2286090 8216975 ~ 8221572 (+)

Expression


Co-expression Network