cfap300 (si:rp71-1p14.7,cunh11orf70,LOC107731447,LOC107548131,LOC107681129)


Basic Information

Item Value
gene id cfap300
gene name si:rp71-1p14.7,cunh11orf70,LOC107731447,LOC107548131,LOC107681129
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056719.1
NCBI id CM032088.1
chromosome length 19199999
location 6582746 ~ 6585034 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>TU213267
CAGGCAACATGGCGGAAAAGAAACTTTCTTTTGAGCAAGCGTTTACCTTTAATTTGCTTCCTACTAAACGATTTACGTTTCAGCAAGATCCTACGATATCAAGACTCTTGATGAAATGGTCCATGTTGGGTCGAATTACCGTCCAGGCCTTCAACTTTGACCAATCTTTCCAATCTTATAGAAGCAATGACTTTGTTTGGaACTTCTTTCAAGATCCATGTGTGAAGAGCAATTTAAAGACACTTGATACCTCTGGATCATGGACACTGCTGGGTTTGTTGATACATCTGATAATAAGGCATATtgctatgtttttattatttcactatGTTTTATATCTCATCTCCTTTTATAAAGGCtaataatgactttttacaCATTCAAAGGTAAAGACATCACACATGCAAATGCTGAAGTTGTTCCATGCACAGAAGTATCAGTGGATATATTTGATCCACTTTACTCAAATGGAGTTTTGCGTCCATCTGGCCACATTGTCAAATGTTACCATGAAATATACTCAGACTTTGATGAGTTAAGGAGGGTATGGATAGTTTTTTTGCCACTGATGatctcaaacacacctgaaatggtttaaaatgttgAATCTCTCTTGTTTGGCATGCTTTCTAACAGCTTTTGCTTGAAGAAGATTCTGACAATTATCATGTAATCAGTCTACATGATCGTCAGGAGTTTTTGTTCAGGCTATTTAAGCATATGGTCTTAGGTGGTGAACTTTGCCAATATGAGGATGCCATCAGTCCCTACATTGAGACAGCAAAAGTGATGTACAAAGACTTGGTCAGTGTTCAGAAGGATCCAGATACAAAAGAGATCCGTGTGGTCACAACAATCTTGAAAGTTTCTGCTTATgatCACAGTGGATTATGCTACCCATCTGCAACAGAAAATGAGCAGACATTTGCTTACCTCTGCATTGATCCATTTAAAAGGcatgtgtatgtactgtacCATTCATTTGGTATAGGAGACTTTTAATTGATCAGTTACTCAAGTGATAGTagaattaaatgaatagtttgtCAAACTTCCAAAAATAAGAACATAAG
>XM_043221758.1
AGCACAGCAAGTTCTCAAAGGTTCTCAGATTacttattacaataaaaaaataataataaagctatttcttatatataaagCTTAATTTACTGAATTCAAACTTCTACTAAAGCTCTCCTCCCTCAGGCGTCATTTTGCAGCATGAACGCGACTCTCATTGGTTGGCATGGAAACCAGTGGACAACAGGCAACATGGCGGAAAAGAAACTTTCTTTTGAGCAAGCGTTTACCTTTAATTTGCTTCCTACTAAACGATTTACGTTTCAGCAAGATCCTACGATATCAAGACTCTTGATGAAATGGTCCATGTTGGGTCGAATTACCGTCCAGGCCTTCAACTTTGACCAATCTTTCCAATCTTATAGAAGCAATGACTTTGTTTGGaACTTCTTTCAAGATCCATGTGTGAAGAGCAATTTAAAGACACTTGATACCTCTGGATCATGGACACTGCTGGGTAAAGACATCACACATGCAAATGCTGAAGTTGTTCCATGCACAGAAGTATCAGTGGATATATTTGATCCACTTTACTCAAATGGAGTTTTGCGTCCATCTGGCCACATTGTCAAATGTTACCATGAAATATACTCAGACTTTGATGAGTTAAGGAGGCTTTTGCTTGAAGAAGATTCTGACAATTATCATGTAATCAGTCTACATGATCGTCAGGAGTTTTTGTTCAGGCTATTTAAGCATATGGTCTTAGGTGGTGAACTTTGCCAATATGAGGATGCCATCAGTCCCTACATTGAGACAGCAAAAGTGATGTACAAAGACTTGGTCAGTGTTCAGAAGGATCCAGATACAAAAGAGATCCGTGTGGTCACAACAATCTTGAAAGTTTCTGCTTATgatCACAGTGGATTATGCTACCCATCTGCAACAGAAAATGAGCAGACATTTGCTTACCTCTGCATTGATCCATTTAAAAGGcatgtgtatgtactgtacCATTCATTTGGTATAGGAGACTTTTAATTGATCAGTTACTCAAGTGATAGTagaattaaatgaatagtttgtCAAACTTCCAAAAATAAGAACATAAGCATCTATAagaatatttctgtaaataaatgttgaatgcTGTTTTAAGAGATtggcatttatgttttttatacatatatacatacatacatacacgtgCATACATACACAACCTTGATGACACCCACTTCTACCGGCCAGGCCCCCCGGGCCAAGAGGTTGATCCACTGAGCCAGAACTTGCCAGGTGTCTCCATGCACACAGGTGATCAGGATGTTTGTT

Function

NR:

description
uncharacterized protein C11orf70 homolog isoform X1

GO: NA

KEGG:

id description
K24230 CFAP300; cilia- and flagella-associated protein 300

RNA

RNA id representative length rna type GC content exon number start site end site
TU213267 False 1073 lncRNA 0.37 5 6582930 6584814
XM_043221758.1 True 1272 mRNA 0.38 7 6582746 6585034

Neighbor

gene id symbol gene type direction distance location
arhgap42a arhgap42,LOC107703530,LOC107551641,LOC107718960 coding upstream 14723 6546071 ~ 6568023 (+)
bud13 si:dkeyp-69c1.6,LOC107703532,LOC107718963 coding upstream 54191 6524949 ~ 6528555 (+)
LOC122326078 LOC107718966,LOC107551640,LOC107703534,LOC566907 coding upstream 66867 6513516 ~ 6515879 (+)
LOC122326080 LOC107719011,LOC107548127,LOC107681113,LOC107706467,LOC107551638 coding upstream 73107 6507266 ~ 6509639 (+)
chek1 LOC107548125,LOC107681196,LOC107706535,LOC107551636,LOC107719013,LOC107703487 coding upstream 121809 6456674 ~ 6460937 (+)
birc2 birc2,LOC107703529,LOC107731450,LOC107718959,LOC107551643,LOC107548174,LOC107681145 coding downstream 679 6585713 ~ 6593962 (+)
ddias LOC107731438,LOC107681101,LOC107603284,LOC107718991 coding downstream 22719 6607753 ~ 6610753 (+)
pcf11 LOC107681148,LOC107731451,LOC107548175,LOC107718956,LOC107551645,LOC107703528 coding downstream 25969 6611003 ~ 6620143 (+)
alg8 alg8,LOC107731443,LOC107719005,LOC107703477,LOC107548176,LOC107551646 coding downstream 39897 6624931 ~ 6628770 (+)
htr3b htr3b,LOC107548134,LOC107681116,LOC107731437,LOC107551604,LOC103041566 coding downstream 129971 6715005 ~ 6720847 (+)
G144317 LOC107703481,LOC107551613 non-coding upstream 45605 6497701 ~ 6537141 (+)
G144329 NA non-coding upstream 49167 6532040 ~ 6533579 (+)
G144308 LOC107706534,LOC107548126,LOC107681195,LOC107703486,LOC107719012,LOC107551634 non-coding upstream 119813 6462650 ~ 6462933 (+)
G144212 NA non-coding upstream 520066 6062424 ~ 6062680 (+)
G144157 nkx6.1,nkx6-1,LOC107703597,LOC107700773,LOC107706438,LOC107722812 non-coding upstream 651861 5929769 ~ 5930885 (+)
G144347 LOC107731449,LOC107681146 non-coding downstream 20447 6605481 ~ 6606030 (+)
G144348 NA non-coding downstream 21813 6606847 ~ 6607346 (+)
G144353 NA non-coding downstream 37430 6622464 ~ 6623576 (+)
G144351 NA non-coding downstream 52089 6637123 ~ 7018763 (+)
G144370 NA non-coding downstream 111675 6696709 ~ 7085923 (+)
G144330 NA other upstream 46952 6534100 ~ 6535794 (+)
G144152 NA other upstream 733693 5847941 ~ 5849053 (+)
LOC122326980 tnksa,LOC107706493,LOC107681059,LOC107589272,LOC107708542,LOC107703465,LOC103369208 other upstream 783044 5794762 ~ 5799702 (+)
LOC122326918 LOC107706529,LOC107548159,LOC107681093,LOC107719017,LOC107573856,LOC107703552 other upstream 840841 5735913 ~ 5741905 (+)
neu3.1 neu3.1,LOC107718989,LOC107703553,LOC107706460,LOC107681103,LOC107548159 other upstream 847609 5732440 ~ 5735137 (+)
anapc13 anapc13,anc13,LOC107756075,LOC107693524,LOC107561055 other downstream 1322430 7907464 ~ 7909027 (+)
LOC122326775 si:dkey-183i3.9,LOC107715278,LOC107669329 other downstream 1622769 8207803 ~ 8211125 (+)
si:dkey-183i3.6 NA other downstream 1631941 8216975 ~ 8221572 (+)
G144746 NA other downstream 1983001 8568035 ~ 8568673 (+)
tmsb NA other downstream 2093257 8678291 ~ 8679513 (+)

Expression


Co-expression Network